mRNA_M-pyrifera_M_contig125559.5168.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: F2UL12_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UL12_SALR5) HSP 1 Score: 77.0 bits (188), Expect = 2.600e-13 Identity = 58/157 (36.94%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAAT----VDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWS 489
VW + LPS T L PVPAP+GGVVV+ N +FY+ QS A+NG++ A+ + T SLDL DGA LTPT +L +L +GD +V + + V GLR+ L + G R+ IF SR S LL W+
Sbjct: 256 VWHQENLPSDTFALQPVPAPLGGVVVIGVNVLFYVTQSLVRSLALNGYSRASTNAPIQEQTGISLDL---------DGAHHALLTPTQILFALPSGDIHLLTIVCTDVT-----VDGLRMDKLATSVIGSDICTLGRRH--IFIASRHATSLLLEWA 396
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A4V1IVT9_9FUNG (CPSF A subunit region-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IVT9_9FUNG) HSP 1 Score: 75.1 bits (183), Expect = 1.200e-12 Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 1
Query: 1 IDLARQSLTRVWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACA-AVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWSD 492
+DL + ++ D LP HTLLPVPAP+GG+ V++++ + Y+DQ + AVN A+A T+ SL L TLD + FLTP LL++L G+ +L+ S + +R+ + A LT CA T + + F GSR+ DS L+ +++
Sbjct: 240 LDLTNRKFPIIYRRDRLPYDCHTLLPVPAPLGGLFVIANSCLIYVDQGSPGVGVAVNARASAC----TSFSLREEQMQLGITLDASHYTFLTPYRLLITLAGGELFLAELIRDGRS-----ITDIRLGKVGASVLTS-CACT-LGSSYFFLGSRVADSLLIQYTE 393
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A8J4PUB6_9MYCE (CPSF_A domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PUB6_9MYCE) HSP 1 Score: 74.7 bits (182), Expect = 1.650e-12 Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPP-CALTGTRNRWIFHGSRLGDSFLLSWSDPA 498
+WS D P + H+L+ VP P+GG +V+S N +FY++QS+R AVN +A + LDLS +L TLD + FL + SL+ G+ L L+ S G S Q + ++ LT C L+ N IF GSRLGDS LL +++ +
Sbjct: 337 IWSIDQFPYNCHSLVSVPDPLGGALVISANILFYINQSSRYGLAVNEYATKDTGDQFSFPLDLSL-NLVFTLDRSNFVFLESDKFIGSLKGGELLIFHLI---SDGRSVQ--RMHVSKAGGSVLTSSVCVLS---NNLIFLGSRLGDSLLLQYTEKS 484
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM) HSP 1 Score: 74.7 bits (182), Expect = 1.650e-12 Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACA-AVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSW 486
+ S D LP S L+ +P PVGG++++S NAI +++QS++ AVNG+A++T D SLD S L L+G FL +L LRNGD +L+ S + + + + TL P C+ N + F GSRLGDS+L+ +
Sbjct: 284 IQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDF----SLDHSFEHLGLALEGLYHVFLDSDEILFILRNGDLYIVKLIIEERS-----LTRIELKKVGTSTL-PSCSCL-VANGYFFVGSRLGDSYLIQY 425
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 1.680e-12 Identity = 65/219 (29.68%), Postives = 101/219 (46.12%), Query Frame = 1
Query: 1 IDLARQSLTRVWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQS-TRACAAVNGFAAATVDSTTTAS-----------------------LDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDA----LHTQLVTSSSS--------------GPSQQVIGLRITPLHAYTLTPPCALTGTRNRW--------------IFHGSRLGDSFLLSWS 489
I+L + +W + LP + L+PVP+P+GG+ V+S NA+ +++QS R+ AVNG+A ATVD +DLS+ + LD R FLTPTS+LLSLR G+ LH VT++++ G +V+G + P+ + PC++ +F GSR+GDS L+ +S
Sbjct: 348 INLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSMLLSLRTGEVYALRLHLTTVTAAAADAAGCSRPPGGAAFGTPNRVVGQSMRPVGRAS---PCSVLAVAXXXXXXXXXXXXASKGLVFMGSRVGDSLLVDYS 563
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A397U2H9_9GLOM (CPSF A subunit region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U2H9_9GLOM) HSP 1 Score: 73.9 bits (180), Expect = 3.050e-12 Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1
Query: 1 IDLARQSLTRVWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACA-AVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWSDPAS 501
ID++++ ++S D LP S+ L+P+ PVGG+++++ NAI ++DQS+ AVNG+A +T D LD S L L+G FL +LL LRNG +L+ S RIT T T P + F GSRLGDS L+ + S
Sbjct: 287 IDISQKLYPVIYSMDKLPHSSVKLIPIQKPVGGILIITANAIIHVDQSSPGIGIAVNGYATSTTDFP----LDNSFEHLGLALEGCHYVFLDKDEILLFLRNGGMYLVKLIKDGRSIS-------RITIEKVGTNTLPSCACYVAPDYFFLGSRLGDSHLIQYKAAKS 443
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A7J7MMM3_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MMM3_9MAGN) HSP 1 Score: 73.9 bits (180), Expect = 3.050e-12 Identity = 57/153 (37.25%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWS 489
+WS+D L + LL VP+P+GGV+VLS NAI+Y QS A+N +A A VDS S +L +S LD A +L+ +LS + G+ L LV + V L ++ A LT G N + F GSRLGDS L+ ++
Sbjct: 300 IWSADNLSHDAYKLLAVPSPIGGVLVLSANAIYYHSQSVSCLLALNNYAVA-VDS----SQELPRSSFTVELDAANTTWLSHEVAMLSTKTGELLLLTLVYDGRA-----VQRLELSKSRASVLTSDVTTIG--NSFFFLGSRLGDSMLVQFT 440
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A833RH79_9POAL (Cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RH79_9POAL) HSP 1 Score: 73.6 bits (179), Expect = 4.140e-12 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWSDPAS 501
+WS+ LP + LL VPAP+GGV+V+ NAI+Y QST A+N F+ S SL++ ++ LD A +L+ L S++ G+ L L+T ++G Q + L T ++ LT +T N + F SRLGDS L+ + AS
Sbjct: 278 IWSASNLPHDAYKLLAVPAPLGGVLVMCANAIYYHSQSTSCSLALNSFS-----SQPDGSLEMPKSNFSVELDAANATWLSNDIALFSVKTGELL---LLTLVNNGRGVQRLDL--TKANSSVLTS--GMTTLGNSFFFLASRLGDSILVQYCSGAS 422
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: A0A200QB66_9MAGN (Cleavage/polyadenylation specificity factor n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QB66_9MAGN) HSP 1 Score: 72.8 bits (177), Expect = 7.670e-12 Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWS 489
+WS+ LP + LL VP+P+GGV+V+S NAI Y QS A+N FA VD S +L +S LD A +L P +LS + G+ L LV + V L ++ A LT A G N + F GSRLGDS L+ ++
Sbjct: 277 IWSAINLPHDAYKLLAVPSPIGGVLVVSANAIHYHSQSASCALALNHFAVP-VD----ISQELPRSSFSVELDAANATWLLPDVAMLSTKTGELLLLTLVYDG-----RVVQRLELSKSRASVLTSGIATVG--NSFFFLGSRLGDSMLVQYT 417
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Match: F6HAK2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=F6HAK2_VITVI) HSP 1 Score: 71.2 bits (173), Expect = 2.620e-11 Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 31 VWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRACAAVNGFAAATVDSTTTASLDLSTASLRRTLDGARGHFLTPTSLLLSLRNGDALHTQLVTSSSSGPSQQVIGLRITPLHAYTLTPPCALTGTRNRWIFHGSRLGDSFLLSWSDPAS 501
+WS+ LP + LLPVP+P+GGVVV+S N+I Y QS A+N +A + +S ++ +S LD A +L+ +LS + G+ L L+T + G + V L ++ A LT A G N F GSRLGDS L+ ++ S
Sbjct: 298 IWSAVNLPHDAYKLLPVPSPIGGVVVISANSIHYHSQSASCALALNNYAVSADNSQ-----EMPRSSFSVELDAANATWLSNDVAMLSTKTGELL---LLTLAYDG--RVVHRLDLSKSRASVLTSGIAAIG--NSLFFLGSRLGDSLLVQFTSILS 442 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125559.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125559.5168.1 >prot_M-pyrifera_M_contig125559.5168.1 ID=prot_M-pyrifera_M_contig125559.5168.1|Name=mRNA_M-pyrifera_M_contig125559.5168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp IDLARQSLTRVWSSDTLPSSTHTLLPVPAPVGGVVVLSDNAIFYLDQSTRback to top mRNA from alignment at M-pyrifera_M_contig125559:13..513- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125559.5168.1 ID=mRNA_M-pyrifera_M_contig125559.5168.1|Name=mRNA_M-pyrifera_M_contig125559.5168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125559:13..513- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125559:13..513- >mRNA_M-pyrifera_M_contig125559.5168.1 ID=mRNA_M-pyrifera_M_contig125559.5168.1|Name=mRNA_M-pyrifera_M_contig125559.5168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig125559:13..513- (Macrocystis pyrifera P11B4 male)back to top |