mRNA_M-pyrifera_M_contig125557.5167.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125557.5167.1
Unique NamemRNA_M-pyrifera_M_contig125557.5167.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A2E5X6Y6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X6Y6_9BACT)

HSP 1 Score: 113 bits (282), Expect = 3.080e-27
Identity = 64/132 (48.48%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 GDMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWVALFREL 396
            GD  E +R  A  LG+  R+  RGP  E ELP ++A A CLVLPSR+EGFG+P  EA  A +P+AIA  PALVE   P  P F  +D   CA A+R AL     EL+AG   A   +WDA+A  W A  R L
Sbjct:  250 GDEAECLRRRAGELGVTERVVFRGPFGEDELPGLYAAAGCLVLPSRLEGFGIPVAEAQAAGVPVAIASTPALVEVAGPLAPAFPVDDGRACAEAIRRALDTDAEELEAGRRRACARTWDAAADAWFAALRGL 381          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A382SJS7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382SJS7_9ZZZZ)

HSP 1 Score: 109 bits (272), Expect = 1.260e-26
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    4 DMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASA 366
            D +ER+R LA  LG++ R+   G  DESELPE++++AAC+ +PS++EGFG+  +EA  A +PL I+   AL E      PRF PEDPA CA A+R AL+    +++   A A R+SWD SA
Sbjct:  134 DEEERLRRLAEDLGVSKRVTFLGRFDESELPELYSRAACVAIPSKLEGFGIGVLEAQLAGVPLCISHADALNEVAGSHVPRFHPEDPADCARAIREALSLPTDQIELNRAQATRFSWDQSA 254          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A7C1WXI2_9BACT (Glycosyltransferase family 1 protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WXI2_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.820e-26
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 GDMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWVALFRELS 399
            G+ + R+R LA  LG+A+R++  G   ++ LP ++AQAAC+VLPS +EGFG+P +EA RA  PLAI++  AL E   P  P F P+DPA  A A+R ALA  +  L+  A  A+R SW+ SA   V  + E +
Sbjct:  233 GEEEARLRELARSLGVADRVQFLGQVTDAALPRLYAQAACVVLPSFLEGFGIPVLEAQRAGTPLAISNTGALPEVAGPGVPTFPPDDPAAAAEAIRAALATDEDVLEERARRAERSSWEESARALVGAWCEAA 365          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A2D6HIK9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HIK9_9BACT)

HSP 1 Score: 110 bits (274), Expect = 3.220e-26
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   10 DERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWVALFRELS 399
            DER+ A+A  LG+A+R+   G  D+ EL  ++A+AAC+ LPS +EGFG+ A+EA RA +PL ++D PAL E   P  P F P+DPA CA A+R ALA ++  L A    A+   W+ SAA  V  + E +
Sbjct:  232 DERLLAVARELGVADRVTFAGAVDDDELARLYARAACVALPSLLEGFGIAALEAQRAGVPLCVSDTPALREVAGPSVPTFAPDDPAACARALRAALAVTEDTLRAARERARGRRWEVSAALLVDAWTEAA 361          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A2D5W5I5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W5I5_9BACT)

HSP 1 Score: 110 bits (274), Expect = 4.240e-26
Identity = 59/132 (44.70%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 GDMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWVALFREL 396
            G   ER++ LA +LG+A R+   GP +E ELP+++A A CL LPSR+EGFG+P  EA  A +P+A+A  PAL+E      P F  +D   CA A+  AL    A LDA  A A   +WD +A +W A  R L
Sbjct:  247 GSEGERLQQLARKLGVAERVIFHGPFEERELPDLYAAAGCLALPSRLEGFGIPVAEAQAAGVPVAVARTPALLEVAGSGVPSFPVDDGQACAQALGRALETERAVLDAAGARALARTWDGAADKWFAALRGL 378          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A800G519_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G519_9BACT)

HSP 1 Score: 108 bits (271), Expect = 8.760e-26
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 DMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWV 378
            D D+R+ ALA  L +++RI L GP  + +LP + A AA +VLPS +EGFG+ A+EA RAR+PLAI+   AL E        F P+DP  CA A+R AL +S A+L+  A  A+ Y+WDA+A  +V
Sbjct:  233 DEDQRLLALAQSLKISHRIRLAGPCPDEDLPALLASAAAVVLPSHLEGFGIVALEAQRARVPLAISSAGALAETAAESARVFPPDDPQACALAIRQALQQSAADLEPAAIRAEGYTWDAAARIFV 357          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A2D6QEF6_9ARCH (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2D6QEF6_9ARCH)

HSP 1 Score: 102 bits (254), Expect = 2.500e-23
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 DMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWV 378
            D  +R+ ALA  L +++R+ L GP  + +LP + A AA +VLPS +EGFG+ A+EA RAR+PLAI+   AL E        F P+DP  CA+A+  AL +S A+L++ A  A+ ++WDA+A  +V
Sbjct:  233 DEAQRLIALARTLRISDRVRLAGPCPDEDLPALLASAAAVVLPSHLEGFGIVALEAQRARVPLAISSAGALAETAAESAIVFPPDDPQACASAIGQALQQSAADLESAAVRAEGFTWDAAARIFV 357          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A2D5AXF9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AXF9_9BACT)

HSP 1 Score: 102 bits (254), Expect = 4.680e-23
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 GDMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARWVALFRELS 399
            G   +R+ ALA  LG++ R+   GP  E  L  ++A+ A  V PSR+EGFG+  VEALRA  P+AIA+  AL E      PRF P+D + CA A+R  L   + +L+  A   +RYSW+ SAA  V ++ E++
Sbjct:  279 GGAQQRLEALARNLGVSERVCFLGPVAEERLAILYAECAAAVFPSRIEGFGIGVVEALRASAPVAIANAGALPEIAGSGVPRFAPDDASECARAIRATLGLGEEQLEEMAQGVERYSWERSAALLVDIWMEIA 411          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A523PVG3_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PVG3_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 5.460e-21
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  100 IFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSWDASAARW 375
            + ++AAC+VLPS +EGFG+ A+EA RAR+PLA++D  AL E    D P F P+DPA CA A+R AL      ++  A  A R++WDASA +W
Sbjct:    7 VSSRAACVVLPSHLEGFGIVALEAQRARVPLAVSDTGALREVAGADVPHFAPDDPAACARAIRAALDSDAGVIEQHARDAARFTWDASARQW 98          
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Match: A0A7C7YUX4_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YUX4_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 2.860e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 GDMDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGLPAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARSDAELDAGAAHAQRYSW----DASAARWV 378
            G+  ER+ ALA  L +  R+E  G ADE +LP +FA+AAC+V PS +EGFG+ AVEA RA  PLA++ +    E     TPRF+  D + CA A+  A       L+    +A R++W    DA    W+
Sbjct:  239 GEEQERLEALARSLQVTERVEFAGAADEGDLPRLFAEAACVVCPSELEGFGIVAVEAARAGAPLAVSRIAPHEEVASIATPRFEVGDASACARAIHEAQQAPTGALEQAQKNAGRFAWGSVADALVTSWI 368          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125557.5167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5X6Y6_9BACT3.080e-2748.48Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A382SJS7_9ZZZZ1.260e-2647.11Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7C1WXI2_9BACT1.820e-2645.11Glycosyltransferase family 1 protein n=1 Tax=Planc... [more]
A0A2D6HIK9_9BACT3.220e-2645.38Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5W5I5_9BACT4.240e-2644.70Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800G519_9BACT8.760e-2647.20Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]
A0A2D6QEF6_9ARCH2.500e-2344.00Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A2D5AXF9_9BACT4.680e-2342.11Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PVG3_9BACT5.460e-2150.00Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]
A0A7C7YUX4_9BACT2.860e-2040.77Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125557contigM-pyrifera_M_contig125557:3..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog469383.Cwoe_5498
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM glycosyl transferase group 1
EggNOG OGs2GK9J@201174,4CS70@84995,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.2783267-UTR-M-pyrifera_M_contig125557:2..81622815771.2783267-UTR-M-pyrifera_M_contig125557:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125557 3..8 +
1692277561.680997-UTR-M-pyrifera_M_contig125557:2..81692277561.680997-UTR-M-pyrifera_M_contig125557:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125557 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.288507-CDS-M-pyrifera_M_contig125557:8..4041622815771.288507-CDS-M-pyrifera_M_contig125557:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125557 9..404 +
1692277561.693614-CDS-M-pyrifera_M_contig125557:8..4041692277561.693614-CDS-M-pyrifera_M_contig125557:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125557 9..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125557.5167.1prot_M-pyrifera_M_contig125557.5167.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125557 9..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125557.5167.1

>prot_M-pyrifera_M_contig125557.5167.1 ID=prot_M-pyrifera_M_contig125557.5167.1|Name=mRNA_M-pyrifera_M_contig125557.5167.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MDERVRALAHRLGLANRIELRGPADESELPEIFAQAACLVLPSRVEGFGL
PAVEALRARLPLAIADVPALVEATPPDTPRFDPEDPAGCAAAVRTALARS
DAELDAGAAHAQRYSWDASAARWVALFRELS*
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mRNA from alignment at M-pyrifera_M_contig125557:3..404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125557.5167.1 ID=mRNA_M-pyrifera_M_contig125557.5167.1|Name=mRNA_M-pyrifera_M_contig125557.5167.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig125557:3..404+ (Macrocystis pyrifera P11B4 male)
GGCGACATGGACGAGCGCGTGCGCGCGCTCGCGCACCGCTTGGGGCTCGC AAACCGGATCGAGCTGCGTGGCCCCGCCGACGAGAGCGAGCTGCCCGAGA TCTTCGCCCAGGCGGCGTGCCTGGTGCTGCCCTCGCGCGTCGAAGGCTTC GGCCTGCCCGCGGTCGAGGCCCTGCGCGCGCGGCTGCCGCTGGCCATCGC CGACGTTCCGGCACTGGTCGAGGCGACGCCGCCCGACACGCCGCGCTTCG ACCCCGAGGATCCTGCGGGCTGCGCGGCCGCGGTGCGCACGGCCCTCGCG CGCTCGGACGCGGAGCTCGACGCCGGCGCGGCGCATGCCCAGCGCTACAG CTGGGACGCGAGCGCGGCGCGGTGGGTCGCGCTGTTCCGCGAGCTCAGCT GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125557:3..404+

>mRNA_M-pyrifera_M_contig125557.5167.1 ID=mRNA_M-pyrifera_M_contig125557.5167.1|Name=mRNA_M-pyrifera_M_contig125557.5167.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig125557:3..404+ (Macrocystis pyrifera P11B4 male)
ATGGACGAGCGCGTGCGCGCGCTCGCGCACCGCTTGGGGCTCGCAAACCG
GATCGAGCTGCGTGGCCCCGCCGACGAGAGCGAGCTGCCCGAGATCTTCG
CCCAGGCGGCGTGCCTGGTGCTGCCCTCGCGCGTCGAAGGCTTCGGCCTG
CCCGCGGTCGAGGCCCTGCGCGCGCGGCTGCCGCTGGCCATCGCCGACGT
TCCGGCACTGGTCGAGGCGACGCCGCCCGACACGCCGCGCTTCGACCCCG
AGGATCCTGCGGGCTGCGCGGCCGCGGTGCGCACGGCCCTCGCGCGCTCG
GACGCGGAGCTCGACGCCGGCGCGGCGCATGCCCAGCGCTACAGCTGGGA
CGCGAGCGCGGCGCGGTGGGTCGCGCTGTTCCGCGAGCTCAGCTGAATGG
ACGAGCGCGTGCGCGCGCTCGCGCACCGCTTGGGGCTCGCAAACCGGATC
GAGCTGCGTGGCCCCGCCGACGAGAGCGAGCTGCCCGAGATCTTCGCCCA
GGCGGCGTGCCTGGTGCTGCCCTCGCGCGTCGAAGGCTTCGGCCTGCCCG
CGGTCGAGGCCCTGCGCGCGCGGCTGCCGCTGGCCATCGCCGACGTTCCG
GCACTGGTCGAGGCGACGCCGCCCGACACGCCGCGCTTCGACCCCGAGGA
TCCTGCGGGCTGCGCGGCCGCGGTGCGCACGGCCCTCGCGCGCTCGGACG
CGGAGCTCGACGCCGGCGCGGCGCATGCCCAGCGCTACAGCTGGGACGCG
AGCGCGGCGCGGTGGGTCGCGCTGTTCCGCGAGCTCAGCTGA
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