mRNA_M-pyrifera_M_contig12560.5181.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12560.5181.1
Unique NamemRNA_M-pyrifera_M_contig12560.5181.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-19
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    4 QSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQNQKAKD 135
            +SFRSKRLDDGETKCINVCA+K+IKLT RVALRFQDIQ QKAKD
Sbjct:   38 KSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKD 81
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-7
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQ 117
            +QSFRSK+L+D E  C+N+CA+KF+K T RV +RF + Q
Sbjct:   43 VQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQ 81
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: W4FPA0_9STRA (zf-Tim10_DDP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQ 117
            +QSFRSK+L+D E  C+N+CA+KF+K T RV +RF + Q
Sbjct:   43 VQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAEAQ 81
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A024G9K4_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9K4_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 1.070e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQD 111
            + SFRSK+LDD E+ C+N CA+KF++ T R ++R Q+
Sbjct:   38 VHSFRSKKLDDKESNCVNTCAEKFLRHTMRSSIRLQE 74
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: B7G5E1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E1_PHATC)

HSP 1 Score: 47.4 bits (111), Expect = 1.140e-5
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    7 SFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQNQKAK 132
            SFRSK LD  E  CI  CAD+++K+T RV LRF + Q  + K
Sbjct:   45 SFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQQK 86
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A388M117_CHABU (zf-Tim10_DDP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M117_CHABU)

HSP 1 Score: 47.0 bits (110), Expect = 1.550e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDI 114
            + SFR K LD  E  C+  C +KF+K TGRV+LRFQ+I
Sbjct:   45 VDSFRRKTLDKTEETCVKRCVEKFLKHTGRVSLRFQEI 82
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BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A8J5IXW2_9STRA (zf-Tim10_DDP domain-containing protein n=3 Tax=Oomycota TaxID=4762 RepID=A0A8J5IXW2_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 2.920e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQD 111
            + +FRSK+LDD ET C+N CA+KF++ T R ++R Q+
Sbjct:   38 VHAFRSKKLDDKETSCVNNCAEKFLRHTMRSSVRLQE 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: G4YG78_PHYSP (zf-Tim10_DDP domain-containing protein n=12 Tax=Peronosporaceae TaxID=4777 RepID=G4YG78_PHYSP)

HSP 1 Score: 46.2 bits (108), Expect = 2.980e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQD 111
            + +FRSK+LDD ET C+N CA+KF++ T R ++R Q+
Sbjct:   38 VHAFRSKKLDDKETSCVNNCAEKFLRHTMRSSVRLQE 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A6A3JLB6_9STRA (zf-Tim10_DDP domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3JLB6_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 4.700e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQD 111
            + +FRSK+LDD ET C+N CA+KF++ T R ++R Q+
Sbjct:   59 VHAFRSKKLDDKETSCVNNCAEKFLRHTMRSSVRLQE 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Match: A0A7S2CLT1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLT1_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 4.880e-5
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQ 117
            +++FRS  L D E+KC+N CA+KFIKL  R   R+Q+ Q
Sbjct:   63 IKTFRSSTLSDQESKCVNSCAEKFIKLGRRAGYRYQEHQ 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12560.5181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L457_9PHAE1.540e-1988.64zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A024TE29_9STRA3.200e-756.41zf-Tim10_DDP domain-containing protein n=4 Tax=Aph... [more]
W4FPA0_9STRA2.330e-656.41zf-Tim10_DDP domain-containing protein n=2 Tax=Aph... [more]
A0A024G9K4_9STRA1.070e-551.35zf-Tim10_DDP domain-containing protein n=1 Tax=Alb... [more]
B7G5E1_PHATC1.140e-552.38Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A388M117_CHABU1.550e-555.26zf-Tim10_DDP domain-containing protein n=1 Tax=Cha... [more]
A0A8J5IXW2_9STRA2.920e-551.35zf-Tim10_DDP domain-containing protein n=3 Tax=Oom... [more]
G4YG78_PHYSP2.980e-551.35zf-Tim10_DDP domain-containing protein n=12 Tax=Pe... [more]
A0A6A3JLB6_9STRA4.700e-551.35zf-Tim10_DDP domain-containing protein n=8 Tax=Per... [more]
A0A7S2CLT1_9STRA4.880e-551.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12560contigM-pyrifera_M_contig12560:2171..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7G6I8
Preferred nameTIMM9
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.chaperone-mediated protein transport
EggNOG OGsKOG3479@1,KOG3479@2759
Ec32 ortholog descriptionMitochondrial protein import TIM9.10 complex subunit, Tim9 homolog
Ec32 orthologEc-05_006340.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.0364676-CDS-M-pyrifera_M_contig12560:2170..23051622815772.0364676-CDS-M-pyrifera_M_contig12560:2170..2305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12560 2171..2305 +
1692277562.09953-CDS-M-pyrifera_M_contig12560:2170..23051692277562.09953-CDS-M-pyrifera_M_contig12560:2170..2305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12560 2171..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12560.5181.1prot_M-pyrifera_M_contig12560.5181.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12560 2171..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12560.5181.1

>prot_M-pyrifera_M_contig12560.5181.1 ID=prot_M-pyrifera_M_contig12560.5181.1|Name=mRNA_M-pyrifera_M_contig12560.5181.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
LQSFRSKRLDDGETKCINVCADKFIKLTGRVALRFQDIQNQKAKD
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mRNA from alignment at M-pyrifera_M_contig12560:2171..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12560.5181.1 ID=mRNA_M-pyrifera_M_contig12560.5181.1|Name=mRNA_M-pyrifera_M_contig12560.5181.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig12560:2171..2305+ (Macrocystis pyrifera P11B4 male)
TTACAGAGTTTCCGAAGCAAGCGGCTAGACGATGGGGAGACGAAGTGCAT
CAACGTCTGCGCCGACAAGTTCATTAAGCTTACCGGCCGAGTGGCGCTAA
GGTTCCAAGACATCCAGAACCAGAAGGCGAAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12560:2171..2305+

>mRNA_M-pyrifera_M_contig12560.5181.1 ID=mRNA_M-pyrifera_M_contig12560.5181.1|Name=mRNA_M-pyrifera_M_contig12560.5181.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig12560:2171..2305+ (Macrocystis pyrifera P11B4 male)
TTACAGAGTTTCCGAAGCAAGCGGCTAGACGATGGGGAGACGAAGTGCAT
CAACGTCTGCGCCGACAAGTTCATTAAGCTTACCGGCCGAGTGGCGCTAA
GGTTCCAAGACATCCAGAACCAGAAGGCGAAGGACTTACAGAGTTTCCGA
AGCAAGCGGCTAGACGATGGGGAGACGAAGTGCATCAACGTCTGCGCCGA
CAAGTTCATTAAGCTTACCGGCCGAGTGGCGCTAAGGTTCCAAGACATCC
AGAACCAGAAGGCGAAGGAC
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