mRNA_M-pyrifera_M_contig125533.5157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125533.5157.1
Unique NamemRNA_M-pyrifera_M_contig125533.5157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125533.5157.1 vs. uniprot
Match: UPI001A39DA44 (Phage major capsid protein n=2 Tax=gamma proteobacterium endosymbiont of Lamellibrachia anaximandri TaxID=1221604 RepID=UPI001A39DA44)

HSP 1 Score: 59.3 bits (142), Expect = 5.540e-8
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   67 SVGELMLGMISDSGSPGVREALNTGASSAGGVFIAPKVSARFLELISAKSVCMAAGCGIVQMESPYMRVPKQLTNPTPAWRKEGTNIA 330
            ++G ++ GM     +P +R AL+ G  +AGG  +   + A  ++ + AKSVC AAGC  V +++    V +  T+P  +WR E  ++A
Sbjct:  117 TLGGVLRGMAGAGMTPEIRNALSIGTDAAGGYTVPTALMAELIDALRAKSVCNAAGCQTVTLDTQQTNVARMDTDPVASWRAEAASVA 204
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BLAST of mRNA_M-pyrifera_M_contig125533.5157.1 vs. uniprot
Match: UPI002021F5C1 (phage major capsid protein n=1 Tax=Guyparkeria hydrothermalis TaxID=923 RepID=UPI002021F5C1)

HSP 1 Score: 54.7 bits (130), Expect = 2.340e-6
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   28 HGEQMASPDQPDYSV--------GELMLGMISDSGSPGVREALNTGASSAGGVFIAPKVSARFLELISAKSVCMAAGCGIVQMESPYMRVPKQLTNPTPAWRKEGTNIA 330
            H E+ AS    ++S         GE + GM+  S S  VR AL+ G  SAGGV +   V +R ++ + +K V   AG   + +E+    + +  ++PT +WR E   +A
Sbjct:  118 HSEKFASIQVGNHSATHAGKFGFGEFVRGMVGQSSSMDVRNALSEGTDSAGGVTVPQHVMSRLIDRMRSKLVTSRAGALSIPLETEKTTIARLASDPTASWRLENAAVA 226
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BLAST of mRNA_M-pyrifera_M_contig125533.5157.1 vs. uniprot
Match: A0A1E2UNV2_9GAMM (Uncharacterized protein n=2 Tax=Candidatus Thiodiazotropha endoloripes TaxID=1818881 RepID=A0A1E2UNV2_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 8.050e-6
Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   58 PDYSVGELMLGMISDSGSPGVREALNTGASSAGGVFIAPKVSARFLELISAKSVCMAAGCGIVQMESPYMRVPKQLTNPTPAWRKEGTNIA 330
            P  ++G ++  M     +  ++ AL+ GA  AGG  +   + A+ ++ + AKSVC AAGC  V +++    V +  T+P  AWR E + +A
Sbjct:  114 PGVTLGGILRAMAGADTTAVIQNALSIGADPAGGYTVPTALLAQLVDALRAKSVCNAAGCQTVVLDTKQTNVARLDTDPVAAWRAEQSLVA 204
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BLAST of mRNA_M-pyrifera_M_contig125533.5157.1 vs. uniprot
Match: A0A2T6NB45_9GAMM (Phage major capsid protein n=1 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2T6NB45_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-5
Identity = 29/96 (30.21%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:   43 ASPDQPDYSVGELMLGMISDSGSPGVREALNTGASSAGGVFIAPKVSARFLELISAKSVCMAAGCGIVQMESPYMRVPKQLTNPTPAWRKEGTNIA 330
            A    P  ++G ++  M     +P ++ AL+ G  +AGG  +   + A+ ++ + AKSVC AAGC  V + +    V +   +P  AWR E   +A
Sbjct:  109 APQPSPGVTLGGILRAMAGAGTTPVIQNALSIGTDTAGGYTVPTALLAQLIDALRAKSVCNAAGCQTVVLNTKETNVARLDADPIAAWRAEQALVA 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125533.5157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001A39DA445.540e-832.95Phage major capsid protein n=2 Tax=gamma proteobac... [more]
UPI002021F5C12.340e-631.19phage major capsid protein n=1 Tax=Guyparkeria hyd... [more]
A0A1E2UNV2_9GAMM8.050e-631.87Uncharacterized protein n=2 Tax=Candidatus Thiodia... [more]
A0A2T6NB45_9GAMM1.500e-530.21Phage major capsid protein n=1 Tax=gamma proteobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125533contigM-pyrifera_M_contig125533:185..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.8869364-CDS-M-pyrifera_M_contig125533:184..5141622815770.8869364-CDS-M-pyrifera_M_contig125533:184..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125533 185..514 +
1692277561.5428226-CDS-M-pyrifera_M_contig125533:184..5141692277561.5428226-CDS-M-pyrifera_M_contig125533:184..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125533 185..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125533.5157.1prot_M-pyrifera_M_contig125533.5157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125533 185..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125533.5157.1

>prot_M-pyrifera_M_contig125533.5157.1 ID=prot_M-pyrifera_M_contig125533.5157.1|Name=mRNA_M-pyrifera_M_contig125533.5157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
TGKRLHVYRHGEQMASPDQPDYSVGELMLGMISDSGSPGVREALNTGASS
AGGVFIAPKVSARFLELISAKSVCMAAGCGIVQMESPYMRVPKQLTNPTP
AWRKEGTNIA
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mRNA from alignment at M-pyrifera_M_contig125533:185..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125533.5157.1 ID=mRNA_M-pyrifera_M_contig125533.5157.1|Name=mRNA_M-pyrifera_M_contig125533.5157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig125533:185..514+ (Macrocystis pyrifera P11B4 male)
ACCGGTAAGCGTTTGCACGTTTATCGTCACGGCGAACAGATGGCTAGCCC
CGATCAACCGGACTACAGCGTCGGCGAACTGATGCTCGGGATGATTTCCG
ACAGTGGGTCTCCAGGGGTTCGCGAAGCATTGAACACGGGTGCGTCGTCC
GCCGGCGGTGTGTTCATCGCTCCCAAGGTAAGCGCCCGCTTCCTTGAATT
AATTTCAGCCAAGAGCGTTTGCATGGCCGCAGGCTGCGGTATCGTGCAGA
TGGAAAGCCCCTACATGCGGGTTCCGAAGCAGCTGACAAACCCGACTCCC
GCCTGGCGAAAGGAAGGGACCAACATCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125533:185..514+

>mRNA_M-pyrifera_M_contig125533.5157.1 ID=mRNA_M-pyrifera_M_contig125533.5157.1|Name=mRNA_M-pyrifera_M_contig125533.5157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig125533:185..514+ (Macrocystis pyrifera P11B4 male)
ACCGGTAAGCGTTTGCACGTTTATCGTCACGGCGAACAGATGGCTAGCCC
CGATCAACCGGACTACAGCGTCGGCGAACTGATGCTCGGGATGATTTCCG
ACAGTGGGTCTCCAGGGGTTCGCGAAGCATTGAACACGGGTGCGTCGTCC
GCCGGCGGTGTGTTCATCGCTCCCAAGGTAAGCGCCCGCTTCCTTGAATT
AATTTCAGCCAAGAGCGTTTGCATGGCCGCAGGCTGCGGTATCGTGCAGA
TGGAAAGCCCCTACATGCGGGTTCCGAAGCAGCTGACAAACCCGACTCCC
GCCTGGCGAAAGGAAGGGACCAACATCGCGACCGGTAAGCGTTTGCACGT
TTATCGTCACGGCGAACAGATGGCTAGCCCCGATCAACCGGACTACAGCG
TCGGCGAACTGATGCTCGGGATGATTTCCGACAGTGGGTCTCCAGGGGTT
CGCGAAGCATTGAACACGGGTGCGTCGTCCGCCGGCGGTGTGTTCATCGC
TCCCAAGGTAAGCGCCCGCTTCCTTGAATTAATTTCAGCCAAGAGCGTTT
GCATGGCCGCAGGCTGCGGTATCGTGCAGATGGAAAGCCCCTACATGCGG
GTTCCGAAGCAGCTGACAAACCCGACTCCCGCCTGGCGAAAGGAAGGGAC
CAACATCGCG
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