mRNA_M-pyrifera_M_contig125589.5178.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125589.5178.1
Unique NamemRNA_M-pyrifera_M_contig125589.5178.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A5A8CW03_CAFRO (CAP-Gly domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW03_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 1.800e-11
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F +L +L++ +  +ASW +V ALA FP L  L++ G  V+  GE    R R EV+ARL  ++ LN SEVR REREDAEKAYV
Sbjct:  408 FASLTSLTLSDNPIASWDSVTALAAFPALTALRVSGAGVV--GELGSNRARLEVVARLASVRTLNGSEVRPREREDAEKAYV 487          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A7S1C881_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C881_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.630e-9
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVL-SAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F  L+ LS+ +  +ASW  VD L  FP L  L+ Q  PV  SAG      +R  VIARLP L+ LN SEVR RER DAEK Y+
Sbjct:  357 FRALKFLSLASNAIASWDVVDRLRHFPSLDSLRFQRNPVTESAGP---TEMRMVVIARLPALRTLNGSEVRPRERSDAEKTYL 436          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A7D9H8I8_9CUCU (Mulet (Fragment) n=1 Tax=Rhyzobius pseudopulcher TaxID=1661851 RepID=A0A7D9H8I8_9CUCU)

HSP 1 Score: 59.7 bits (143), Expect = 2.230e-8
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHS-EVRKREREDAEKAYV 279
            F  L+ L++ +  LA+W  ++ L+LFP L  +++QGCP+  + E      RQ +IARLP ++ LN   ++   EREDAE+A++
Sbjct:  215 FRKLKILNMNSTNLAAWEDIERLSLFPALNCVRIQGCPLWESNEYTEHERRQLLIARLPNVETLNGGGKIGHDEREDAERAFI 297          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A0M0K1Y2_9EUKA (Tubulin-specific chaperone e-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1Y2_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-8
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F  L  L +R  +L SW ++DAL  +P L   ++   P+ SA  G     R+ VIAR+ +LK LN SEVR REREDAE+ Y+
Sbjct:  259 FSTLRHLMLRGNKLDSWASIDALDAYPSLTEARLAELPLTSAISGAA--ARRFVIARMHKLKALNGSEVRPREREDAERFYL 338          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A812YNE0_9DINO (TFCE protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YNE0_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-7
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   13 TATPTLWFENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRV-RQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            T+TP   F  LE+LS+ +  +ASW  + AL  FP L+ ++++  P+L   E + P   RQ +IAR+ +L+ LN SEVR RER DAE  Y+
Sbjct:  141 TSTPP--FRALESLSLSHTDIASWQTIYALDKFPALRDVRLRHVPLL---ESLSPAAARQGIIARMRRLQQLNASEVRGRERSDAETLYL 225          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A7S2D9S3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D9S3_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-7
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F  LE L +R   + SW ++DAL  F RL  +++   P+ S   G     R+ +I RL +L+ LN SEVR REREDAE+ Y+
Sbjct:   48 FGALEHLMLRGNPIDSWASIDALDSFERLTEMRLAELPLTSEMSGAA--ARRVIIGRLGKLRALNGSEVRTREREDAERFYL 127          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A074ZL65_9TREM (Tubulin-specific chaperone E n=8 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZL65_9TREM)

HSP 1 Score: 53.1 bits (126), Expect = 4.710e-6
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   22 PTLWFENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            P++WF+ L  L++RN    +W  +  L    RL+ L    CPVL      +   RQE+IARLP +  +N  +V   ER  AE  Y+
Sbjct:  445 PSIWFQALTTLNMRNTAFTNWHPIKQLLRLHRLEQLTFSDCPVLE--NLTIETARQELIARLPHVSCINRIQVCPDERRGAELDYL 528          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A183RTA6_9TREM (Uncharacterized protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RTA6_9TREM)

HSP 1 Score: 52.8 bits (125), Expect = 6.340e-6
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F NL  L ++N    +W  V+ L    +L  L + GCPV      +    RQEVIARLP LK L+  E+   ER  +E  Y+
Sbjct:  394 FRNLNTLGLKNNLFTNWNFVNQLLNLSKLDHLMVSGCPVFENSVNIAT-ARQEVIARLPNLKMLDRVEITPEERRGSELDYL 474          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A095AW96_SCHHA (Tubulin-specific chaperone E n=6 Tax=Schistosoma TaxID=6181 RepID=A0A095AW96_SCHHA)

HSP 1 Score: 52.8 bits (125), Expect = 6.450e-6
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F NL  L ++N    +W  V+ L    +L  L + GCPV      +    RQEVIARLP LK L+  E+   ER  +E  Y+
Sbjct:  470 FRNLNTLGLKNNLFTNWNFVNQLLHLSKLDHLMVSGCPVFENSVSI-ETARQEVIARLPNLKMLDRVEITPEERRGSELDYL 550          
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Match: A0A7S3AJB9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJB9_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 7.300e-6
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   34 FENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPVLSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV 279
            F  L  + +R   ++ W  +DAL  F  L   ++   P+ S   G +   R+ VIAR+ +LK LN SEVR REREDAE+ Y+
Sbjct:   15 FATLRHIMLRGNPISGWETIDALDSFGELVEARIAELPLTSTISGAV--ARRLVIARIGKLKILNGSEVRVREREDAERFYL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125589.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A5A8CW03_CAFRO1.800e-1151.22CAP-Gly domain-containing protein n=4 Tax=Cafeteri... [more]
A0A7S1C881_9STRA2.630e-950.60Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7D9H8I8_9CUCU2.230e-838.55Mulet (Fragment) n=1 Tax=Rhyzobius pseudopulcher T... [more]
A0A0M0K1Y2_9EUKA2.300e-845.12Tubulin-specific chaperone e-like protein n=1 Tax=... [more]
A0A812YNE0_9DINO1.420e-743.33TFCE protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S2D9S3_9EUKA1.520e-742.68Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A074ZL65_9TREM4.710e-636.05Tubulin-specific chaperone E n=8 Tax=Opisthorchiid... [more]
A0A183RTA6_9TREM6.340e-637.80Uncharacterized protein n=1 Tax=Schistosoma rodhai... [more]
A0A095AW96_SCHHA6.450e-637.80Tubulin-specific chaperone E n=6 Tax=Schistosoma T... [more]
A0A7S3AJB9_9EUKA7.300e-640.24Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125589contigM-pyrifera_M_contig125589:41..319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.8748717-CDS-M-pyrifera_M_contig125589:40..3191622815771.8748717-CDS-M-pyrifera_M_contig125589:40..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125589 41..319 +
1692277561.9878519-CDS-M-pyrifera_M_contig125589:40..3191692277561.9878519-CDS-M-pyrifera_M_contig125589:40..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125589 41..319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125589.5178.1prot_M-pyrifera_M_contig125589.5178.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125589 41..319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125589.5178.1

>prot_M-pyrifera_M_contig125589.5178.1 ID=prot_M-pyrifera_M_contig125589.5178.1|Name=mRNA_M-pyrifera_M_contig125589.5178.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
TSSATATPTLWFENLEALSIRNCQLASWGAVDALALFPRLQWLQMQGCPV
LSAGEGVLPRVRQEVIARLPQLKNLNHSEVRKREREDAEKAYV
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mRNA from alignment at M-pyrifera_M_contig125589:41..319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125589.5178.1 ID=mRNA_M-pyrifera_M_contig125589.5178.1|Name=mRNA_M-pyrifera_M_contig125589.5178.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig125589:41..319+ (Macrocystis pyrifera P11B4 male)
ACTTCCTCCGCCACCGCCACACCAACACTTTGGTTCGAAAACCTCGAGGC ACTCTCCATCCGCAACTGCCAGTTGGCTTCTTGGGGAGCTGTGGACGCAC TGGCTCTTTTTCCTCGCTTGCAGTGGCTGCAGATGCAAGGATGTCCCGTC TTGTCTGCGGGAGAAGGAGTGCTCCCACGCGTGCGACAAGAGGTGATCGC TCGTCTTCCACAACTCAAGAACCTCAACCACTCTGAGGTGCGCAAGCGAG AGCGAGAGGATGCAGAGAAGGCGTATGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125589:41..319+

>mRNA_M-pyrifera_M_contig125589.5178.1 ID=mRNA_M-pyrifera_M_contig125589.5178.1|Name=mRNA_M-pyrifera_M_contig125589.5178.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig125589:41..319+ (Macrocystis pyrifera P11B4 male)
ACTTCCTCCGCCACCGCCACACCAACACTTTGGTTCGAAAACCTCGAGGC
ACTCTCCATCCGCAACTGCCAGTTGGCTTCTTGGGGAGCTGTGGACGCAC
TGGCTCTTTTTCCTCGCTTGCAGTGGCTGCAGATGCAAGGATGTCCCGTC
TTGTCTGCGGGAGAAGGAGTGCTCCCACGCGTGCGACAAGAGGTGATCGC
TCGTCTTCCACAACTCAAGAACCTCAACCACTCTGAGGTGCGCAAGCGAG
AGCGAGAGGATGCAGAGAAGGCGTATGTCACTTCCTCCGCCACCGCCACA
CCAACACTTTGGTTCGAAAACCTCGAGGCACTCTCCATCCGCAACTGCCA
GTTGGCTTCTTGGGGAGCTGTGGACGCACTGGCTCTTTTTCCTCGCTTGC
AGTGGCTGCAGATGCAAGGATGTCCCGTCTTGTCTGCGGGAGAAGGAGTG
CTCCCACGCGTGCGACAAGAGGTGATCGCTCGTCTTCCACAACTCAAGAA
CCTCAACCACTCTGAGGTGCGCAAGCGAGAGCGAGAGGATGCAGAGAAGG
CGTATGTC
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