mRNA_M-pyrifera_M_contig125532.5156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125532.5156.1
Unique NamemRNA_M-pyrifera_M_contig125532.5156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: UPI001874520D (ankyrin repeat domain-containing protein 7-like n=1 Tax=Manis pentadactyla TaxID=143292 RepID=UPI001874520D)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-7
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 RNSLHQSPLHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSADPWLPNIYGLHALHLAALVHDPSTSTLPLILSAAASIDAETSSG 321
            R+  H + LHLA  +G  +++ + ++RK  ++N  D    TPL  AV C + +   +LL+HSADP + +IYG  ALH AA       +T+  +LS  A I+A    G
Sbjct:   42 RSPRHPTALHLACANGHAEVVTVLVQRK-CELNLCDNLERTPLIKAVQCQQEDCARILLDHSADPNVSDIYGNTALHYAAC--GECVTTVAQLLSHNADIEANNEEG 145          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A1B7Y0U2_COLHI (Calcium/calmodulin-dependent protein kinase type 1B n=3 Tax=Colletotrichum higginsianum TaxID=80884 RepID=A0A1B7Y0U2_COLHI)

HSP 1 Score: 57.0 bits (136), Expect = 3.300e-7
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSAD 192
            LHL+  SGQ   + L L+R+D  IN RD  G TPL  AV+ GR + VALLL H AD
Sbjct:  392 LHLSIASGQLDTLRLLLQRQDIAINCRDGSGFTPLQRAVMLGRTDMVALLLEHGAD 447          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A7K9EC94_BARMA (ANKR7 protein (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9EC94_BARMA)

HSP 1 Score: 51.2 bits (121), Expect = 7.540e-6
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   19 SPLHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSADPWLPNIYGLHALHLAALVHDPSTS 264
            +PLHLA  SG H  +  +L      ++  D +  +PL  A  C + + VA+LL H ADP LP+  G  ALH A L   P+TS
Sbjct:    1 TPLHLACASG-HVDVVTYLVENKCKLHLFDSENRSPLMKAGQCQQEKRVAVLLEHGADPNLPDADGNTALHYAVL--SPNTS 79          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A3N4JFJ0_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4JFJ0_9PEZI)

HSP 1 Score: 49.7 bits (117), Expect = 7.690e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLL 177
            LH+A R G+  +++L L R +TD+NARDL G TPL  A   GRHE +  LL
Sbjct:   11 LHMAVRRGREAVVKLLLERGETDLNARDLSGATPLELAAK-GRHEGIVGLL 60          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A168JY85_CORDF (Ankyrin repeat-containing domain protein n=1 Tax=Akanthomyces lecanii RCEF 1005 TaxID=1081108 RepID=A0A168JY85_CORDF)

HSP 1 Score: 52.8 bits (125), Expect = 1.030e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSAD 192
            LHLAA +GQH  M   L  K  ++NA D+ G+TPL  A   GR E V +LL H AD
Sbjct:  198 LHLAA-AGQHPAMVRLLAAKGANVNAADIDGVTPLMEAAFWGRPENVRILLQHGAD 252          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A179II87_CORDF (Uncharacterized protein n=1 Tax=Cordyceps confragosa TaxID=2714763 RepID=A0A179II87_CORDF)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSADPWLPNIY 213
            LHLAA +GQH  M   L  K  +++A DL G+TPL  A   GR E V +LL H AD  L  I+
Sbjct:  198 LHLAA-AGQHPAMVRLLASKGANVDAADLDGITPLMEAAFWGRPENVRILLRHGADRSLQCIH 259          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: F9X4X4_ZYMTI (PH domain-containing protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9X4X4_ZYMTI)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-5
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSA-DPWLPNIYGLHALHLA 237
            LHLA +  +  M+E  L ++DTD+NA+D  G TPLA A   GR   V +LL H+  +  + N  G  AL LA
Sbjct:  143 LHLAIQCAETSMIEYVLTQQDTDVNAKDKDGNTPLAVAASLGRLAVVKILLEHNEINDSIANYQGKTALDLA 214          
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Match: A0A1Y2U2U7_9PEZI (Uncharacterized protein n=2 Tax=unclassified Hypoxylon TaxID=2614581 RepID=A0A1Y2U2U7_9PEZI)

HSP 1 Score: 52.0 bits (123), Expect = 1.840e-5
Identity = 29/72 (40.28%), Postives = 36/72 (50.00%), Query Frame = 1
Query:   25 LHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCGRHEEVALLLNHSA-----DPWLPNIYGLHA 225
            LH A   G    + L L+R D ++N RD  G T L  AV+ GR +  A+LL H A     D W   I G HA
Sbjct:  330 LHFAVAGGHIDTLRLLLQRYDVNVNGRDNAGYTALQRAVMAGRTDMAAMLLEHGAVVDGDDSWTAEITGHHA 401          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125532.5156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001874520D1.840e-736.45ankyrin repeat domain-containing protein 7-like n=... [more]
A0A1B7Y0U2_COLHI3.300e-753.57Calcium/calmodulin-dependent protein kinase type 1... [more]
A0A7K9EC94_BARMA7.540e-640.24ANKR7 protein (Fragment) n=1 Tax=Baryphthengus mar... [more]
A0A3N4JFJ0_9PEZI7.690e-650.98Uncharacterized protein (Fragment) n=1 Tax=Choirom... [more]
A0A168JY85_CORDF1.030e-550.00Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
A0A179II87_CORDF1.400e-547.62Uncharacterized protein n=1 Tax=Cordyceps confrago... [more]
F9X4X4_ZYMTI1.490e-543.06PH domain-containing protein n=5 Tax=Zymoseptoria ... [more]
A0A1Y2U2U7_9PEZI1.840e-540.28Uncharacterized protein n=2 Tax=unclassified Hypox... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125532contigM-pyrifera_M_contig125532:20..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.855042-CDS-M-pyrifera_M_contig125532:19..3401622815770.855042-CDS-M-pyrifera_M_contig125532:19..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125532 20..340 +
1692277561.532453-CDS-M-pyrifera_M_contig125532:19..3401692277561.532453-CDS-M-pyrifera_M_contig125532:19..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125532 20..340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125532.5156.1prot_M-pyrifera_M_contig125532.5156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125532 20..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125532.5156.1

>prot_M-pyrifera_M_contig125532.5156.1 ID=prot_M-pyrifera_M_contig125532.5156.1|Name=mRNA_M-pyrifera_M_contig125532.5156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
RNSLHQSPLHLAARSGQHKMMELWLRRKDTDINARDLQGLTPLATAVLCG
RHEEVALLLNHSADPWLPNIYGLHALHLAALVHDPSTSTLPLILSAAASI
DAETSSG
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mRNA from alignment at M-pyrifera_M_contig125532:20..340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125532.5156.1 ID=mRNA_M-pyrifera_M_contig125532.5156.1|Name=mRNA_M-pyrifera_M_contig125532.5156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig125532:20..340+ (Macrocystis pyrifera P11B4 male)
CGGAACTCACTTCACCAATCCCCGCTCCACCTCGCTGCTCGGAGTGGTCA GCACAAGATGATGGAGTTGTGGCTTCGGCGAAAGGACACTGACATCAATG CCCGCGACCTCCAAGGTCTCACTCCGCTCGCCACAGCAGTACTCTGTGGC CGTCACGAGGAGGTAGCTCTCCTCCTCAACCACAGCGCAGACCCCTGGCT CCCCAACATCTACGGTCTCCACGCGCTCCACCTTGCTGCGCTCGTGCATG ACCCGTCCACCTCAACCCTCCCTCTCATTTTGAGCGCTGCCGCCAGTATC GACGCCGAAACGTCATCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125532:20..340+

>mRNA_M-pyrifera_M_contig125532.5156.1 ID=mRNA_M-pyrifera_M_contig125532.5156.1|Name=mRNA_M-pyrifera_M_contig125532.5156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig125532:20..340+ (Macrocystis pyrifera P11B4 male)
CGGAACTCACTTCACCAATCCCCGCTCCACCTCGCTGCTCGGAGTGGTCA
GCACAAGATGATGGAGTTGTGGCTTCGGCGAAAGGACACTGACATCAATG
CCCGCGACCTCCAAGGTCTCACTCCGCTCGCCACAGCAGTACTCTGTGGC
CGTCACGAGGAGGTAGCTCTCCTCCTCAACCACAGCGCAGACCCCTGGCT
CCCCAACATCTACGGTCTCCACGCGCTCCACCTTGCTGCGCTCGTGCATG
ACCCGTCCACCTCAACCCTCCCTCTCATTTTGAGCGCTGCCGCCAGTATC
GACGCCGAAACGTCATCGGGGCGGAACTCACTTCACCAATCCCCGCTCCA
CCTCGCTGCTCGGAGTGGTCAGCACAAGATGATGGAGTTGTGGCTTCGGC
GAAAGGACACTGACATCAATGCCCGCGACCTCCAAGGTCTCACTCCGCTC
GCCACAGCAGTACTCTGTGGCCGTCACGAGGAGGTAGCTCTCCTCCTCAA
CCACAGCGCAGACCCCTGGCTCCCCAACATCTACGGTCTCCACGCGCTCC
ACCTTGCTGCGCTCGTGCATGACCCGTCCACCTCAACCCTCCCTCTCATT
TTGAGCGCTGCCGCCAGTATCGACGCCGAAACGTCATCGGGG
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