mRNA_M-pyrifera_M_contig125578.5175.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A1G0G5Z5_9GAMM (Porin_4 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G5Z5_9GAMM) HSP 1 Score: 137 bits (345), Expect = 9.730e-36 Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGAS---SDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATG-------NSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDG 453
PN+NG + VG+YDP+ ETD PRFEGE+ YTT + NG+ IW+DG WQ++E + G S +D +GAG + + + GYYY GD L +L F+ G +++DNDG+YVQG+YTFNG+TKV SYGES+EDG
Sbjct: 209 PNMNGFGLSVGIYDPAEPSLGAAPNQLETDVPRFEGEVMYTTAYTNGAASIWVDGTWQEVEVNAAGISMNGADYDREGWGAGAQASMSGFELTGYYYDGDNLETTLGFLTTPATSLAGVPNTTAPTQFEDSDNDGFYVQGTYTFNGRTKVGVSYGESNEDG 369
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A6L8EHL5_9GAMM (Porin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EHL5_9GAMM) HSP 1 Score: 127 bits (320), Expect = 2.560e-32 Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTR---CDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDG 453
P++NG Q+ VG++DP Q +G + ETDTP+F+ E T+ + F+ GSF W +WQ E + ++SDV + G + +++ G YY G+ LG L +GG C+ G C+EADN+GYYVQ SYTFNG TK+ G YGES +DG
Sbjct: 193 PDMNGFQLSVGIFDP---QEPLGGNISETDTPQFQAEATFNSAFEGGSFSGWAGFIWQ--EQEIVASNSDVETVGWNIGAQVSAQGFSMTGSYYDGEALGSLLHNIGGGDGFGCNDMG--CKEADNEGYYVQASYTFNGATKIGGGYGESKQDG 339
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A1G0K1H8_9GAMM (Porin_4 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K1H8_9GAMM) HSP 1 Score: 121 bits (303), Expect = 1.010e-29 Identity = 72/182 (39.56%), Postives = 96/182 (52.75%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIE-----------------------------SSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGT---RCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
P+ING +EVG++DP G ETDTP+F+ E +YT F+ GSF W LWQ+ E ++ GA+ D+ + G D+K G +NV+G YY G+ LG L +GG C T +C EADNDG Y+QGSYTFNGKTKV S+G S++D
Sbjct: 189 PDINGFNLEVGIFDPQE-----GASPSETDTPQFQSEASYTYAFEGGSFNAWFGLLWQEQEITSSPGIAAIPDSFVIDPVTGAVTGIPGTPAIPGATGDIESFGWNVGVDIKFGGFNVVGSYYDGEALGALLFALGGGDAWACSTT--NCDEADNDGGYIQGSYTFNGKTKVGLSWGYSAQD 363
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A2E6KRR6_9GAMM (Porin_4 domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E6KRR6_9GAMM) HSP 1 Score: 115 bits (288), Expect = 1.060e-27 Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGA---SSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
P+++GL +EVG++DP+ E + +TD P+ + E Y+T+FD GS +W G++Q++E GA + DVT A G + +GP + +Y G+ LG S++ T +C EAD DGYYVQG+YT GKTK+ SYGES++D
Sbjct: 182 PDMSGLTLEVGVFDPN-EGSGGNTATFQTDVPQLQMEANYSTSFDGGSIALWAGGVYQEMEGRNAGAFNTTGDVTTQAINLGINANMGPMGFVASFYDGEALG-SVRVADTNSYHCTSTACTEADADGYYVQGTYTMGGKTKIGLSYGESNQD 332
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A353VYK1_9GAMM (Porin_4 domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353VYK1_9GAMM) HSP 1 Score: 114 bits (286), Expect = 1.660e-27 Identity = 60/152 (39.47%), Postives = 93/152 (61.18%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLG--RSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
P+++G +EVG++DP ++ G+ ETDTP+F+ E +Y+T+FD GS +W GL Q++E + A +VT F G + G +++G ++ G+ +G R+L G +G +C EADNDGYY+Q Y NG T V SYGES++D
Sbjct: 182 PDMSGFGIEVGIFDP--DENTAGSF--ETDTPQFQMEASYSTSFDGGSVMVWAGGLHQEMERT---AGGEVTSVGFNLGAKVSAGGLSLVGSWFDGEAIGTIRTLDSFSGNAFTCSGANCTEADNDGYYIQAMYNMNGATNVGLSYGESNQD 326
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: D5C2T6_NITHN (Porin_4 domain-containing protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) TaxID=472759 RepID=D5C2T6_NITHN) HSP 1 Score: 102 bits (254), Expect = 1.280e-22 Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSR---EQTAVG-------------NILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDGYNADLN 471
P++ G +V + DPS+ E AV N + ETDTPR EGEI+Y TF+NGS+QIW G++Q+ S L G +D+ V + AG ++ + + G YY G+GLG S + DATG ++ DN G+ VQG YT +TKV+ SYG S D + D N
Sbjct: 216 PDMMGFKVSLAGVDPSQICGEGFAVNPATGDVVPVASGVNCVTETDTPRGEGEISYAGTFNNGSYQIWGSGMYQN--SELQGTGNDIDVWGWTAGTQVQFMGFELTGSYYDGEGLGTSF-LLDADSLDATG---EKRDNKGWLVQGGYTIMDRTKVAASYGRSEADETSNDSN 382
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: Q3J7Z2_NITOC (Porin_4 domain-containing protein n=3 Tax=Nitrosococcus oceani TaxID=1229 RepID=Q3J7Z2_NITOC) HSP 1 Score: 100 bits (248), Expect = 8.520e-22 Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSRE--QTAV----GNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGAS---SDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
P++ G +V + DPS+ + AV N ET++PR EGEI+Y TF+NGS+Q+W G++Q+++ G D +V + AG ++ + V G YY G+GLG S + DATG Q+ DN G+ VQG YT G TKV+ SYG S D
Sbjct: 216 PDMMGFKVSLAAVDPSKVCGEGAVFASGANCATETNSPRGEGEISYAGTFNNGSYQVWGSGMYQNVKRQSVGGGFGDDDFSVWGWTAGTQVQFMGFEVNGSYYDGEGLGTSF-LMDADSLDATG---QKRDNKGWLVQGGYTILGHTKVAASYGRSEAD 370
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A4P7BYP6_9GAMM (Porin n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7BYP6_9GAMM) HSP 1 Score: 99.4 bits (246), Expect = 1.810e-21 Identity = 66/171 (38.60%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSR---EQTAV----GNILD---------ETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDGYNAD 465
P++ G +V + DPS+ E + + GN++ ETDTPR EGEI+Y TF+NGS+Q+W G+WQD E ++V + AG ++ + V G YY G+GLG S + DATG ++ DN G+ VQG YT +TKV+ SYG S D N D
Sbjct: 228 PDMMGFKVALAGVDPSQICGEGSVINPVTGNLIPVASGVNCATETDTPRAEGEISYAGTFNNGSYQVWGAGMWQDAEFQ---NGTEVEAWGWTAGTQIQFMGFEVTGSYYDGEGLGTSF-LLDADSLDATG---EKRDNRGWLVQGGYTIMDRTKVAASYGRSEADETNND 391
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: D8KAG6_NITWC (Porin_4 domain-containing protein n=1 Tax=Nitrosococcus watsoni (strain C-113) TaxID=105559 RepID=D8KAG6_NITWC) HSP 1 Score: 97.4 bits (241), Expect = 8.460e-21 Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSR---EQTAVG---NILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
P++ G +V + DPS+ E + N ET +PR EGE++Y TF+NGS+Q+W G+WQ++ S +S+D V + AG ++ + V G YY G+GLG S + DATG Q+ DN G+ QG YT G TK++ SYG S D
Sbjct: 228 PDMMGFKVSLAAVDPSQVCGEGAGLAGGVNCARETQSPRGEGEVSYAGTFNNGSYQVWGSGMWQNVRYS-GNSSNDFNVWGWTAGAQVQFMGFEVNGSYYDGEGLGTSF-LMDADSLDATG---QKRDNRGWLAQGGYTILGHTKLAVSYGISRAD 378
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A7W1WXV4_9GAMM (Porin n=1 Tax=Marinobacterium sp. 3-1745 TaxID=2756129 RepID=A0A7W1WXV4_9GAMM) HSP 1 Score: 84.0 bits (206), Expect = 4.080e-16 Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 1
Query: 1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSL--QFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGE 438
P NG Q+ VG++DPS+ + DTPRFEGE+TY T F+NG+F+ W+ GL+Q + + + + G ++KLG ++ + +G+ + F+ A+ DGY VQGSYTF G +++ SYGE
Sbjct: 192 PTKNGFQLAVGIFDPSKSDSDSSE-----DTPRFEGELTYATDFNNGAFKAWLGGLYQSSDDPDGTEVNSIDSTGVSYGANVKLGDLSLTASGFQSEGIHPAAIDNFI----------VSDSAEMDGYLVQGSYTF-GPNRIALSYGE 323 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125578.5175.1 >prot_M-pyrifera_M_contig125578.5175.1 ID=prot_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQback to top mRNA from alignment at M-pyrifera_M_contig125578:43..513- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125578.5175.1 ID=mRNA_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig125578:43..513- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125578:43..513- >mRNA_M-pyrifera_M_contig125578.5175.1 ID=mRNA_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig125578:43..513- (Macrocystis pyrifera P11B4 male)back to top |