mRNA_M-pyrifera_M_contig12567.5185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12567.5185.1
Unique NamemRNA_M-pyrifera_M_contig12567.5185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: D8LE79_ECTSI (Kynurenine/Oxoglutarate Transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE79_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.680e-33
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLRKMASEQ 204
            MPVMTHDWAFCRWLA+EHGLVAIPTSPFFS  SR KGLGNGLVRFCFCKTDET+EAA +VL KMA EQ
Sbjct:  507 MPVMTHDWAFCRWLAIEHGLVAIPTSPFFSEDSRKKGLGNGLVRFCFCKTDETIEAAAEVLMKMAEEQ 574
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: W7T383_9STRA (Aminotransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T383_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.220e-21
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAA---SRAKGLGNGLVRFCFCKTDETLEAADKVLRKMASEQ 204
            MP+MT DWAFCRWLA E+G++AIPTS F+ +    +  +G G  LVRF FCKTDETL+AA K LR++ + Q
Sbjct:    1 MPIMTRDWAFCRWLAYEYGVIAIPTSAFYGSPPGHTEEEG-GRSLVRFTFCKTDETLDAAAKALRRLGANQ 70
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A836CN57_9STRA (Aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN57_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.180e-17
Identity = 41/74 (55.41%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKG---------LGNGLVRFCFCKTDETLEAADKVLRKMA 195
            MP MT DWAFCRWLALEHG++AIPT+PFF                 L    VRFCFCKTDETL AA   L +M+
Sbjct:  372 MPRMTRDWAFCRWLALEHGVIAIPTAPFFRREEEGXXXXXXXXXNPLRGRFVRFCFCKTDETLAAAAAALAEMS 445
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S2B3V4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3V4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-17
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLRKMA 195
            +  +T DWAFCRWLALEHG++AIP +PFFS  SR+K +G+  VRF FCKTD TLE A + LRK+A
Sbjct:  459 IEAVTRDWAFCRWLALEHGVLAIPVAPFFSLESRSK-VGS-YVRFAFCKTDATLERAAERLRKLA 521
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S1DP74_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DP74_HEMAN)

HSP 1 Score: 84.3 bits (207), Expect = 1.680e-17
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLRKM 192
            MP MT DWA CRW ALEHG+VAIP SPF+S  +R   LG  LVRF FCKTD+TL+ A     K+
Sbjct:  406 MPSMTRDWALCRWFALEHGIVAIPCSPFYSPENRE--LGKDLVRFAFCKTDDTLQEAYDAFSKI 467
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S3ESM7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ESM7_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-16
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 PVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETL-EAADKV 180
            PVMT DWA CRWLA E G++AIP SPF+S  +  K LG   VRF FCK+DETL EAA K+
Sbjct:  108 PVMTRDWALCRWLAKEGGVIAIPASPFYSPGN--KHLGENYVRFAFCKSDETLREAAAKI 165
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S4KN52_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KN52_GUITH)

HSP 1 Score: 77.8 bits (190), Expect = 4.760e-16
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLR 186
            M  MT DWA CRWLA EHG+++IP SPF+S  +R   L +  VRF FCKTDETL+ A +  R
Sbjct:  144 MKTMTRDWALCRWLAKEHGIISIPCSPFYSPENRH--LASNFVRFAFCKTDETLQEALEAFR 203
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S2UU85_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU85_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.910e-15
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLRKM 192
            MP MT DWAFCR+LA E G+VAIP++PFFSA +R   +G+  VRF FCK +ETLE A + L+ +
Sbjct:  417 MPKMTRDWAFCRYLAKEEGVVAIPSAPFFSAKNRY--MGSNYVRFAFCKKEETLEQAIEKLKML 478
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: A0A7S3S8K1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S8K1_9SPIT)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-14
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 PVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLRK 189
            P MT DWA CR+LA+E G++AIP+SPFFS  +R   LG   VRF FCK+DETL  A + L++
Sbjct:  271 PKMTRDWALCRYLAMEAGVLAIPSSPFFSPQNR--DLGGNFVRFAFCKSDETLSLASEKLKE 330
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BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Match: L1I7C4_GUITC (Aminotran_1_2 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I7C4_GUITC)

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-14
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   10 MTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKTDETLEAADKVLR 186
            MT DWA CRWLA EHG+++IP SPF+S  +R   L +  VRF FCKTDETL+ A +  R
Sbjct:  401 MTRDWALCRWLAKEHGIISIPCSPFYSPENRH--LASNFVRFAFCKTDETLQEALEAFR 457
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12567.5185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE79_ECTSI1.680e-3386.76Kynurenine/Oxoglutarate Transaminase n=2 Tax=Ectoc... [more]
W7T383_9STRA2.220e-2157.75Aminotransferase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A836CN57_9STRA1.180e-1755.41Aminotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S2B3V4_9STRA1.340e-1763.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1DP74_HEMAN1.680e-1760.94Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S3ESM7_9EUKA1.590e-1663.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4KN52_GUITH4.760e-1656.45Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S2UU85_9STRA1.910e-1557.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3S8K1_9SPIT1.110e-1456.45Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
L1I7C4_GUITC1.700e-1457.63Aminotran_1_2 domain-containing protein n=2 Tax=Gu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12567contigM-pyrifera_M_contig12567:2428..2631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog2880.D8LE79
Preferred nameCCBL2
KEGG rclassRC00006,RC01210,RC01245
KEGG koko:K00816,ko:K09142,ko:K14264
KEGG ReactionR01956,R04171,R09366,R09373
KEGG Pathwayko00380,ko00450,ko01100,ko05204,map00380,map00450,map01100,map05204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006090,GO:0006103,GO:0006520,GO:0006558,GO:0006559,GO:0006568,GO:0006569,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016053,GO:0016054,GO:0016212,GO:0016740,GO:0016769,GO:0016829,GO:0016846,GO:0017144,GO:0019439,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0034641,GO:0036137,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0042737,GO:0042802,GO:0042803,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0047312,GO:0047315,GO:0047316,GO:0047804,GO:0047945,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0070013,GO:0070189,GO:0070546,GO:0070548,GO:0071704,GO:0097052,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902221,GO:1902222
EggNOG free text desc.transferase activity, transferring nitrogenous groups
EggNOG OGsCOG0436@1,KOG0257@2759
Ec32 ortholog descriptionKynurenine/Oxoglutarate Transaminase
Ec32 orthologEc-00_001230.1
EC2.6.1.64,2.6.1.7,4.4.1.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.2960937-CDS-M-pyrifera_M_contig12567:2427..26311622815772.2960937-CDS-M-pyrifera_M_contig12567:2427..2631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12567 2428..2631 +
1692277562.2609968-CDS-M-pyrifera_M_contig12567:2427..26311692277562.2609968-CDS-M-pyrifera_M_contig12567:2427..2631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12567 2428..2631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12567.5185.1prot_M-pyrifera_M_contig12567.5185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12567 2428..2631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12567.5185.1

>prot_M-pyrifera_M_contig12567.5185.1 ID=prot_M-pyrifera_M_contig12567.5185.1|Name=mRNA_M-pyrifera_M_contig12567.5185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MPVMTHDWAFCRWLALEHGLVAIPTSPFFSAASRAKGLGNGLVRFCFCKT
DETLEAADKVLRKMASEQ
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mRNA from alignment at M-pyrifera_M_contig12567:2428..2631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12567.5185.1 ID=mRNA_M-pyrifera_M_contig12567.5185.1|Name=mRNA_M-pyrifera_M_contig12567.5185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig12567:2428..2631+ (Macrocystis pyrifera P11B4 male)
ATGCCGGTCATGACCCACGACTGGGCGTTCTGCCGCTGGCTCGCCCTGGA
GCACGGGCTGGTCGCCATTCCCACCAGCCCGTTCTTCTCCGCCGCTTCTC
GGGCCAAGGGCCTCGGCAACGGCCTCGTGCGGTTCTGCTTCTGCAAGACG
GACGAGACGCTTGAAGCGGCGGACAAGGTCTTGAGGAAGATGGCCAGCGA
GCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12567:2428..2631+

>mRNA_M-pyrifera_M_contig12567.5185.1 ID=mRNA_M-pyrifera_M_contig12567.5185.1|Name=mRNA_M-pyrifera_M_contig12567.5185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig12567:2428..2631+ (Macrocystis pyrifera P11B4 male)
ATGCCGGTCATGACCCACGACTGGGCGTTCTGCCGCTGGCTCGCCCTGGA
GCACGGGCTGGTCGCCATTCCCACCAGCCCGTTCTTCTCCGCCGCTTCTC
GGGCCAAGGGCCTCGGCAACGGCCTCGTGCGGTTCTGCTTCTGCAAGACG
GACGAGACGCTTGAAGCGGCGGACAAGGTCTTGAGGAAGATGGCCAGCGA
GCAGATGCCGGTCATGACCCACGACTGGGCGTTCTGCCGCTGGCTCGCCC
TGGAGCACGGGCTGGTCGCCATTCCCACCAGCCCGTTCTTCTCCGCCGCT
TCTCGGGCCAAGGGCCTCGGCAACGGCCTCGTGCGGTTCTGCTTCTGCAA
GACGGACGAGACGCTTGAAGCGGCGGACAAGGTCTTGAGGAAGATGGCCA
GCGAGCAG
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