mRNA_M-pyrifera_M_contig125922.5236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125922.5236.1
Unique NamemRNA_M-pyrifera_M_contig125922.5236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A7Y2DA54_9ACTN (Guanine-specific ribonuclease N1 and T1 n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DA54_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 8.250e-39
Identity = 64/92 (69.57%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   40 RFSDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            RFS+LPT+S  ELP EA+DTL LI +GGPYPY +DD  FQNREGILPD   GHYREYT++TPG  DRGARR V G  G +YYTDDHY SF E
Sbjct:   66 RFSELPTVSIDELPPEALDTLILIRNGGPYPYRQDDGVFQNREGILPDHPRGHYREYTIETPGSPDRGARRFVVGERGEIYYTDDHYSSFRE 157
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BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A7Y2IJH4_9ACTN (Ribonuclease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IJH4_9ACTN)

HSP 1 Score: 133 bits (334), Expect = 8.670e-38
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   40 RFSDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            ++S+LP++  ++LP EA DTL+LIA  GP+PY +D  TFQNREGILPD   GHYREYTV TPGESDRGARRIVAGA G LYYTDDHY SF E
Sbjct:   53 QYSELPSVLVTKLPAEAWDTLELIAGDGPFPYDRDGLTFQNREGILPDLERGHYREYTVRTPGESDRGARRIVAGAHGELYYTDDHYASFRE 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A847MU84_9MICO (Uncharacterized protein n=1 Tax=Intrasporangiaceae bacterium TaxID=2021373 RepID=A0A847MU84_9MICO)

HSP 1 Score: 132 bits (331), Expect = 1.840e-37
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            S LPTI+ S+LP EA DT+ LI  GGP+PY +DDSTF NREGILPD+  G+YREYTV+TPG  DRGARRIVAG DG LY+TDDHYDSF +
Sbjct:   45 SGLPTIAESDLPPEAWDTMQLIYDGGPFPYRQDDSTFFNREGILPDQRRGYYREYTVETPGSHDRGARRIVAGEDGDLYWTDDHYDSFRQ 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: UPI001CA4186E (ribonuclease n=1 Tax=Nocardioides sp. SCSIO 67246 TaxID=2872154 RepID=UPI001CA4186E)

HSP 1 Score: 126 bits (316), Expect = 1.200e-35
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:   52 LPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSF 309
            LPT+  +ELP EA  TLDLI  GGPYPY++DD TF NREG+LPD   GHYREYTV+TPG  DRGARRIVAG+DG  ++TDDHY SF
Sbjct:   13 LPTVEVAELPPEARTTLDLIERGGPYPYAQDDGTFFNREGLLPDRPEGHYREYTVETPGSPDRGARRIVAGSDGERFWTDDHYASF 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: UPI002016D933 (ribonuclease N1 n=1 Tax=Nocardioides sp. SCSIO 67246 TaxID=2872154 RepID=UPI002016D933)

HSP 1 Score: 126 bits (316), Expect = 3.500e-35
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:   52 LPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSF 309
            LPT+  +ELP EA  TLDLI  GGPYPY++DD TF NREG+LPD   GHYREYTV+TPG  DRGARRIVAG+DG  ++TDDHY SF
Sbjct:   49 LPTVEVAELPPEARTTLDLIERGGPYPYAQDDGTFFNREGLLPDRPEGHYREYTVETPGSPDRGARRIVAGSDGERFWTDDHYASF 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A1H1PJ24_9ACTN (Ribonuclease T1 n=1 Tax=Microlunatus soli TaxID=630515 RepID=A0A1H1PJ24_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 5.390e-35
Identity = 65/90 (72.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAG-ADGALYYTDDHYDSFS 312
            S LP IS  +LP EA DTL LI  GGP+PY KD +TF NREGILPDEA G YREYTV TPGE DRGARRIV G  D   YYTDDHYDSFS
Sbjct:   37 SGLPYISQDQLPAEARDTLQLIDDGGPFPYDKDGATFGNREGILPDEANGFYREYTVPTPGEDDRGARRIVTGDQDTIFYYTDDHYDSFS 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A7C6HS32_9MICO (Uncharacterized protein n=1 Tax=Intrasporangiaceae bacterium TaxID=2021373 RepID=A0A7C6HS32_9MICO)

HSP 1 Score: 127 bits (319), Expect = 5.630e-35
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            S LP I+ S+LP +A +TL LI +GGPYPY +DDSTF NREGILP +  G+YREYTV TP   DRGARRIVAGADG LYYTDDHYDSF++
Sbjct:   98 SGLPWIAESDLPPQAWETLRLIEAGGPYPYRQDDSTFFNREGILPSQRRGYYREYTVQTPRSRDRGARRIVAGADGDLYYTDDHYDSFAQ 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A852XGA0_9MICO (Ribonuclease T1 n=1 Tax=Janibacter alkaliphilus TaxID=1069963 RepID=A0A852XGA0_9MICO)

HSP 1 Score: 125 bits (313), Expect = 1.420e-34
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            S LPTI+ S LP EA +TL LI +GGPYPY +DD TF NREG+LPD  GG+YREYTV+T GE DRGARRIV GADG  Y+T DHY SF +
Sbjct:   57 SGLPTIAESALPAEAHETLRLIRAGGPYPYDQDDETFGNREGLLPDRPGGYYREYTVETSGEDDRGARRIVTGADGDRYFTRDHYASFEQ 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A0A0J3H5_9MICO (Ribonuclease n=2 Tax=Knoellia TaxID=136099 RepID=A0A0A0J3H5_9MICO)

HSP 1 Score: 124 bits (312), Expect = 2.330e-34
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            S L TI+ S LP EA  TL+LI +GGPYPY +DD TFQNREGILP +  G+YREYTV+TPG  DRGARRIV G DG  Y+TDDHYDSF +
Sbjct:   62 SGLETIAESRLPREAHATLELIRAGGPYPYDQDDRTFQNREGILPQQKRGYYREYTVETPGSDDRGARRIVTGRDGDKYWTDDHYDSFRQ 151
[Close]
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Match: A0A077MCQ9_9MICO (Guanyl-specific ribonuclease SA n=1 Tax=Tetrasphaera jenkinsii Ben 74 TaxID=1193518 RepID=A0A077MCQ9_9MICO)

HSP 1 Score: 124 bits (311), Expect = 3.600e-34
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   46 SDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDSTFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHYDSFSE 315
            S + TI+ S+LP EA  TLDLI +GGPYPY +DD TF NRE ILP +  G+YREYTV+TPG  DRGARRI+ GADG  YYTDDHYDSF +
Sbjct:   65 SGMDTIAESQLPREARHTLDLIRAGGPYPYHQDDQTFGNRERILPRQRAGYYREYTVETPGSEDRGARRIIGGADGDRYYTDDHYDSFRQ 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125922.5236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DA54_9ACTN8.250e-3969.57Guanine-specific ribonuclease N1 and T1 n=1 Tax=Ac... [more]
A0A7Y2IJH4_9ACTN8.670e-3870.65Ribonuclease n=1 Tax=Acidimicrobiales bacterium Ta... [more]
A0A847MU84_9MICO1.840e-3771.11Uncharacterized protein n=1 Tax=Intrasporangiaceae... [more]
UPI001CA4186E1.200e-3569.77ribonuclease n=1 Tax=Nocardioides sp. SCSIO 67246 ... [more]
UPI002016D9333.500e-3569.77ribonuclease N1 n=1 Tax=Nocardioides sp. SCSIO 672... [more]
A0A1H1PJ24_9ACTN5.390e-3572.22Ribonuclease T1 n=1 Tax=Microlunatus soli TaxID=63... [more]
A0A7C6HS32_9MICO5.630e-3570.00Uncharacterized protein n=1 Tax=Intrasporangiaceae... [more]
A0A852XGA0_9MICO1.420e-3467.78Ribonuclease T1 n=1 Tax=Janibacter alkaliphilus Ta... [more]
A0A0A0J3H5_9MICO2.330e-3467.78Ribonuclease n=2 Tax=Knoellia TaxID=136099 RepID=A... [more]
A0A077MCQ9_9MICO3.600e-3466.67Guanyl-specific ribonuclease SA n=1 Tax=Tetrasphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125922contigM-pyrifera_M_contig125922:198..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score126.7
Seed ortholog evalue6.3e-27
Seed eggNOG ortholog1385520.N802_19315
Preferred namernaSA
KEGG koko:K01167,ko:K15125
KEGG Pathwayko05133,map05133
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576
EggNOG free text desc.Ribonuclease
EggNOG OGs2IHPV@201174,4FHS8@85021,COG4290@1,COG4290@2
EC3.1.27.3
COG Functional cat.F
Best tax levelIntrasporangiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko03016,ko03019
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.749044-CDS-M-pyrifera_M_contig125922:197..5121622815774.749044-CDS-M-pyrifera_M_contig125922:197..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125922 198..512 +
1692277563.4520369-CDS-M-pyrifera_M_contig125922:197..5121692277563.4520369-CDS-M-pyrifera_M_contig125922:197..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125922 198..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125922.5236.1prot_M-pyrifera_M_contig125922.5236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125922 198..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125922.5236.1

>prot_M-pyrifera_M_contig125922.5236.1 ID=prot_M-pyrifera_M_contig125922.5236.1|Name=mRNA_M-pyrifera_M_contig125922.5236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
AEADESDDAAPSQRFSDLPTISPSELPIEAIDTLDLIASGGPYPYSKDDS
TFQNREGILPDEAGGHYREYTVDTPGESDRGARRIVAGADGALYYTDDHY
DSFSE
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mRNA from alignment at M-pyrifera_M_contig125922:198..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125922.5236.1 ID=mRNA_M-pyrifera_M_contig125922.5236.1|Name=mRNA_M-pyrifera_M_contig125922.5236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig125922:198..512+ (Macrocystis pyrifera P11B4 male)
GCCGAAGCCGACGAGAGCGACGATGCTGCCCCCAGCCAGCGGTTCAGCGA
TCTTCCGACCATCTCTCCGAGCGAACTCCCGATCGAGGCGATCGACACCC
TCGACCTGATCGCGTCCGGTGGCCCCTACCCGTACTCGAAAGACGACTCC
ACCTTCCAGAACCGTGAGGGCATCCTCCCCGACGAGGCCGGCGGGCACTA
TCGGGAGTACACCGTCGACACCCCGGGTGAAAGCGACCGCGGCGCCCGTC
GCATCGTGGCCGGGGCCGACGGAGCGCTGTACTACACCGACGATCACTAC
GACTCGTTCTCCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125922:198..512+

>mRNA_M-pyrifera_M_contig125922.5236.1 ID=mRNA_M-pyrifera_M_contig125922.5236.1|Name=mRNA_M-pyrifera_M_contig125922.5236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig125922:198..512+ (Macrocystis pyrifera P11B4 male)
GCCGAAGCCGACGAGAGCGACGATGCTGCCCCCAGCCAGCGGTTCAGCGA
TCTTCCGACCATCTCTCCGAGCGAACTCCCGATCGAGGCGATCGACACCC
TCGACCTGATCGCGTCCGGTGGCCCCTACCCGTACTCGAAAGACGACTCC
ACCTTCCAGAACCGTGAGGGCATCCTCCCCGACGAGGCCGGCGGGCACTA
TCGGGAGTACACCGTCGACACCCCGGGTGAAAGCGACCGCGGCGCCCGTC
GCATCGTGGCCGGGGCCGACGGAGCGCTGTACTACACCGACGATCACTAC
GACTCGTTCTCCGAGGCCGAAGCCGACGAGAGCGACGATGCTGCCCCCAG
CCAGCGGTTCAGCGATCTTCCGACCATCTCTCCGAGCGAACTCCCGATCG
AGGCGATCGACACCCTCGACCTGATCGCGTCCGGTGGCCCCTACCCGTAC
TCGAAAGACGACTCCACCTTCCAGAACCGTGAGGGCATCCTCCCCGACGA
GGCCGGCGGGCACTATCGGGAGTACACCGTCGACACCCCGGGTGAAAGCG
ACCGCGGCGCCCGTCGCATCGTGGCCGGGGCCGACGGAGCGCTGTACTAC
ACCGACGATCACTACGACTCGTTCTCCGAG
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