mRNA_M-pyrifera_M_contig125944.5241.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: V4AYP6_LOTGI (Transcription initiation factor IIB n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AYP6_LOTGI) HSP 1 Score: 92.4 bits (228), Expect = 2.070e-19 Identity = 56/167 (33.53%), Postives = 94/167 (56.29%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 501
D AG ++C +CG VV DRVI EWRTF+ D A DASRVG AA++ L +T +AA P G+ S R ++ + D+ L+ + E+++++D+L + + + F ++ G +LRG A+ +A V++AC+Q+ R KE V+ + ++ + R
Sbjct: 25 DHHAGDMICPECGLVVGDRVIDVGSEWRTFSNDKDAKDASRVG-AAENSLLDGGDLSTMIAAVPGGEDSGYRNRR----TISSSDRTLISAFKEINQMADRLNLPKMIADRGSTLFKTVHEGKSLRGRSNDAIVSACVYIACRQEGVPRTFKEICAVSKISKKEIGR 186
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A0G4IK27_PLABS (TFIIB-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IK27_PLABS) HSP 1 Score: 92.8 bits (229), Expect = 2.240e-19 Identity = 63/169 (37.28%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSA--PDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 501
D + G VC DCG VV DR+I++E EWRTF++D A D +RVG D+ L + TG+AA P+ +S+ K +SLAS +K ++ G++E+ ++ S++V +AKE F +M+ LRG + A +F+AC+ Q R RKE + V R L R
Sbjct: 34 DSSGGKFVCTDCGIVVGDRLITDESEWRTFSSDHGAGGDDRNRVG-GPDNPLFEDRELTTGIAADPSNMNSVLGKW-QSLASGRGSEKTIIEGFSEIGEFGHRMDLSDSVQYRAKEIFKQMHETKKLRGRPRNLIVTACLFIACQGQNVDRSRKEFCRITDVDLRDLGR 200
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A0H5R7B4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7B4_9EUKA) HSP 1 Score: 82.8 bits (203), Expect = 1.020e-15 Identity = 56/169 (33.14%), Postives = 91/169 (53.85%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSA--PDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 501
D + G VC DCG V+ DR+I++E EWRTF++D A D +R+G D+ L + +G+AA + S K +S+A+ ++ LL G+AE+ ++ S++V +AKE F M+ LRG + + +F+AC+ + R RKE + + R L R
Sbjct: 31 DPSGGKYVCVDCGLVLGDRLITDESEWRTFSSDHGAGGDDRNRIG-GPDNPLFEDRELTSGIAADSSNMGSALGKW-QSMAAGRGSERSLLDGFAEIGEFGHRMDLSDSVQLRAKEIFKRMHESKLLRGRNRLLIVTSCLFVACRDENVDRSRKEMCRITDIDLRDLGR 197
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: L2GT21_VAVCU (TFIIB-type domain-containing protein n=2 Tax=Pleistophoridae TaxID=35232 RepID=L2GT21_VAVCU) HSP 1 Score: 75.5 bits (184), Expect = 3.640e-13 Identity = 52/168 (30.95%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDS-SLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 501
D G V+C +CGC++++ +I E+ EWRTF D SA D SRVG ++ L + +T +A N S +L R KS ++ ++QL+ G+ + D+ S+ + +AK F ++ L+G L + AA +++AC+Q+++ R KE +++ V ++ + R
Sbjct: 24 DTKTGAVLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVG-CPNNPLLESEPLDTMIANIGNLHSYTLNRTQMKS--TMRGPERQLINGFNLISAYCDRSNISKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGR 186
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A1W4XK50_AGRPL (Transcription initiation factor IIB n=2 Tax=Endopterygota TaxID=33392 RepID=A0A1W4XK50_AGRPL) HSP 1 Score: 72.8 bits (177), Expect = 2.910e-12 Identity = 45/164 (27.44%), Postives = 87/164 (53.05%), Query Frame = 1
Query: 19 VVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAA---AQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVAGVRERALNR 501
++C +CG VV DRVI EWRTF+++ S D SRVG + L+ + G A + +AR + ++ + D+ L+ + E++ ++D++ +V +A F +++ G L+G A+ +A +++AC+Q+ R KE V+ + ++ + R
Sbjct: 1 MICSECGLVVGDRVIDVGSEWRTFSSEKSGVDPSRVGGPENPLLNGSDLTTMIGPGRGDASFDEFGMARYQNRR--TMSSSDRALINAFKEINSMADRINLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 162
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A388LSS5_CHABU (TFIIB-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LSS5_CHABU) HSP 1 Score: 66.2 bits (160), Expect = 8.230e-10 Identity = 43/158 (27.22%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVA 474
D AAG ++C++CG V++ I E EWRTFT ++ D RVG ++ L+ + + PNG +A + D+ L+ + + ++++L + +A E + ++ ++RG A+ AA +++AC+Q+ R KE VA
Sbjct: 17 DHAAGDMICKECGLVLESHSIDETSEWRTFTNEAGNTDPVRVGGPSNPLLTDGGLST--IISRPNGGGEIAGNLGRWQNRGANPDRNLINAFRSIAGMAERLGLVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDRPRTFKEICAVA 172
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A7R9VQN9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQN9_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 1.040e-9 Identity = 48/148 (32.43%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTT-DSSAPDASRVGRAADSKLSAAAQFNT-GVAAAPNGDS-SLARKHAKSLASLGAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQ 435
D A G VVCR CG VV + +I E EWRTF+ D D +RVG ++ L A G G+S SL+R HA+S A D+ ++ + + + ++L + +A E + E ++G A+ A V+LAC+Q+
Sbjct: 23 DHAQGDVVCRGCGLVVQEHIIDERSEWRTFSDKDKEGTDPNRVGGPSNPLLGGAGLSTVIGKVQGDAGNSFSLSRLHARS-----AQDRNMMAAFKLIGNMCEQLTVVNTIKDRACELYKEAMSTGAMKGKGTQAVAAGCVYLACRQE 165
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A7S0R574_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R574_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 9.140e-9 Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFT-TDSSAPDASRVGRAADSKLSAAAQFNTGVAAAPNGDSSLARKHAKSLASL---GAG-DKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGEMNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKEAALVA 474
D +AG ++C +CG V++ R I E EWRTF+ +D ++ D SRVG + L +T + GDSS A +LA L G+ D+ L+ ++ + ++D+L + +A E + ++ ++RG +A+ AA +++AC+Q+ R KE VA
Sbjct: 27 DHSAGDLICTNCGLVLEARTIDESTEWRTFSNSDGNSQDPSRVGGPTNPLLRDGG-LSTVIG---KGDSS--GSAATALARLQHRGSNPDRNLISAFSAIGEMADRLGLVPTIKDRANENYRDIAEHKSIRGRSASAIHAACLYIACRQEDRPRTFKEICSVA 183
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: A0A2A9M9A6_9APIC (Transcription initiation factor IIB n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M9A6_9APIC) HSP 1 Score: 62.4 bits (150), Expect = 2.600e-8 Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSAP-----DASRVGRAADSKLSAAAQFNTGVAAAPNGD-SSLARKHAKSLASL------------GAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGE-MNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKE 459
D ++G +CR+CG +V+++V+SEE EWR F+ ++++ D +RVG A DS L T + A+ G + A AK L L G+GD+QL + + + + + V+ +AKE + M G+ LR A ++LAC++ R KE
Sbjct: 149 DSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNRVGDALDSWLEDGGIGTTMLVASGGGPLAGKAASSAKRLQQLHEATTAGLGSGAGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNATTMLAIIYLACREAGITRTVKE 320
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Match: S7UPQ1_TOXGG (Transcription initiation factor IIB n=17 Tax=Toxoplasma gondii TaxID=5811 RepID=S7UPQ1_TOXGG) HSP 1 Score: 61.6 bits (148), Expect = 4.740e-8 Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1
Query: 1 DKAAGMVVCRDCGCVVDDRVISEECEWRTFTTDSSAP-----DASRVGRAADSKLSAAAQFNTGVAAAPNGD-SSLARKHAKSLASL------------GAGDKQLLRGYAEVDRLSDKLRASEAVVAQAKEYFGE-MNGGLTLRGLRLTAMCAATVFLACKQQRAVRLRKE 459
D ++G +CR+CG +V+++V+SEE EWR F+ ++++ D +RVG A D+ L T + A+ G + A AK L L G+GD+QL + + + + + V+ +AKE + M G+ LR T A +LAC++ R KE
Sbjct: 127 DSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNRVGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGVTRTVKE 298 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125944.5241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125944.5241.1 >prot_M-pyrifera_M_contig125944.5241.1 ID=prot_M-pyrifera_M_contig125944.5241.1|Name=mRNA_M-pyrifera_M_contig125944.5241.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp MVVCRDCGCVVDDRVISEECEWRTFTTDSSAPDASRVGRAADSKLSAAAQback to top mRNA from alignment at M-pyrifera_M_contig125944:1..501- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125944.5241.1 ID=mRNA_M-pyrifera_M_contig125944.5241.1|Name=mRNA_M-pyrifera_M_contig125944.5241.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125944:1..501- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125944:1..501- >mRNA_M-pyrifera_M_contig125944.5241.1 ID=mRNA_M-pyrifera_M_contig125944.5241.1|Name=mRNA_M-pyrifera_M_contig125944.5241.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig125944:1..501- (Macrocystis pyrifera P11B4 male)back to top |