mRNA_M-pyrifera_M_contig125783.5214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125783.5214.1
Unique NamemRNA_M-pyrifera_M_contig125783.5214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A7K1ZBZ7_9ACTN (DUF222 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZBZ7_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 4.810e-49
Identity = 99/180 (55.00%), Postives = 112/180 (62.22%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQAL------------------------ARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            RE HAS T   + R+D WLDPIG E FR AL RIE E F  D + A+  H    T + LWRTPAQRRADALVEMA RA+      K P PLVIIH+D  TFE+ L                        A RLCET  G VI+PTQ +EQAL GH+RRLVYE+PGV+LDYGRS RLFTGA
Sbjct:  187 REFHASMTFDGMGRLDGWLDPIGFEEFRNALERIEAELFNNDLKDAQADHIDRHTAE-LWRTPAQRRADALVEMARRATAVPEGAKTPEPLVIIHMDKPTFEEGLNGTLGLNLFNHEPAQADRGPLSAEAGRLCETDSGAVITPTQAVEQALRGHIRRLVYESPGVILDYGRSTRLFTGA 365          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A7X5WUQ2_9ACTN (DUF222 domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WUQ2_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 8.770e-45
Identity = 84/140 (60.00%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALAR--------------RLCETADGTVISPTQMIEQ 378
            RE H SKT+  + RVD WLDPIG   F  ALRRIE E F+ADW+ AK+ HG+AVTVDRLWRTP QRRADALVEMA RA      GKRP PLVI+H D  T E AL R              R CE  DGTV+SPTQM+EQ
Sbjct:  173 RELHVSKTIGGMGRVDGWLDPIGHATFSEALRRIERELFDADWEQAKKEHGAAVTVDRLWRTPPQRRADALVEMAERAVAAPPDGKRPLPLVIVHTDPATMETALRRLAGGEHVEVDPTAERTCELDDGTVVSPTQMLEQ 312          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A2N5JVI2_9ACTN (HNHc domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JVI2_9ACTN)

HSP 1 Score: 115 bits (289), Expect = 6.170e-28
Identity = 65/156 (41.67%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            R+ H S++   +   D  LDPI G      LRRIE E FE DW  A++  G    V  L RTPAQRRADA+VEMA R+ T    G+RP PL  + V  +T    LA R+CE A+GTV++P  +++      + R+V++ P  ++D G ++R+F GA
Sbjct:  172 RKMHLSQSFGGMWFGDLVLDPISGAVVDNELRRIERELFEVDWAEARERLGDRAGVGDLARTPAQRRADAVVEMARRSGTAPADGRRPEPLFSVFVGFET----LAGRICELANGTVVNPGSLVDWLDEAWIERIVFDGPSRVIDVGVARRIFAGA 323          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A6N7FPW2_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FPW2_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 3.230e-27
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTG 465
            R+ H S++L  +   D  LDP+GG A    L  IE E F ADW  AK   G +VTV  L RTP QRRADALVEMA RA      G+RPAPL  +HV  +TF    A R+CE A+G V++P  ++       + R+V+  P  ++D G   R F G
Sbjct:  469 RQMHLSQSLDGMWLGDLVLDPLGGAAVAETLALIEEELFAADWAEAKTRVGDSVTVADLGRTPPQRRADALVEMAVRARAAPPGGRRPAPLFTVHVGYETF----AGRVCELANGAVVAPGALVPWLDGADIERVVFAGPSRVIDVGAHTRFFVG 619          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A5Q2RHD9_9ACTN (DUF222 domain-containing protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RHD9_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 1.260e-26
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTG 465
            R AH S  L  +  +D   DP+G   F  ALRRIEHE +EADW  A+   G+A +   L R+ A RR DAL+EMA RAS      + P PLV +HVD +T    L  R+CE + G V++P +++       V R V+   G ++D GR  RLF G
Sbjct:  177 RSAHLSPGLDGVGHLDVTFDPVGYTEFAEALRRIEHELWEADWADARDRLGNAASSADLARSTAPRRYDALIEMARRASAAPPGARAPRPLVTVHVDHET----LTGRICELSTGRVVTPGEVLPLLAAADVERAVFGPEGRVIDLGRRSRLFVG 327          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A538JUW2_9ACTN (DUF222 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JUW2_9ACTN)

HSP 1 Score: 108 bits (270), Expect = 3.280e-25
Identity = 65/156 (41.67%), Postives = 86/156 (55.13%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            R  H S+       +D   DP+GG     AL RIE + F+ADW  A+   G  V    L RTPAQRRADA+VEMA RA       + P PLV + V  +TF    A R+CE A+GTV+SP  ++       V R+V++ P  + + G  +RLFTGA
Sbjct:  169 RRLHLSQGFGGTWVLDGVFDPVGGAVPEGALGRIEADLFQADWAEARARAGEGVCAADLARTPAQRRADAMVEMARRAGATPPGARLPEPLVTVLVGYETF----AGRICELANGTVLSPGSLLRLLERAWVERVVFDGPDRIKNIGVRRRLFTGA 320          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A538JRI1_9ACTN (DUF222 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JRI1_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 6.360e-25
Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 1
Query:    1 REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            R  H S++      +D   DPIGG      L  IEHE FEADW  A+   G+ V    L R PAQRRADA VEMA RA       + P PL  + V  +TF    A R+CE A+GTV++P  ++     G V R+V++ P  + + G  +R+FTGA
Sbjct:  169 RRLHLSQSFGGGWVLDGTFDPIGGAVLHRTLAGIEHELFEADWAEARARVGAGVCAADLVRAPAQRRADAAVEMARRARAVPPGARLPEPLFTVFVGYETF----AGRICELAEGTVVTPGSLVGWLEDGWVERVVFDGPDRVRNLGSRRRIFTGA 320          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A7V9J6I2_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9J6I2_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 1.280e-24
Identity = 58/127 (45.67%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   88 ALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            AL RI  E FEADW  A+   G   T   L R+PAQRRADALVEMA RA +    G+RP PL  + V  +TF    A R+C+ A+G+V+SP  ++       V R+V+E+P  ++D G ++RLF+GA
Sbjct:    4 ALERIVDELFEADWAEARARLGEEATTADLARSPAQRRADALVEMARRAGSAPADGRRPEPLFTVLVGYETF----AGRICQLANGSVVSPGSLVPWLDSAWVERVVFESPSRVIDVGVARRLFSGA 126          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A349B5C4_9ACTN (DUF222 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B5C4_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 2.390e-23
Identity = 65/159 (40.88%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   40 RVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALAR----------------RLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            R++A    + G        R E     ADW  A++ HG    V+ L RTPAQRRADA+  +  RA+  A  G  P PLV I VD +TFE  L R                R C T DGT I P + +  AL+GHVRR+V ++ G ++D GR QRLFTG+
Sbjct:  198 RLEANHGGLQGAVMAEIFERFETAELYADWAAAREVHGEDARVEHLDRTPAQRRADAMFRIFCRAA--AADGCSPEPLVNIVVDLETFEDELRRSAGVDVRVDPNEVLDDRRCHTLDGTQIRPAEAVAAALVGHVRRVVVDSAGTVIDLGRRQRLFTGS 354          
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Match: A0A6I2WSC9_9ACTN (DUF222 domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A6I2WSC9_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 4.560e-20
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   10 HASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTHGSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDTFEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQRLFTGA 468
            +AS +L  +  ++  LDPIGG     ALRRIEHE + AD +   +            RTPAQRRA ALVEMAHR+      G+ P PL  + V   T +Q     LCE A+GTVI P++++E      +  ++++ P  +L   R +R FTGA
Sbjct:  179 YASSSLDGMVVLNGQLDPIGGAIVTEALRRIEHELYLADLKSGTR------------RTPAQRRAQALVEMAHRSQAAPPNGRMPKPLFTVVVGDHTAQQ-----LCELANGTVIRPSELVEYFSAAMLETVLFDGPSTVLSVSR-RRSFTGA 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125783.5214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1ZBZ7_9ACTN4.810e-4955.00DUF222 domain-containing protein n=2 Tax=Acidimicr... [more]
A0A7X5WUQ2_9ACTN8.770e-4560.00DUF222 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2N5JVI2_9ACTN6.170e-2841.67HNHc domain-containing protein n=1 Tax=Actinomycet... [more]
A0A6N7FPW2_9ACTN3.230e-2743.87DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A5Q2RHD9_9ACTN1.260e-2641.94DUF222 domain-containing protein n=1 Tax=Actinomar... [more]
A0A538JUW2_9ACTN3.280e-2541.67DUF222 domain-containing protein n=1 Tax=Actinomyc... [more]
A0A538JRI1_9ACTN6.360e-2541.03DUF222 domain-containing protein n=1 Tax=Actinomyc... [more]
A0A7V9J6I2_9ACTN1.280e-2445.67DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A349B5C4_9ACTN2.390e-2340.88DUF222 domain-containing protein n=2 Tax=Acidimicr... [more]
A0A6I2WSC9_9ACTN4.560e-2039.22DUF222 domain-containing protein n=4 Tax=root TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125783contigM-pyrifera_M_contig125783:6..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog1229780.BN381_310058
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsCOG1403@1,COG1403@2
COG Functional cat.V
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.4920146-CDS-M-pyrifera_M_contig125783:5..1521622815773.4920146-CDS-M-pyrifera_M_contig125783:5..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125783 6..152 -
1692277562.7401297-CDS-M-pyrifera_M_contig125783:5..1521692277562.7401297-CDS-M-pyrifera_M_contig125783:5..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125783 6..152 -
1622815773.5074315-CDS-M-pyrifera_M_contig125783:191..5121622815773.5074315-CDS-M-pyrifera_M_contig125783:191..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125783 192..512 -
1692277562.7515147-CDS-M-pyrifera_M_contig125783:191..5121692277562.7515147-CDS-M-pyrifera_M_contig125783:191..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125783 192..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125783.5214.1prot_M-pyrifera_M_contig125783.5214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125783 6..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125783.5214.1

>prot_M-pyrifera_M_contig125783.5214.1 ID=prot_M-pyrifera_M_contig125783.5214.1|Name=mRNA_M-pyrifera_M_contig125783.5214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
REAHASKTLFDLTRVDAWLDPIGGEAFRVALRRIEHEFFEADWQLAKQTH
GSAVTVDRLWRTPAQRRADALVEMAHRASTNARTGKRPAPLVIIHVDTDT
FEQALARRLCETADGTVISPTQMIEQALLGHVRRLVYEAPGVLLDYGRSQ
RLFTGA
back to top

mRNA from alignment at M-pyrifera_M_contig125783:6..512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125783.5214.1 ID=mRNA_M-pyrifera_M_contig125783.5214.1|Name=mRNA_M-pyrifera_M_contig125783.5214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig125783:6..512- (Macrocystis pyrifera P11B4 male)
CGCGAAGCCCACGCGTCGAAGACCCTGTTCGATCTCACCCGCGTCGATGC CTGGCTCGACCCGATCGGGGGCGAGGCCTTTCGCGTGGCGCTCCGGCGCA TCGAGCATGAGTTCTTCGAGGCCGACTGGCAGCTCGCGAAGCAGACCCAC GGGTCAGCGGTCACCGTCGACCGCCTGTGGCGCACACCGGCGCAGCGGCG GGCGGACGCCCTGGTCGAGATGGCCCACCGAGCTTCCACCAATGCCCGCA CCGGGAAGCGTCCCGCCCCTCTGGTGATCATCCATGTCGACACCGACACC TTCGAGCAGGCGCTCGCCCGCGTGATCGGAACCGACGCACCCACCCCGCT CGGCACCGAGCGTCTCTGCGAGACCGCCGACGGCACGGTCATCTCACCAA CCCAGATGATCGAGCAGGCGCTGCTCGGCCATGTTCGGCGCCTCGTCTAC GAGGCGCCCGGTGTGCTTCTCGACTACGGACGCTCGCAACGGCTGTTCAC CGGGGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125783:6..512-

>mRNA_M-pyrifera_M_contig125783.5214.1 ID=mRNA_M-pyrifera_M_contig125783.5214.1|Name=mRNA_M-pyrifera_M_contig125783.5214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig125783:6..512- (Macrocystis pyrifera P11B4 male)
CGCGAAGCCCACGCGTCGAAGACCCTGTTCGATCTCACCCGCGTCGATGC
CTGGCTCGACCCGATCGGGGGCGAGGCCTTTCGCGTGGCGCTCCGGCGCA
TCGAGCATGAGTTCTTCGAGGCCGACTGGCAGCTCGCGAAGCAGACCCAC
GGGTCAGCGGTCACCGTCGACCGCCTGTGGCGCACACCGGCGCAGCGGCG
GGCGGACGCCCTGGTCGAGATGGCCCACCGAGCTTCCACCAATGCCCGCA
CCGGGAAGCGTCCCGCCCCTCTGGTGATCATCCATGTCGACACCGACACC
TTCGAGCAGGCGCTCGCCCGCCGCGAAGCCCACGCGTCGAAGACCCTGTT
CGATCTCACCCGCGTCGATGCCTGGCTCGACCCGATCGGGGGCGAGGCCT
TTCGCGTGGCGCTCCGGCGCATCGAGCATGAGTTCTTCGAGGCCGACTGG
CAGCTCGCGAAGCAGACCCACGGGTCAGCGGTCACCGTCGACCGCCTGTG
GCGCACACCGGCGCAGCGGCGGGCGGACGCCCTGGTCGAGATGGCCCACC
GAGCTTCCACCAATGCCCGCACCGGGAAGCGTCCCGCCCCTCTGGTGATC
ATCCATGTCGACACCGACACCTTCGAGCAGGCGCTCGCCCGCCGTCTCTG
CGAGACCGCCGACGGCACGGTCATCTCACCAACCCAGATGATCGAGCAGG
CGCTGCTCGGCCATGTTCGGCGCCTCGTCTACGAGGCGCCCGGTGTGCTT
CTCGACTACGGACGCTCGCAACGGCTGTTCACCGGGGCCCGTCTCTGCGA
GACCGCCGACGGCACGGTCATCTCACCAACCCAGATGATCGAGCAGGCGC
TGCTCGGCCATGTTCGGCGCCTCGTCTACGAGGCGCCCGGTGTGCTTCTC
GACTACGGACGCTCGCAACGGCTGTTCACCGGGGCC
back to top