mRNA_M-pyrifera_M_contig125827.5231.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125827.5231.1
Unique NamemRNA_M-pyrifera_M_contig125827.5231.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125827.5231.1 vs. uniprot
Match: A0A1G0Z2X8_9BACT (Uncharacterized protein n=2 Tax=Lentisphaerae TaxID=256845 RepID=A0A1G0Z2X8_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.920e-5
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:    1 LRFDMSNRDFLDDVSNTVVKDLTASGVANRV--IAADNEDLLPPLNANDMILRLGLEEGIWHRRVTTYGLSAYGVYAW-LVAPVSYGHLELGIAARLEDSQ-------GRFIAEQS 318
            +++D    D  D +   + +DL  SG+   V  +  D     P       ++++ + E +W+R +TTYGL+  G   W L  P+SYG + + I A L D+Q       G+F AE S
Sbjct:   88 MKYDYFRPDLQDMLQILIARDLRFSGIFQNVKPVRFDESSEKPVFG---YVVKIWINEAVWNRYLTTYGLAFPGTMLWSLGLPMSYGSVSMEIEADLIDAQTKNSIAKGKFRAETS 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125827.5231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G0Z2X8_9BACT6.920e-530.17Uncharacterized protein n=2 Tax=Lentisphaerae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125827contigM-pyrifera_M_contig125827:23..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.4375231-UTR-M-pyrifera_M_contig125827:22..341622815774.4375231-UTR-M-pyrifera_M_contig125827:22..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125827 23..34 +
1692277563.2872071-UTR-M-pyrifera_M_contig125827:22..341692277563.2872071-UTR-M-pyrifera_M_contig125827:22..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125827 23..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.4487152-CDS-M-pyrifera_M_contig125827:34..4481622815774.4487152-CDS-M-pyrifera_M_contig125827:34..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125827 35..448 +
1692277563.2964113-CDS-M-pyrifera_M_contig125827:34..4481692277563.2964113-CDS-M-pyrifera_M_contig125827:34..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125827 35..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125827.5231.1prot_M-pyrifera_M_contig125827.5231.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125827 35..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125827.5231.1

>prot_M-pyrifera_M_contig125827.5231.1 ID=prot_M-pyrifera_M_contig125827.5231.1|Name=mRNA_M-pyrifera_M_contig125827.5231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MSNRDFLDDVSNTVVKDLTASGVANRVIAADNEDLLPPLNANDMILRLGL
EEGIWHRRVTTYGLSAYGVYAWLVAPVSYGHLELGIAARLEDSQGRFIAE
QSFDSREKVIEWFHVGDPLGKRLPMAYGQISPGLRQLV
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mRNA from alignment at M-pyrifera_M_contig125827:23..448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125827.5231.1 ID=mRNA_M-pyrifera_M_contig125827.5231.1|Name=mRNA_M-pyrifera_M_contig125827.5231.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig125827:23..448+ (Macrocystis pyrifera P11B4 male)
CTGCGATTCGACATGAGCAACCGAGATTTTCTGGACGATGTGTCGAACAC
CGTCGTTAAAGACTTAACAGCATCCGGGGTCGCGAATAGGGTCATCGCTG
CTGACAATGAAGATCTGCTGCCGCCACTCAATGCCAACGATATGATCCTT
CGTCTCGGCTTGGAAGAAGGCATCTGGCACCGAAGAGTTACGACCTATGG
TCTCTCGGCCTATGGAGTGTATGCATGGCTCGTGGCACCTGTTTCTTATG
GCCACCTCGAATTGGGCATCGCAGCAAGACTGGAAGATTCCCAGGGACGC
TTCATTGCTGAGCAGAGTTTCGACAGTCGTGAGAAAGTGATCGAGTGGTT
TCACGTTGGTGATCCGCTCGGGAAACGTCTGCCGATGGCCTATGGCCAGA
TCTCTCCGGGCTTGCGCCAGTTGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125827:23..448+

>mRNA_M-pyrifera_M_contig125827.5231.1 ID=mRNA_M-pyrifera_M_contig125827.5231.1|Name=mRNA_M-pyrifera_M_contig125827.5231.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig125827:23..448+ (Macrocystis pyrifera P11B4 male)
ATGAGCAACCGAGATTTTCTGGACGATGTGTCGAACACCGTCGTTAAAGA
CTTAACAGCATCCGGGGTCGCGAATAGGGTCATCGCTGCTGACAATGAAG
ATCTGCTGCCGCCACTCAATGCCAACGATATGATCCTTCGTCTCGGCTTG
GAAGAAGGCATCTGGCACCGAAGAGTTACGACCTATGGTCTCTCGGCCTA
TGGAGTGTATGCATGGCTCGTGGCACCTGTTTCTTATGGCCACCTCGAAT
TGGGCATCGCAGCAAGACTGGAAGATTCCCAGGGACGCTTCATTGCTGAG
CAGAGTTTCGACAGTCGTGAGAAAGTGATCGAGTGGTTTCACGTTGGTGA
TCCGCTCGGGAAACGTCTGCCGATGGCCTATGGCCAGATCTCTCCGGGCT
TGCGCCAGTTGGTAATGAGCAACCGAGATTTTCTGGACGATGTGTCGAAC
ACCGTCGTTAAAGACTTAACAGCATCCGGGGTCGCGAATAGGGTCATCGC
TGCTGACAATGAAGATCTGCTGCCGCCACTCAATGCCAACGATATGATCC
TTCGTCTCGGCTTGGAAGAAGGCATCTGGCACCGAAGAGTTACGACCTAT
GGTCTCTCGGCCTATGGAGTGTATGCATGGCTCGTGGCACCTGTTTCTTA
TGGCCACCTCGAATTGGGCATCGCAGCAAGACTGGAAGATTCCCAGGGAC
GCTTCATTGCTGAGCAGAGTTTCGACAGTCGTGAGAAAGTGATCGAGTGG
TTTCACGTTGGTGATCCGCTCGGGAAACGTCTGCCGATGGCCTATGGCCA
GATCTCTCCGGGCTTGCGCCAGTTGGTA
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