mRNA_M-pyrifera_M_contig125950.5242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125950.5242.1
Unique NamemRNA_M-pyrifera_M_contig125950.5242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A848WA75_9PROT (ATP-grasp domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA75_9PROT)

HSP 1 Score: 110 bits (275), Expect = 3.200e-25
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  121 VIACARARGIAVDRMGQGLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAV 450
            +I  AR RGI VDR+G GL VFG+GR+++  +  F+D+TSH+ F LSS+K+    LL+  G PVP Q  V +  +AV+AA  IG+PVV+KPL +D G GVS+ L D+ +V
Sbjct:  170 IIEAARVRGIPVDRLGDGLFVFGQGRFRKLHLRHFSDQTSHVGFVLSSNKSLTGRLLSEIGLPVPEQRVVTTRQQAVQAAEQIGYPVVLKPLDSDFGRGVSVGLEDSKSV 279          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A2N6CM97_9GAMM (Cyanophycin synthetase (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CM97_9GAMM)

HSP 1 Score: 103 bits (256), Expect = 1.140e-22
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   73 FNELAGRYTTTPSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            F   A R    PS  +++  A AR I   R+ Q  L  FG GRYQQR     T RTS+IA  L+SDK     +L   G PVP+Q+ VR A +A+RAA  IG+PVV+KPLA + G GV++NLR  + V  G+
Sbjct:  162 FIRFAQRREFGPSTASLVRAAEARNIPWLRLNQYSLVQFGHGRYQQRIQATTTGRTSNIAVELASDKEETNEILRDLGLPVPKQMIVREAQDAIRAAERIGYPVVLKPLAGNHGRGVAINLRTPEEVEAGF 292          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A7Y3FYM8_9GAMM (Cyanophycin synthetase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y3FYM8_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 1.060e-21
Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   73 FNELAGRYTTTPSAQAVIACARARGIAVDRM-GQGLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            F   A R    PS  +++  A AR I   R+ G  L  FG+GRYQQR     T RTS+IA  L+SDK     +L   G PVP Q+ V +A +AVRAA  IG+PVV+KPL+ + G GVS+NLR A  V  G+
Sbjct:  162 FIRFAQRREFGPSTSSLVRAAEARNIPWLRLNGYSLVQFGQGRYQQRIQATTTGRTSNIAVELASDKQETNGILRDLGLPVPAQVLVGTAQDAVRAAEKIGYPVVVKPLSGNHGRGVSINLRTAAEVETGF 292          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A6S6UH54_9GAMM (Cyanophycin synthase ) (Fragment) n=2 Tax=Thiotrichaceae TaxID=135617 RepID=A0A6S6UH54_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 1.410e-21
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   73 FNELAGRYTTTPSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAV 450
            F   A R    PS  +++  A AR I   R+    L  FG+G++QQR     T +T+HIA  +S DK    +LL+  G PVPRQ  ++SA++AVRAA  IGFPVV+KPL  + G GVS+NLR  D V
Sbjct:  163 FIRFAQRKEFGPSTASLVQAAEARDIPWIRLNNYSLVQFGQGKHQQRIQATITSQTNHIAVEISCDKEDTHNLLSDLGLPVPRQQMIQSAEQAVRAANRIGFPVVVKPLNANHGRGVSINLRSDDEV 289          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A2W4K686_9FIRM (Cyanophycin synthetase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K686_9FIRM)

HSP 1 Score: 100 bits (248), Expect = 1.440e-21
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  106 PSAQAVIACARARGIAVDRMGQG-LAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            PS  A+   AR RGI V+R+G G L V G G +Q+R     TDRTS +A  ++ DK     +L+  G PVP  L  R+ DEAV+AA AIG+PVV+KP+  ++G GV+LNL+D   VR  +
Sbjct:  159 PSTSAIEKEARERGIPVNRIGDGSLLVLGYGAFQRRVEATLTDRTSAVAVDVACDKILTKKMLSLAGIPVPEGLPARTEDEAVKAAEAIGYPVVVKPVDGNQGQGVNLNLKDEKEVREAF 278          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A523M970_9GAMM (Cyanophycin synthetase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M970_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 1.450e-21
Identity = 61/131 (46.56%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   73 FNELAGRYTTTPSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            F   A R    PS  +++  A  R I   R+ +  L  FG GRYQQR     T RTS+IA  L+SDK     +L   G PVP+Q+ VRSA +AVRAAT IG PVV+KPLA + G GV++NLR    V  G+
Sbjct:  162 FIRYAQRREFGPSTASLVKAAEDRNIPWLRLNRHSLVQFGHGRYQQRIQATTTGRTSNIAVELASDKEETNSILRDLGLPVPKQIVVRSARDAVRAATRIGLPVVLKPLAGNHGRGVAINLRTDSEVEAGF 292          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: A0A2N5K2B9_9CHLR (Cyanophycin synthetase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2N5K2B9_9CHLR)

HSP 1 Score: 99.0 bits (245), Expect = 3.660e-21
Identity = 62/132 (46.97%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   70 EFNELAGRYTTTPSAQAVIACARARGIAVDRMG-QGLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            E   LA R    P+ Q+++  A  RGI   R+  Q L   G G+YQ R     T RTS+IA   +SDK     LL   G PVPR + VRSA+EAV AA   G+PVV KPL    G GVSLNL+DA+ VR G+
Sbjct:  172 ELIVLAQRLALGPTTQSLVDEACQRGIPAIRLDEQSLVQLGYGKYQHRIRASVTSRTSNIAVETASDKELTNRLLDDVGLPVPRNMLVRSAEEAVAAAERFGYPVVTKPLDVSHGRGVSLNLQDAEQVRWGY 303          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: UPI0009FFA708 (cyanophycin synthetase n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI0009FFA708)

HSP 1 Score: 98.2 bits (243), Expect = 6.660e-21
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   70 EFNELAGRYTTTPSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            E    A R+T  P+  +++  A  RGI   R+ +  L   G G+YQ++     T  T HIA   +SDK     +L   G PVP+   VRSADEA RAA+ +GFPVV KPL  + G GV+L+L D + VRRG+
Sbjct:   20 ELRRAARRHTLGPTTASLVNEAERRGIPTLRLDEHSLVQLGYGKYQRQIRASITSLTPHIATSTASDKDLTKQMLDRAGLPVPKGAVVRSADEAARAASRLGFPVVTKPLDGNHGRGVTLDLHDEEGVRRGF 151          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: UPI0009FBF40A (cyanophycin synthetase n=1 Tax=Marmoricola aequoreus TaxID=397278 RepID=UPI0009FBF40A)

HSP 1 Score: 98.2 bits (243), Expect = 6.830e-21
Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  106 PSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            PS QA++  A +R I   R+ Q  L   G+G + QR     T  TS IA  ++SDK     LLA+ G PVP+Q  VRSAD+AVR A  IG+PVV+KPL  + G GV L+L+DADAVR  +
Sbjct:  187 PSTQAILDEAVSRDIPWIRLNQHSLVQLGQGVHAQRIRATMTSETSSIAVDIASDKDLTTKLLAAAGLPVPKQDSVRSADQAVRVAERIGYPVVVKPLDGNHGRGVCLDLQDADAVREAF 306          
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Match: UPI001F0F0162 (cyanophycin synthetase n=1 Tax=Deinococcus sp. Arct2-2 TaxID=2568653 RepID=UPI001F0F0162)

HSP 1 Score: 98.2 bits (243), Expect = 6.840e-21
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  106 PSAQAVIACARARGIAVDRMGQ-GLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASRGFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAVRRGW 462
            P+  +++  AR RGI V RM +  +  FG G+ QQR     T  TSH+A   +S+K     LL+  G PVPR + VRSADEAVR A  +GFP+V KPL  + G GVS +L   D VR G+
Sbjct:  207 PTTTSLVQAARRRGIPVTRMDELSMIQFGYGKNQQRIRASITGHTSHVAVDAASNKNLTKQLLSDAGVPVPRGVVVRSADEAVREAARLGFPLVTKPLNGNHGRGVSTHLTTPDEVRSGF 326          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125950.5242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A848WA75_9PROT3.200e-2550.00ATP-grasp domain-containing protein n=1 Tax=Alphap... [more]
A0A2N6CM97_9GAMM1.140e-2245.80Cyanophycin synthetase (Fragment) n=1 Tax=Chromati... [more]
A0A7Y3FYM8_9GAMM1.060e-2146.56Cyanophycin synthetase n=1 Tax=Woeseiaceae bacteri... [more]
A0A6S6UH54_9GAMM1.410e-2145.67Cyanophycin synthase ) (Fragment) n=2 Tax=Thiotric... [more]
A0A2W4K686_9FIRM1.440e-2146.67Cyanophycin synthetase n=1 Tax=Firmicutes bacteriu... [more]
A0A523M970_9GAMM1.450e-2146.56Cyanophycin synthetase n=1 Tax=Gammaproteobacteria... [more]
A0A2N5K2B9_9CHLR3.660e-2146.97Cyanophycin synthetase n=1 Tax=Chloroflexi bacteri... [more]
UPI0009FFA7086.660e-2142.42cyanophycin synthetase n=1 Tax=Deinococcus pimensi... [more]
UPI0009FBF40A6.830e-2148.33cyanophycin synthetase n=1 Tax=Marmoricola aequore... [more]
UPI001F0F01626.840e-2145.83cyanophycin synthetase n=1 Tax=Deinococcus sp. Arc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125950contigM-pyrifera_M_contig125950:50..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.1
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog216594.MMAR_2406
Preferred namecphA
KEGG rclassRC00064,RC00090
KEGG koko:K01928,ko:K03802
KEGG ReactionR02788
KEGG Pathwayko00300,ko00550,map00300,map00550
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetyltransferase
EggNOG OGs2356T@1762,2GN0U@201174,COG0189@1,COG0189@2,COG0769@1,COG0769@2
EC6.3.2.13,6.3.2.29,6.3.2.30
COG Functional cat.HJK
Best tax levelMycobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.9828672-CDS-M-pyrifera_M_contig125950:49..5111622815774.9828672-CDS-M-pyrifera_M_contig125950:49..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125950 50..511 +
1692277563.5790699-CDS-M-pyrifera_M_contig125950:49..5111692277563.5790699-CDS-M-pyrifera_M_contig125950:49..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125950 50..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125950.5242.1prot_M-pyrifera_M_contig125950.5242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125950 50..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125950.5242.1

>prot_M-pyrifera_M_contig125950.5242.1 ID=prot_M-pyrifera_M_contig125950.5242.1|Name=mRNA_M-pyrifera_M_contig125950.5242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LALIRGAIGDPESMRVLHERVNREFNELAGRYTTTPSAQAVIACARARGI
AVDRMGQGLAVFGEGRYQQRRIHGFTDRTSHIAFGLSSDKTAALHLLASR
GFPVPRQLQVRSADEAVRAATAIGFPVVMKPLANDRGNGVSLNLRDADAV
RRGW
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mRNA from alignment at M-pyrifera_M_contig125950:50..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125950.5242.1 ID=mRNA_M-pyrifera_M_contig125950.5242.1|Name=mRNA_M-pyrifera_M_contig125950.5242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig125950:50..511+ (Macrocystis pyrifera P11B4 male)
CTCGCATTAATCCGGGGAGCCATCGGCGATCCCGAATCGATGCGAGTCTT GCACGAGCGCGTAAACCGAGAATTCAACGAGCTCGCCGGACGCTATACGA CGACCCCGTCGGCACAGGCGGTCATCGCCTGTGCGCGAGCGCGCGGAATC GCGGTCGACCGCATGGGTCAGGGGCTGGCCGTTTTCGGCGAAGGTCGTTA TCAGCAACGACGCATACATGGTTTTACCGATCGCACGAGCCATATCGCGT TTGGTCTGTCGTCGGACAAGACCGCGGCGCTGCACCTGCTCGCGAGCCGC GGGTTTCCCGTGCCACGACAACTGCAGGTACGCTCGGCCGACGAAGCGGT GCGTGCGGCCACCGCGATCGGATTTCCGGTCGTGATGAAACCGCTCGCGA ACGATCGCGGCAACGGCGTATCGCTGAATTTGCGCGATGCGGATGCGGTC AGGCGCGGATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125950:50..511+

>mRNA_M-pyrifera_M_contig125950.5242.1 ID=mRNA_M-pyrifera_M_contig125950.5242.1|Name=mRNA_M-pyrifera_M_contig125950.5242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig125950:50..511+ (Macrocystis pyrifera P11B4 male)
CTCGCATTAATCCGGGGAGCCATCGGCGATCCCGAATCGATGCGAGTCTT
GCACGAGCGCGTAAACCGAGAATTCAACGAGCTCGCCGGACGCTATACGA
CGACCCCGTCGGCACAGGCGGTCATCGCCTGTGCGCGAGCGCGCGGAATC
GCGGTCGACCGCATGGGTCAGGGGCTGGCCGTTTTCGGCGAAGGTCGTTA
TCAGCAACGACGCATACATGGTTTTACCGATCGCACGAGCCATATCGCGT
TTGGTCTGTCGTCGGACAAGACCGCGGCGCTGCACCTGCTCGCGAGCCGC
GGGTTTCCCGTGCCACGACAACTGCAGGTACGCTCGGCCGACGAAGCGGT
GCGTGCGGCCACCGCGATCGGATTTCCGGTCGTGATGAAACCGCTCGCGA
ACGATCGCGGCAACGGCGTATCGCTGAATTTGCGCGATGCGGATGCGGTC
AGGCGCGGATGGCTCGCATTAATCCGGGGAGCCATCGGCGATCCCGAATC
GATGCGAGTCTTGCACGAGCGCGTAAACCGAGAATTCAACGAGCTCGCCG
GACGCTATACGACGACCCCGTCGGCACAGGCGGTCATCGCCTGTGCGCGA
GCGCGCGGAATCGCGGTCGACCGCATGGGTCAGGGGCTGGCCGTTTTCGG
CGAAGGTCGTTATCAGCAACGACGCATACATGGTTTTACCGATCGCACGA
GCCATATCGCGTTTGGTCTGTCGTCGGACAAGACCGCGGCGCTGCACCTG
CTCGCGAGCCGCGGGTTTCCCGTGCCACGACAACTGCAGGTACGCTCGGC
CGACGAAGCGGTGCGTGCGGCCACCGCGATCGGATTTCCGGTCGTGATGA
AACCGCTCGCGAACGATCGCGGCAACGGCGTATCGCTGAATTTGCGCGAT
GCGGATGCGGTCAGGCGCGGATGG
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