mRNA_M-pyrifera_M_contig12582.5228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12582.5228.1
Unique NamemRNA_M-pyrifera_M_contig12582.5228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12582.5228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12582contigM-pyrifera_M_contig12582:3497..4099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.2793636-CDS-M-pyrifera_M_contig12582:3496..38651622815774.2793636-CDS-M-pyrifera_M_contig12582:3496..3865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 3497..3865 +
1692277563.1962316-CDS-M-pyrifera_M_contig12582:3496..38651692277563.1962316-CDS-M-pyrifera_M_contig12582:3496..3865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 3497..3865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.2924259-UTR-M-pyrifera_M_contig12582:3865..40991622815774.2924259-UTR-M-pyrifera_M_contig12582:3865..4099Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 3866..4099 +
1692277563.2050498-UTR-M-pyrifera_M_contig12582:3865..40991692277563.2050498-UTR-M-pyrifera_M_contig12582:3865..4099Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 3866..4099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12582.5228.1prot_M-pyrifera_M_contig12582.5228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12582 3497..3865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12582.5228.1

>prot_M-pyrifera_M_contig12582.5228.1 ID=prot_M-pyrifera_M_contig12582.5228.1|Name=mRNA_M-pyrifera_M_contig12582.5228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
HTLYYKCGVRLSFPPVCFTTSAGGKQKRTKKEKKKCLVLGLLWVWPFSES
YVRLLPPPRRTYRQTGGRPLAHTRRQQENDAKPPRPPTSTANTYTCALPV
LAVAVLQPPPARLQVLPWWILN*
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mRNA from alignment at M-pyrifera_M_contig12582:3497..4099+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12582.5228.1 ID=mRNA_M-pyrifera_M_contig12582.5228.1|Name=mRNA_M-pyrifera_M_contig12582.5228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=603bp|location=Sequence derived from alignment at M-pyrifera_M_contig12582:3497..4099+ (Macrocystis pyrifera P11B4 male)
CACACATTATATTATAAGTGCGGTGTGAGACTAAGCTTTCCCCCAGTATG
TTTTACCACATCCGCCGGAGGGAAACAAAAAAGAACAAAAAAAGAAAAAA
AAAAGTGTTTGGTTCTCGGCCTTTTGTGGGTCTGGCCTTTTTCAGAGTCG
TATGTGCGTTTGTTGCCCCCCCCACGACGCACATACAGACAGACAGGCGG
ACGACCACTCGCCCACACCAGACGACAGCAAGAAAACGACGCCAAGCCCC
CTAGGCCCCCCACGAGCACAGCAAATACATACACCTGCGCCCTACCGGTG
CTAGCAGTAGCAGTCCTTCAACCGCCACCCGCCCGCTTGCAAGTACTACC
CTGGTGGATACTGAATTGAACCCTTTGACACTTGAAGGAAGGCATGCTTC
CAAGGGGGGAAACGTAATAAAAACACCATGATCACAGCATCGGCCACTCC
AAGATTCCCTGGCTGCTGCTGGGGCAGGGTGTGTGTCCGTGTCCGTGTCC
GAACAAGATTGTGCTGTCAGAAAAAAAGCCGCTTAAACCCTCAGTTGTGA
GATCGAGGATTTGGTCGAAAGCCATCTTTGCGACAGTCGATCGTGCTGCT
GCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12582:3497..4099+

>mRNA_M-pyrifera_M_contig12582.5228.1 ID=mRNA_M-pyrifera_M_contig12582.5228.1|Name=mRNA_M-pyrifera_M_contig12582.5228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig12582:3497..4099+ (Macrocystis pyrifera P11B4 male)
CACACATTATATTATAAGTGCGGTGTGAGACTAAGCTTTCCCCCAGTATG
TTTTACCACATCCGCCGGAGGGAAACAAAAAAGAACAAAAAAAGAAAAAA
AAAAGTGTTTGGTTCTCGGCCTTTTGTGGGTCTGGCCTTTTTCAGAGTCG
TATGTGCGTTTGTTGCCCCCCCCACGACGCACATACAGACAGACAGGCGG
ACGACCACTCGCCCACACCAGACGACAGCAAGAAAACGACGCCAAGCCCC
CTAGGCCCCCCACGAGCACAGCAAATACATACACCTGCGCCCTACCGGTG
CTAGCAGTAGCAGTCCTTCAACCGCCACCCGCCCGCTTGCAAGTACTACC
CTGGTGGATACTGAATTGACACACATTATATTATAAGTGCGGTGTGAGAC
TAAGCTTTCCCCCAGTATGTTTTACCACATCCGCCGGAGGGAAACAAAAA
AGAACAAAAAAAGAAAAAAAAAAGTGTTTGGTTCTCGGCCTTTTGTGGGT
CTGGCCTTTTTCAGAGTCGTATGTGCGTTTGTTGCCCCCCCCACGACGCA
CATACAGACAGACAGGCGGACGACCACTCGCCCACACCAGACGACAGCAA
GAAAACGACGCCAAGCCCCCTAGGCCCCCCACGAGCACAGCAAATACATA
CACCTGCGCCCTACCGGTGCTAGCAGTAGCAGTCCTTCAACCGCCACCCG
CCCGCTTGCAAGTACTACCCTGGTGGATACTGAATTGA
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