mRNA_M-pyrifera_M_contig125753.5204.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125753.5204.1
Unique NamemRNA_M-pyrifera_M_contig125753.5204.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S4M9B2_9EUKA (Arginine--tRNA ligase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M9B2_9EUKA)

HSP 1 Score: 137 bits (345), Expect = 6.490e-35
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
            P +  +RD +  D ++  KG CAR +K D V Y+  L  AL A +   E P   LRD +A NG++N+F+NR ++F      V  LG +YG S++  GQ++IIEHTS+NPNGPLHIGNLRN ++GAHL+KL  AVGYEV+QH
Sbjct:   40 PPIAKTRDSSNGDFTVILKGACAR-RKIDVVKYSNELTEALNAFL--KENPKSYLRDSNAMNGYVNLFVNRSSIFEDTIKTVLGLGEKYGSSDKMAGQKVIIEHTSSNPNGPLHIGNLRNVMLGAHLSKLFEAVGYEVKQH 177          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S0R1X4_9CHLO (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R1X4_9CHLO)

HSP 1 Score: 124 bits (311), Expect = 1.890e-32
Identity = 65/141 (46.10%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
            P +  SRDL KADL+M +  +CA+ +K +   +T  LA  +   ++A  A   L+  V+    +LNVFLNR   F     AV +LG+++GH ++  G++++IEHTSANPN PLHIGNLRN ++GAHLA ++ AVGY+V+QH
Sbjct:   39 PNIQRSRDLEKADLTMLWAPVCAK-RKMNPAKFTAELADFINEKLSA-NADGLLVSKVAGVGPYLNVFLNRGETFRLTVRAVLKLGAKFGHVDQNAGKKVVIEHTSANPNAPLHIGNLRNVMIGAHLANIMKAVGYDVKQH 177          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S0SHG2_9CHLO (Arginine--tRNA ligase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHG2_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 1.810e-29
Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            P +  SRDLAKAD ++Q+    A+ +K + VAY   LA  L+A I    +P  L+  VS    +LN+F++R  VF  A  AV   G+ +GH+    G+R+IIEHTS+NPN PLHIGNLRN ++GAHLAK+ AA G+ V+Q
Sbjct:   39 PQVTRSRDLAKADFTVQWSAFAAK-RKLNPVAYVTELAAGLQARIDG-SSPRGLITRVSGVGPYLNLFVDRARVFRLALRAVAHAGNTFGHTNAAGGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKMQAACGFSVKQ 176          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S2T8X7_9CHLO (Arginine--tRNA ligase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8X7_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 1.190e-28
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    7 MILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIA---APEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
            M +SR L + D ++Q   LCARAK    V   +A+A AL+A +A   A EA  +L++ V+A   +LNV LNR  V+     AV   G+ YG ++  KG+R+I+EHTS+NPN PLHIGNLRN ++GAH A+L+ +VG EV+QH
Sbjct:   55 MEMSRRLDQGDFAVQLAPLCARAKTNP-VQGAKAIAEALQASLASLSATEAATRLVKGVAAAGPYLNVSLNRPLVYKRVVEAVASRGAEYGVTDLWKGKRVIVEHTSSNPNAPLHIGNLRNVMIGAHAARLIQSVGAEVKQH 195          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: K8EIQ7_9CHLO (Arginine--tRNA ligase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIQ7_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 5.180e-25
Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            P +  +RDL+KAD ++Q+   CA+ +K +   Y + L+  ++  I         ++ V     ++N+F+ RQ VF  A +A+   G++YG +   +G+++IIEHTS+NPN PLHIGNLRN ++GAHLA+++ A G EV Q
Sbjct:   25 PELSRTRDLSKADFTVQWSRFCAK-RKLNPAEYVKNLSETIQKQIEDGAHQDGFIKSVQGVGPYMNIFVKRQKVFKLAINAIIEQGTKYGCTNAGQGKKVIIEHTSSNPNAPLHIGNLRNVMIGAHLARVMQACGCEVTQ 163          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A5B8N0V1_9CHLO (Arginine--tRNA ligase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0V1_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 9.750e-25
Identity = 57/139 (41.01%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   16 SRDLAKADLSMQFKGLCARAKKKD---AVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
            SR L + D+++Q   +CAR K      A   +E + T L + ++A E   KL++ V+    +LN+FL+R  ++      V  +G+RYG +E  KG+R+++EHTS+NPN PLHIGNLRN ++GAH A+L+ + G +V+QH
Sbjct:   61 SRRLDQGDIAVQLAPVCARVKTNPVHGAKVISEFIMTHLNS-LSADERKGKLVQKVACAGPYLNIFLSRPMMYKRVVEQVLEMGARYGFTEAWKGKRVLVEHTSSNPNAPLHIGNLRNVMIGAHTARLIESAGADVKQH 198          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7R9WC40_9CHLO (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7R9WC40_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 1.260e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  175 SAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            +A   +LN+ LNR  VF  A  +V   G  +GH++  KG+R+IIEHTS+NPN PLHIGNLRN ++GAHLA+L+ A G++ ++
Sbjct:   98 AAAGVYLNMSLNRPKVFEMALRSVASQGETFGHTDAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLARLMKACGHDAKE 179          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: C1E9E9_MICCC (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9E9_MICCC)

HSP 1 Score: 96.3 bits (238), Expect = 1.480e-20
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  160 LLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            L+  V     +LN+F++R  VF     AV   G ++GH++   G+R+IIEHTS+NPN PLHIGNLRN ++GAHLAK+ AA G+ V+Q
Sbjct:    1 LITKVQGVGPYLNLFVDRARVFRLVIRAVSAQGDKFGHTKAAGGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKMQAACGFAVKQ 87          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A4S1B0_OSTLU (Arginine--tRNA ligase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S1B0_OSTLU)

HSP 1 Score: 96.3 bits (238), Expect = 1.950e-20
Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  190 FLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            ++N+ +NR  VF A   AV R G ++GH++  KG+R+IIEHTS+NPN PLHIGNLRN ++GAHL++++ A G++V++
Sbjct:   36 YVNLKMNRPMVFEATMKAVARRGGKFGHTDAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLSRMMKACGHDVKE 112          
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A1Y5IBF2_OSTTA (Arginine--tRNA ligase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IBF2_OSTTA)

HSP 1 Score: 95.1 bits (235), Expect = 5.030e-20
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  190 FLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
            + N+ LNR  VF A   +  + G+ +GH+   KG+R+IIEHTS+NPN PLHIGNLRN ++GAHLAKL+ A G+EV++
Sbjct:  107 YANMTLNRPMVFEAVMKSAAKQGATFGHTNAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKLMKACGHEVQE 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M9B2_9EUKA6.490e-3550.35Arginine--tRNA ligase n=1 Tax=Vannella sp. CB-2014... [more]
A0A7S0R1X4_9CHLO1.890e-3246.10Arginyl-tRNA synthetase (Fragment) n=1 Tax=Pyramim... [more]
A0A7S0SHG2_9CHLO1.810e-2947.86Arginine--tRNA ligase n=1 Tax=Mantoniella antarcti... [more]
A0A7S2T8X7_9CHLO1.190e-2847.89Arginine--tRNA ligase n=1 Tax=Chloropicon roscoffe... [more]
K8EIQ7_9CHLO5.180e-2539.29Arginine--tRNA ligase n=1 Tax=Bathycoccus prasinos... [more]
A0A5B8N0V1_9CHLO9.750e-2541.01Arginine--tRNA ligase n=1 Tax=Chloropicon primus T... [more]
A0A7R9WC40_9CHLO1.260e-2051.22Arginyl-tRNA synthetase (Fragment) n=1 Tax=Ostreoc... [more]
C1E9E9_MICCC1.480e-2050.57Arginyl-tRNA synthetase (Fragment) n=1 Tax=Micromo... [more]
A4S1B0_OSTLU1.950e-2051.95Arginine--tRNA ligase n=2 Tax=Ostreococcus sp. 'lu... [more]
A0A1Y5IBF2_OSTTA5.030e-2054.55Arginine--tRNA ligase n=2 Tax=Ostreococcus tauri T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125753contigM-pyrifera_M_contig125753:91..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue6.2e-22
Seed eggNOG ortholog41875.XP_007511765.1
Preferred nameRARS2
KEGG rclassRC00055,RC00523
KEGG koko:K01537,ko:K01887,ko:K02890
KEGG TC3.A.3.2
KEGG ReactionR03646
KEGG Pathwayko00970,ko03010,map00970,map03010
KEGG ModuleM00178,M00179,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000959,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031974,GO:0032543,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070127,GO:0070144,GO:0071704,GO:0090304,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.arginyl-tRNA aminoacylation
EggNOG OGsCOG0018@1,KOG1195@2759
EC3.6.3.8,6.1.1.19
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016,ko03029
Exons1
Model size423
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.0933366-UTR-M-pyrifera_M_contig125753:90..961622815773.0933366-UTR-M-pyrifera_M_contig125753:90..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125753 91..96 +
1692277562.5773118-UTR-M-pyrifera_M_contig125753:90..961692277562.5773118-UTR-M-pyrifera_M_contig125753:90..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125753 91..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.103548-CDS-M-pyrifera_M_contig125753:96..5131622815773.103548-CDS-M-pyrifera_M_contig125753:96..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125753 97..513 +
1692277562.5962124-CDS-M-pyrifera_M_contig125753:96..5131692277562.5962124-CDS-M-pyrifera_M_contig125753:96..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125753 97..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125753.5204.1prot_M-pyrifera_M_contig125753.5204.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125753 97..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125753.5204.1

>prot_M-pyrifera_M_contig125753.5204.1 ID=prot_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPC
KLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLII
EHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH
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mRNA from alignment at M-pyrifera_M_contig125753:91..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125753.5204.1 ID=mRNA_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig125753:91..513+ (Macrocystis pyrifera P11B4 male)
CCGGGCATGATCCTCTCGCGCGACCTCGCCAAGGCGGACCTCTCGATGCA GTTCAAGGGCCTGTGCGCGCGAGCCAAGAAGAAGGACGCCGTCGCCTACA CGGAGGCGCTGGCCACTGCCCTGCGCGCCCACATAGCGGCGCCAGAGGCG CCCTGCAAGCTCCTGCGTGACGTGAGCGCCGAGAACGGCTTCCTCAATGT GTTCCTCAACAGGCAGAACGTCTTCTCCGCGGCCTTCTCTGCGGTGGAGC GCCTCGGCTCGCGCTACGGCCACAGCGAGGAGAAGAAGGGCCAGCGCCTC ATCATCGAGCACACGTCGGCCAACCCCAACGGCCCGCTCCACATCGGAAA CCTCCGCAACTCCCTCGTGGGCGCTCACCTGGCCAAGCTCCTCGCCGCCG TCGGCTACGAGGTGCGCCAGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125753:91..513+

>mRNA_M-pyrifera_M_contig125753.5204.1 ID=mRNA_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig125753:91..513+ (Macrocystis pyrifera P11B4 male)
ATGATCCTCTCGCGCGACCTCGCCAAGGCGGACCTCTCGATGCAGTTCAA
GGGCCTGTGCGCGCGAGCCAAGAAGAAGGACGCCGTCGCCTACACGGAGG
CGCTGGCCACTGCCCTGCGCGCCCACATAGCGGCGCCAGAGGCGCCCTGC
AAGCTCCTGCGTGACGTGAGCGCCGAGAACGGCTTCCTCAATGTGTTCCT
CAACAGGCAGAACGTCTTCTCCGCGGCCTTCTCTGCGGTGGAGCGCCTCG
GCTCGCGCTACGGCCACAGCGAGGAGAAGAAGGGCCAGCGCCTCATCATC
GAGCACACGTCGGCCAACCCCAACGGCCCGCTCCACATCGGAAACCTCCG
CAACTCCCTCGTGGGCGCTCACCTGGCCAAGCTCCTCGCCGCCGTCGGCT
ACGAGGTGCGCCAGCACATGATCCTCTCGCGCGACCTCGCCAAGGCGGAC
CTCTCGATGCAGTTCAAGGGCCTGTGCGCGCGAGCCAAGAAGAAGGACGC
CGTCGCCTACACGGAGGCGCTGGCCACTGCCCTGCGCGCCCACATAGCGG
CGCCAGAGGCGCCCTGCAAGCTCCTGCGTGACGTGAGCGCCGAGAACGGC
TTCCTCAATGTGTTCCTCAACAGGCAGAACGTCTTCTCCGCGGCCTTCTC
TGCGGTGGAGCGCCTCGGCTCGCGCTACGGCCACAGCGAGGAGAAGAAGG
GCCAGCGCCTCATCATCGAGCACACGTCGGCCAACCCCAACGGCCCGCTC
CACATCGGAAACCTCCGCAACTCCCTCGTGGGCGCTCACCTGGCCAAGCT
CCTCGCCGCCGTCGGCTACGAGGTGCGCCAGCAC
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