mRNA_M-pyrifera_M_contig125574.5172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125574.5172.1
Unique NamemRNA_M-pyrifera_M_contig125574.5172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A7S2JMU9_9EUKA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JMU9_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 8.040e-20
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   22 PSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSS 252
            P  TRPRP  ATS+PGLL L +SEWDAV+LE+  LK  L   RQ+L   LYQ+DAA RVIARL KERD A ++++ +
Sbjct:   71 PKTTRPRPITATSIPGLLSLFQSEWDAVMLETFALKEQLSQVRQELAHALYQHDAACRVIARLVKERDQARSALAQA 147
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A813HIU3_POLGL (Pre-mRNA-processing factor 19 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HIU3_POLGL)

HSP 1 Score: 92.0 bits (227), Expect = 1.610e-19
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 DFFDAGPPSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            D  D       RPRPA ATS+PG+L L++SEWDA++ E+  LK  L+TTR+QL+  LYQ+DAA RVIARL +ERDA+ A V   Q
Sbjct:   52 DLVDVKANKAVRPRPASATSIPGMLSLLQSEWDALMSETYELKTQLDTTRKQLSHALYQHDAACRVIARLLRERDASRAQVGQLQ 136
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A813E1J6_POLGL (Pre-mRNA-processing factor 19 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E1J6_POLGL)

HSP 1 Score: 91.7 bits (226), Expect = 2.210e-19
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 DFFDAGPPSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            D  D       RPRPA ATS+PG+L L++SEWDA++ E+  LK +L+TTR+QL+  LYQ+DAA RVIARL +ERDA+   V+  Q
Sbjct:   52 DLVDVKANKAVRPRPASATSIPGMLSLLQSEWDALMSETYELKTSLDTTRKQLSHALYQHDAACRVIARLLRERDASRGQVAQLQ 136
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A2C6L7F1_9APIC (Pre-mRNA-processing factor 19 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L7F1_9APIC)

HSP 1 Score: 91.7 bits (226), Expect = 2.410e-19
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 DFFDAGPPSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            D  D   P   RPRP  A S+PGLL L ++EWD+ + E  TLK+ LETTRQQL+Q LYQ DAATRVIARL +ERDA+   V   Q
Sbjct:   52 DIVDIKCPKAARPRPVTAASIPGLLSLFQNEWDSTMTEVFTLKQHLETTRQQLSQSLYQQDAATRVIARLLRERDASRDQVHELQ 136
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A7S2STX6_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.040e-19
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:   34 RPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            RPRP  ATS+PGLL   ++EWDAV+LE+ TLK+ L+TTR++L+QVLYQ+DAA RVIARL +ERD A A ++  Q
Sbjct:   60 RPRPITATSIPGLLSHFQTEWDAVMLETFTLKQHLDTTRKELSQVLYQHDAACRVIARLTRERDEARAMLAQRQ 133
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A059LNS0_9CHLO (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LNS0_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 3.970e-19
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   37 PRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALA 237
            PRP  ATS+PGLL L ++EWDA +LE   L++AL  TRQ+L   LYQ+DAATRVI+R  +ERDAALA
Sbjct:   61 PRPTPATSIPGLLSLFQNEWDATMLEMHALRQALHATRQELAHALYQHDAATRVISRALRERDAALA 127
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: B9PV36_TOXGV (Pre-mRNA-processing factor 19 n=17 Tax=Sarcocystidae TaxID=5809 RepID=B9PV36_TOXGV)

HSP 1 Score: 90.1 bits (222), Expect = 8.080e-19
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 DFFDAGPPSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            D  D   P  +RPRP  A S+PGLL L +SEWDA + E   LK+ LET RQQL+Q LYQ DAATRVI+RL +ERDA+   V + Q
Sbjct:   52 DLADVKCPKASRPRPVTAASIPGLLSLFQSEWDATMTEVFALKQHLETARQQLSQSLYQQDAATRVISRLLRERDASRQQVHALQ 136
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A7S3WLJ3_9SPIT (Pre-mRNA-processing factor 19 n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WLJ3_9SPIT)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-18
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   34 RPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            RPRPA ATS+PG+L L++SEWDA++ ES  LK  L+TTR+QL+  LYQ+DAA RVIARL +ERD A + V+  Q
Sbjct:   63 RPRPAAATSIPGMLSLLQSEWDALMTESYELKTHLDTTRKQLSHALYQHDAACRVIARLLRERDNARSQVAQLQ 136
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BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A7S2B670_9DINO (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2B670_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-18
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   34 RPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVS 246
            RPRPA ATS+PG+L L++SEWDAV+ E+  LK  L+TTR+QL+  LYQ+DAA RVIARL +ERDAA   V+
Sbjct:   80 RPRPASATSIPGMLSLLQSEWDAVMSETYELKSHLDTTRKQLSHALYQHDAACRVIARLLRERDAAREQVN 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Match: A0A812K814_SYMPI (Pre-mRNA-processing factor 19 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812K814_SYMPI)

HSP 1 Score: 89.4 bits (220), Expect = 1.470e-18
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   34 RPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTRQQLTQVLYQYDAATRVIARLRKERDAALASVSSSQ 255
            +PRPA ATS+PG+L L+++EWDA++ E+  LK  L+TTR+QL+  LYQ+DAA RVIARL +ERDAA A V+  Q
Sbjct:   63 KPRPAAATSIPGMLTLLQTEWDALMSETYELKTNLDTTRKQLSHALYQHDAACRVIARLLRERDAARAQVAQLQ 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125574.5172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2JMU9_9EUKA8.040e-2058.44Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=C... [more]
A0A813HIU3_POLGL1.610e-1955.29Pre-mRNA-processing factor 19 n=1 Tax=Polarella gl... [more]
A0A813E1J6_POLGL2.210e-1954.12Pre-mRNA-processing factor 19 n=1 Tax=Polarella gl... [more]
A0A2C6L7F1_9APIC2.410e-1957.65Pre-mRNA-processing factor 19 n=1 Tax=Cystoisospor... [more]
A0A7S2STX6_9STRA3.040e-1962.16Pre-mRNA-processing factor 19 n=1 Tax=Rhizochromul... [more]
A0A059LNS0_9CHLO3.970e-1962.69Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=H... [more]
B9PV36_TOXGV8.080e-1956.47Pre-mRNA-processing factor 19 n=17 Tax=Sarcocystid... [more]
A0A7S3WLJ3_9SPIT1.070e-1860.81Pre-mRNA-processing factor 19 n=1 Tax=Strombidinop... [more]
A0A7S2B670_9DINO1.090e-1863.38Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=A... [more]
A0A812K814_SYMPI1.470e-1859.46Pre-mRNA-processing factor 19 n=2 Tax=Symbiodinium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125574contigM-pyrifera_M_contig125574:53..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score90.9
Seed ortholog evalue4e-16
Seed eggNOG ortholog5811.TGME49_120210
KEGG koko:K10599
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022607,GO:0022613,GO:0022618,GO:0032446,GO:0032991,GO:0034622,GO:0034641,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061630,GO:0061659,GO:0065003,GO:0070534,GO:0070647,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.Prp19/Pso4-like
EggNOG OGs3Y9YY@5794,3YNQX@5796,3YQI1@5809,KOG0289@1,KOG0289@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.6341693-CDS-M-pyrifera_M_contig125574:52..3791622815771.6341693-CDS-M-pyrifera_M_contig125574:52..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125574 53..379 -
1692277561.8977823-CDS-M-pyrifera_M_contig125574:52..3791692277561.8977823-CDS-M-pyrifera_M_contig125574:52..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125574 53..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125574.5172.1prot_M-pyrifera_M_contig125574.5172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125574 53..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125574.5172.1

>prot_M-pyrifera_M_contig125574.5172.1 ID=prot_M-pyrifera_M_contig125574.5172.1|Name=mRNA_M-pyrifera_M_contig125574.5172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
DFFDAGPPSGTRPRPAGATSVPGLLRLMESEWDAVLLESATLKRALETTR
QQLTQVLYQYDAATRVIARLRKERDAALASVSSSQARSASAAATSAVSSS
SSSSSSLHE
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mRNA from alignment at M-pyrifera_M_contig125574:53..379-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125574.5172.1 ID=mRNA_M-pyrifera_M_contig125574.5172.1|Name=mRNA_M-pyrifera_M_contig125574.5172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig125574:53..379- (Macrocystis pyrifera P11B4 male)
GATTTTTTTGATGCAGGTCCACCAAGTGGGACTCGTCCACGCCCTGCTGG
GGCAACTTCTGTTCCTGGGTTGCTGCGTTTGATGGAGTCTGAGTGGGACG
CTGTGTTGTTGGAGAGTGCGACTTTGAAACGTGCCTTGGAAACAACACGA
CAGCAATTGACACAAGTTTTATATCAATATGATGCTGCGACCCGTGTCAT
TGCAAGGTTGCGGAAAGAACGTGATGCAGCTTTGGCTAGTGTATCATCTA
GTCAAGCAAGATCTGCCTCTGCAGCTGCGACGTCTGCAGTATCATCATCA
TCATCATCGTCATCGTCTTTGCATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125574:53..379-

>mRNA_M-pyrifera_M_contig125574.5172.1 ID=mRNA_M-pyrifera_M_contig125574.5172.1|Name=mRNA_M-pyrifera_M_contig125574.5172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig125574:53..379- (Macrocystis pyrifera P11B4 male)
GATTTTTTTGATGCAGGTCCACCAAGTGGGACTCGTCCACGCCCTGCTGG
GGCAACTTCTGTTCCTGGGTTGCTGCGTTTGATGGAGTCTGAGTGGGACG
CTGTGTTGTTGGAGAGTGCGACTTTGAAACGTGCCTTGGAAACAACACGA
CAGCAATTGACACAAGTTTTATATCAATATGATGCTGCGACCCGTGTCAT
TGCAAGGTTGCGGAAAGAACGTGATGCAGCTTTGGCTAGTGTATCATCTA
GTCAAGCAAGATCTGCCTCTGCAGCTGCGACGTCTGCAGTATCATCATCA
TCATCATCGTCATCGTCTTTGCATGAGGATTTTTTTGATGCAGGTCCACC
AAGTGGGACTCGTCCACGCCCTGCTGGGGCAACTTCTGTTCCTGGGTTGC
TGCGTTTGATGGAGTCTGAGTGGGACGCTGTGTTGTTGGAGAGTGCGACT
TTGAAACGTGCCTTGGAAACAACACGACAGCAATTGACACAAGTTTTATA
TCAATATGATGCTGCGACCCGTGTCATTGCAAGGTTGCGGAAAGAACGTG
ATGCAGCTTTGGCTAGTGTATCATCTAGTCAAGCAAGATCTGCCTCTGCA
GCTGCGACGTCTGCAGTATCATCATCATCATCATCGTCATCGTCTTTGCA
TGAG
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