mRNA_M-pyrifera_M_contig125980.5244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125980.5244.1
Unique NamemRNA_M-pyrifera_M_contig125980.5244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125980.5244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125980contigM-pyrifera_M_contig125980:56..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.075629-CDS-M-pyrifera_M_contig125980:55..4451622815775.075629-CDS-M-pyrifera_M_contig125980:55..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125980 56..445 +
1692277563.6176512-CDS-M-pyrifera_M_contig125980:55..4451692277563.6176512-CDS-M-pyrifera_M_contig125980:55..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125980 56..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125980.5244.1prot_M-pyrifera_M_contig125980.5244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125980 56..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125980.5244.1

>prot_M-pyrifera_M_contig125980.5244.1 ID=prot_M-pyrifera_M_contig125980.5244.1|Name=mRNA_M-pyrifera_M_contig125980.5244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
KRQRTGEETERRRGDSSAPRENSRPGPARGGGGGRRRSALSEEEKRQRLA
EMETDAEKKVEQRLAQIKNEKEEEDTEQAEYKARAYENVDFIDSMNKKIY
TESQEDLEDRLRRNKHFRQKGNLDAKAFL*
back to top

mRNA from alignment at M-pyrifera_M_contig125980:56..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125980.5244.1 ID=mRNA_M-pyrifera_M_contig125980.5244.1|Name=mRNA_M-pyrifera_M_contig125980.5244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig125980:56..445+ (Macrocystis pyrifera P11B4 male)
AAGAGACAGAGAACTGGAGAAGAGACAGAGAGGAGGAGAGGCGACAGCTC
TGCGCCCAGGGAAAACTCACGCCCTGGCCCTGCGAGGGGTGGGGGTGGGG
GGAGGAGGAGGAGCGCACTGAGTGAGGAGGAAAAGAGACAGAGACTCGCG
GAGATGGAGACAGACGCAGAGAAGAAGGTGGAGCAGAGGTTGGCGCAGAT
CAAGAACGAGAAAGAGGAAGAGGACACTGAGCAGGCGGAGTACAAGGCCC
GCGCCTACGAGAACGTGGACTTCATCGACTCGATGAACAAGAAGATCTAC
ACCGAATCTCAGGAGGACCTCGAGGACCGACTCAGGCGCAACAAACACTT
CCGCCAGAAGGGAAACCTCGACGCCAAGGCTTTCCTCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125980:56..445+

>mRNA_M-pyrifera_M_contig125980.5244.1 ID=mRNA_M-pyrifera_M_contig125980.5244.1|Name=mRNA_M-pyrifera_M_contig125980.5244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig125980:56..445+ (Macrocystis pyrifera P11B4 male)
AAGAGACAGAGAACTGGAGAAGAGACAGAGAGGAGGAGAGGCGACAGCTC
TGCGCCCAGGGAAAACTCACGCCCTGGCCCTGCGAGGGGTGGGGGTGGGG
GGAGGAGGAGGAGCGCACTGAGTGAGGAGGAAAAGAGACAGAGACTCGCG
GAGATGGAGACAGACGCAGAGAAGAAGGTGGAGCAGAGGTTGGCGCAGAT
CAAGAACGAGAAAGAGGAAGAGGACACTGAGCAGGCGGAGTACAAGGCCC
GCGCCTACGAGAACGTGGACTTCATCGACTCGATGAACAAGAAGATCTAC
ACCGAATCTCAGGAGGACCTCGAGGACCGACTCAGGCGCAACAAACACTT
CCGCCAGAAGGGAAACCTCGACGCCAAGGCTTTCCTCTAGAAGAGACAGA
GAACTGGAGAAGAGACAGAGAGGAGGAGAGGCGACAGCTCTGCGCCCAGG
GAAAACTCACGCCCTGGCCCTGCGAGGGGTGGGGGTGGGGGGAGGAGGAG
GAGCGCACTGAGTGAGGAGGAAAAGAGACAGAGACTCGCGGAGATGGAGA
CAGACGCAGAGAAGAAGGTGGAGCAGAGGTTGGCGCAGATCAAGAACGAG
AAAGAGGAAGAGGACACTGAGCAGGCGGAGTACAAGGCCCGCGCCTACGA
GAACGTGGACTTCATCGACTCGATGAACAAGAAGATCTACACCGAATCTC
AGGAGGACCTCGAGGACCGACTCAGGCGCAACAAACACTTCCGCCAGAAG
GGAAACCTCGACGCCAAGGCTTTCCTCTAG
back to top