prot_M-pyrifera_M_contig125776.5212.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig125776.5212.1
Unique Nameprot_M-pyrifera_M_contig125776.5212.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length93
Homology
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2E9FX61_9RHOB (RNA polymerase sigma factor SigS n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FX61_9RHOB)

HSP 1 Score: 117 bits (293), Expect = 2.270e-31
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 0
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESAHF 93
            ++++  +  FD +F  LCAF Y+YL +  A +D VQ  F+S W+   NF+NE AIK FLYTSVRNKCLN+LKH +V+QKHE+NLIYELES  F
Sbjct:   12 LDKKAFKLIFDKFFNALCAFAYKYLNEVSAAEDLVQEAFVSFWEKGENFENESAIKAFLYTSVRNKCLNYLKHQTVKQKHEQNLIYELESDQF 104          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2E8N4R6_9RICK (HTH luxR-type domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8N4R6_9RICK)

HSP 1 Score: 100 bits (248), Expect = 1.310e-24
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESA 91
            ++++ +  FD  ++ LCA+  RYL D + V+D VQ  FI+LW  RG+FD+  AIK+FLYTSVRNKCLN LKH +V ++HE  LIYELE++
Sbjct:   11 DKRSFQLIFDEMYQRLCAYSSRYLYDDQEVEDLVQDSFITLWSKRGDFDHINAIKSFLYTSVRNKCLNVLKHQTVIKEHESRLIYELENS 100          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2N5Z7Z4_9BACT (RNA polymerase sigma factor SigS n=1 Tax=Salinivirgaceae bacterium TaxID=2053305 RepID=A0A2N5Z7Z4_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.150e-20
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 0
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELE 89
            I+++T +  +  Y+  +CAF Y+YL D++ V+D VQ  F+S W+    FD+  A+K++LYT+VRNKCLN LKH  V+ K+E  +I  LE
Sbjct:   12 ISRKTFQQLYHMYYNAMCAFSYKYLKDTQMVEDLVQEAFVSFWEKNSGFDHLNAVKSYLYTAVRNKCLNLLKHNEVKIKNEHEIIRVLE 100          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A419WWN5_9BACT (RNA polymerase sigma-70 factor (ECF subfamily) n=1 Tax=Marinifilum flexuosum TaxID=1117708 RepID=A0A419WWN5_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 9.310e-20
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 84
            N+   +  F+ Y+RPLC F  +++ D+E   D VQ  F++LW+ R   ++ KAIK++LY+SVRN CLN+L+H SV+QK EE +
Sbjct:   14 NRVVFKKIFEEYYRPLCGFSRKFIADAEICDDLVQESFLALWNKRSELESYKAIKSYLYSSVRNACLNYLRHESVKQKSEEEI 96          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2A4Z4J8_9FLAO (Sigma70_r2 domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A4Z4J8_9FLAO)

HSP 1 Score: 81.6 bits (200), Expect = 2.010e-18
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNK 66
            I++   +  FD++F+ LCAFGYRY+ D+   +D +Q VFISLW+ R NF++EKAIK FLYTS  NK
Sbjct:   12 IDKNVFKRIFDHHFKVLCAFGYRYVQDTSVSEDMIQEVFISLWEKRQNFNHEKAIKAFLYTSEANK 77          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2A4NDM8_9BACT (RNA polymerase subunit sigma-24 n=2 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A2A4NDM8_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.170e-18
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 84
            N+   ++ F+ Y+RPLC F  +++ DS+   D VQ  F+ LW+ R    +  AIK++LY+SVRN  LNHL+H+ VR K+EE +
Sbjct:   16 NRMVFKSIFEDYYRPLCGFSRKFIDDSDVCDDIVQESFLGLWNKRSEISSYNAIKSYLYSSVRNASLNHLRHMDVRNKNEEEI 98          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A416W4B1_9BACT (RNA polymerase sigma-70 factor n=1 Tax=Odoribacter sp. AF15-53 TaxID=2292236 RepID=A0A416W4B1_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.220e-18
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLI 85
            N    +  FD Y+ P+ ++ +RY+ D E ++D VQ  F+ +W+ R +F    AIK+FLYTSVRN CL+HL+H  VR++HE  L+
Sbjct:   16 NSMIFKEIFDRYYLPVKSYAFRYVEDDEVIEDFVQDAFLQVWERREHFFFVAAIKSFLYTSVRNACLDHLRHQKVRRQHEPELV 99          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: UPI0006D12213 (RNA polymerase sigma-70 factor n=1 Tax=Marinifilum fragile TaxID=570161 RepID=UPI0006D12213)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-17
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 84
            N+   +  F+ Y+RPLC F   ++ D+E   D VQ  F+ LW+ R + ++  AIK++LY+SVRN CLN+L+H  V+QK +E++
Sbjct:   14 NRVVFKKIFEEYYRPLCGFSRNFIPDAEVCDDLVQESFLGLWNKRSDIESYTAIKSYLYSSVRNACLNYLRHQDVKQKSQEDI 96          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A413IIM4_9BACT (RNA polymerase sigma-70 factor n=5 Tax=Butyricimonas TaxID=574697 RepID=A0A413IIM4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 2.520e-17
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYE 87
             +   +  ++ Y   L  FG ++L D   ++D +Q  F+SLW+NR  F+NE AIK+FLYT V+N+CLN+L+H  ++QK+ E  + E
Sbjct:   16 KESAFKEIYEKYVSTLRYFGNKFLSDERLIEDILQDTFVSLWENRKKFNNELAIKSFLYTGVKNRCLNNLRHEKIKQKYVEGFVEE 101          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: UPI00164C1959 (RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides sp. BX2 TaxID=2763058 RepID=UPI00164C1959)

HSP 1 Score: 79.7 bits (195), Expect = 1.590e-16
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    2 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEE 82
            ++   RT FD +++PLC +  RY+ + EA++D VQ+VF+ LW+NR +   E +++ +L  SV+N+CLN+LKH   +Q + E
Sbjct:   22 DKNAYRTLFDLFYQPLCVYARRYVDEHEAIEDFVQNVFVMLWENRKDLKIESSVRNYLLVSVKNQCLNYLKHEGYKQSYIE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9FX61_9RHOB2.270e-3156.99RNA polymerase sigma factor SigS n=1 Tax=Thalassob... [more]
A0A2E8N4R6_9RICK1.310e-2453.33HTH luxR-type domain-containing protein n=3 Tax=Ba... [more]
A0A2N5Z7Z4_9BACT1.150e-2044.94RNA polymerase sigma factor SigS n=1 Tax=Salinivir... [more]
A0A419WWN5_9BACT9.310e-2045.78RNA polymerase sigma-70 factor (ECF subfamily) n=1... [more]
A0A2A4Z4J8_9FLAO2.010e-1854.55Sigma70_r2 domain-containing protein n=1 Tax=Flavo... [more]
A0A2A4NDM8_9BACT2.170e-1843.37RNA polymerase subunit sigma-24 n=2 Tax=Bacteroida... [more]
A0A416W4B1_9BACT2.220e-1844.05RNA polymerase sigma-70 factor n=1 Tax=Odoribacter... [more]
UPI0006D122131.160e-1742.17RNA polymerase sigma-70 factor n=1 Tax=Marinifilum... [more]
A0A413IIM4_9BACT2.520e-1740.70RNA polymerase sigma-70 factor n=5 Tax=Butyricimon... [more]
UPI00164C19591.590e-1640.74RNA polymerase sigma-70 factor n=1 Tax=Parabactero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1740.10coord: 2..92
e-value: 1.3E-15
score: 59.2
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 11..73
e-value: 1.7E-13
score: 50.2
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 6..81
e-value: 4.1E-13
score: 47.3
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 2..89
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 3..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125776contigM-pyrifera_M_contig125776:234..512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125776.5212.1mRNA_M-pyrifera_M_contig125776.5212.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig125776 234..512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig125776.5212.1 ID=prot_M-pyrifera_M_contig125776.5212.1|Name=mRNA_M-pyrifera_M_contig125776.5212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFD
NEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESAHF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR039425RNA_pol_sigma-70
IPR013325RNA_pol_sigma_r2