mRNA_M-pyrifera_M_contig125576.5173.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A7X5WTD6_9ACTN (Histidine kinase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTD6_9ACTN) HSP 1 Score: 189 bits (480), Expect = 2.490e-58 Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEEPDD 396
L+SVD +TVAGSVAVDLAHL+SELMENATQFSPPE V+VVG Y+LTLTDRGIGMS EQ+ TAN+TLAEPP+VGLDLSRSLGFTVVSRLAHRLG+ V L AG +GGV+A+V+IPAEM+G E PDD
Sbjct: 45 LVSVDGATVAGSVAVDLAHLLSELMENATQFSPPEFMVDVVGALDETGVYRLTLTDRGIGMSPEQLQTANETLAEPPIVGLDLSRSLGFTVVSRLAHRLGITVTLLAGTDGGVSAMVSIPAEMIGSVEVPDD 176
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A6G0A7E8_9ACTN (HAMP domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A7E8_9ACTN) HSP 1 Score: 153 bits (386), Expect = 2.400e-40 Identity = 79/138 (57.25%), Postives = 105/138 (76.09%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAE-MVGRSEEPDDAMPVL 411
L+++D T++G+VAVDLAH++SELMENATQFSPPE VE+VG+R D Y L++ D+GIGM+ EQ+A AN+ LA+PPLVGL L+RSLGF VV RL+ R G+ VQL GGVTA+VTIPA ++ +P +PV+
Sbjct: 514 LLALDEVTISGNVAVDLAHVLSELMENATQFSPPETMVEIVGHRNGDGGYVLSVADQGIGMAPEQLAEANRQLAKPPLVGLSLARSLGFIVVGRLSARFGIEVQLTTSPSGGVTALVTIPASHVIADDGDPTATLPVV 651
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A3M2GFU0_ACTSX (Histidine kinase domain-containing protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GFU0_ACTSX) HSP 1 Score: 147 bits (371), Expect = 9.050e-40 Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 1
Query: 31 GSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
G+VAVDLAHL+SELMENATQFSPP+ VEV G+ D SYQLT+TD GIGMSA+Q+A AN+ L PP++GL+L RSLGFTVVSR+A RLG+ VQ+ GGVTA+V +P +V
Sbjct: 1 GNVAVDLAHLLSELMENATQFSPPDTRVEVAGHLAGDGSYQLTITDHGIGMSADQLARANEILQNPPVIGLELGRSLGFTVVSRIAARLGLGVQVTTSTHGGVTALVVLPPTLV 114
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A7X7HRM2_9ACTN (Sensor histidine kinase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRM2_9ACTN) HSP 1 Score: 149 bits (377), Expect = 4.590e-39 Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
L+S D VA +VA DLAHL+SELMENAT FSPPE VEVVG+R D Y +++TD GIGMSAEQ++ AN++LA+PPLVGL LSRSLGF VV RLA R G+ V++ GGVTAVVT+P+ ++
Sbjct: 524 LLSFDEILVASNVAADLAHLLSELMENATNFSPPETRVEVVGHRTKSDGYVISVTDHGIGMSAEQVSEANESLAKPPLVGLALSRSLGFIVVGRLAGRHGITVRVMQSPSGGVTAVVTVPSSLI 647
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001AA08217 (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA08217) HSP 1 Score: 149 bits (376), Expect = 5.860e-39 Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVG----RSEEPDDAMPVLTLDDQPTI 435
L+++D +TV G+VAVDLAHL+SELMENAT FSPP+ VE+VG+R + Y ++++D+GIGMSA+Q+A AN+ LA PPLVGL LSRSLGF V+ RLA R + V+L A GGVTA+VT+P ++V +EP + + D P +
Sbjct: 514 LLALDDATVGGNVAVDLAHLLSELMENATHFSPPDTMVEIVGHRAGAEGYIISVSDQGIGMSADQLAEANEQLARPPLVGLALSRSLGFIVIGRLAQRFDISVKLTASPSGGVTALVTLPPDLVTYPGEEGQEPAEPAAAPAVADVPAV 662
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A5Q2REM1_9ACTN (HAMP domain-containing protein n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2REM1_9ACTN) HSP 1 Score: 146 bits (368), Expect = 6.930e-38 Identity = 74/127 (58.27%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRS 381
L+++D + V G+ A+D+AHL+SELMENAT FSPPE VE++G++ AD +Y L+++D+GIGMS EQ A NK LAEPPLVGL LSRSLGFTVV RLA R + V+L + GGVTA+VT+P ++ S
Sbjct: 528 LVAMDDAVVTGAAAMDVAHLLSELMENATSFSPPETSVEILGHQNADGTYVLSISDQGIGMSDEQFAETNKLLAEPPLVGLTLSRSLGFTVVGRLAARFSIDVRLTSSPTGGVTALVTLPTAILESS 654
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A8F4FUH0_9ACTN (HATPase_c domain-containing protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FUH0_9ACTN) HSP 1 Score: 143 bits (361), Expect = 1.840e-37 Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
L+S D VA + A DLAHL+SELMENAT FSPPE VEVVG+R D Y +++TD GIGMS+EQI AN++LA+PPLVGL LSRSLGF VV RL+ R G+ V++ GGVTAVV+IP +V
Sbjct: 45 LLSFDEILVASNAAADLAHLLSELMENATNFSPPETRVEVVGHRTKADGYVISVTDHGIGMSSEQILDANESLAKPPLVGLALSRSLGFIVVGRLSGRHGIAVRMMPSPSGGVTAVVSIPPSLV 168
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001E4D1741 (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4D1741) HSP 1 Score: 139 bits (350), Expect = 1.930e-35 Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEE 387
L+++D +T+AG+VAVDLAH++SELMENAT FSPP+ +V V G R + Y +T+TD GIGM+AEQ A AN LA PPLVGL L+RSLGF VV RLA R G+ V ++A +GG A VT+P +V +E+
Sbjct: 520 LVALDQATIAGNVAVDLAHMLSELMENATHFSPPDTNVRVDGRRDDRNGYVVTVTDAGIGMNAEQRADANAQLARPPLVGLSLTRSLGFIVVGRLAARFGLSVAVSAAPDGGTVATVTLPYSVVEYAED 648
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A6N7FVA6_9ACTN (HAMP domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FVA6_9ACTN) HSP 1 Score: 138 bits (348), Expect = 3.150e-35 Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEEPDDAMPVLTL 417
L+++D ++ + AVD+AHL++ELMENATQFSPPE VEVVG+R D SY L+++D GIGMS+E +A AN+ LA PP++GL LSR+LGFTVV RLA R + V+L GGVTA+ TIP ++ A P+ +L
Sbjct: 584 LVALDDLSIDAAAAVDIAHLLAELMENATQFSPPETHVEVVGHRTRDGSYVLSVSDEGIGMSSEHLAEANEQLAHPPVMGLALSRALGFTVVGRLASRHDLDVRLTPSPTGGVTALTTIPPALLVDGPSTAGATPIASL 722
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001C62667D (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62667D) HSP 1 Score: 138 bits (348), Expect = 3.700e-35 Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 1
Query: 1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
L+ VD S V +VA DLAHL+SELMENATQFSPP+ VEVVG+ Y +++TD+GIGMSA+Q+A AN L PPL+GL LSRSLGF VV RLA R G+ V+L GGVT++VTIP+ ++
Sbjct: 538 LLDVDESEVISTVAADLAHLLSELMENATQFSPPDSRVEVVGHGNNGGGYTVSITDQGIGMSADQLAEANALLTRPPLLGLALSRSLGFIVVGRLAARHGIAVRLVPSPAGGVTSIVTIPSNVL 661 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125576.5173.1 >prot_M-pyrifera_M_contig125576.5173.1 ID=prot_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp MSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQback to top mRNA from alignment at M-pyrifera_M_contig125576:5..439+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125576.5173.1 ID=mRNA_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig125576:5..439+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125576:5..439+ >mRNA_M-pyrifera_M_contig125576.5173.1 ID=mRNA_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig125576:5..439+ (Macrocystis pyrifera P11B4 male)back to top |