mRNA_M-pyrifera_M_contig125487.5143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125487.5143.1
Unique NamemRNA_M-pyrifera_M_contig125487.5143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125487.5143.1 vs. uniprot
Match: S7Z5A1_PENO1 (Rav1p_C domain-containing protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S7Z5A1_PENO1)

HSP 1 Score: 70.5 bits (171), Expect = 2.970e-11
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 1 
Query:    1 AYTTEDSVVILTQQFATQQVLALAPGEKAVALAWNEATGALAVAIGTFAVLFTCEISHGK-LQWTRGKAVNAE---EAVECLCWSEARNELLICGESIALWFIPFSMLSENPILKWRTPGVSPISFCTFSPDGKFFATAGANDRYPKVWRPL 444
            AY +  ++VIL+      Q + +   +K  A+A++EA+G +AV  G    ++      G+ L+W+      A+   E++  L W    NELL     +ALW     ML++ P L W+    +P+    FSPDG    T G  DR  KVWR L
Sbjct:   28 AYISGHALVILSGPQTLLQTIYVDDTDKLEAVAFDEASGKIAVCGGPDIFVYQPYGIKGETLKWSLASTFRAQDEKESIHTLSWGSP-NELLAGNSRLALW-----MLNDTPRLVWKRKLATPVKLAQFSPDGALVVTVGQYDRLVKVWRRL 173
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BLAST of mRNA_M-pyrifera_M_contig125487.5143.1 vs. uniprot
Match: A0A0F7VF81_PENBI (Putative WD repeat protein n=3 Tax=Penicillium TaxID=5073 RepID=A0A0F7VF81_PENBI)

HSP 1 Score: 70.1 bits (170), Expect = 4.050e-11
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 1 
Query:    1 AYTTEDSVVILTQQFATQQVLALAPGEKAVALAWNEATGALAVAIGTFAVLFTCEISHGK-LQWTRG---KAVNAEEAVECLCWSEARNELLICGESIALWFIPFSMLSENPILKWRTPGVSPISFCTFSPDGKFFATAGANDRYPKVWRPL 444
            AY +  ++VIL       Q + +   EK  A+A++EA+G +AV  G    ++      G+ L+W+     +A + +E++  + W    NELL+    +ALW     ML++ P L W+     P+ F  FSPD     T G  DR  KVWR L
Sbjct:   28 AYISGHALVILGGPQTLLQTIYVDDTEKLEAVAFDEASGKIAVCGGPDIFVYQPYGIQGETLKWSLACTFRANDDDESIHTVSWGSP-NELLVGNSRLALW-----MLNDTPRLVWKKKLAHPVKFAQFSPDAALVVTVGEYDRLVKVWRRL 173
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BLAST of mRNA_M-pyrifera_M_contig125487.5143.1 vs. uniprot
Match: A0A1V6PP00_PENDC (Rav1p_C domain-containing protein n=1 Tax=Penicillium decumbens TaxID=69771 RepID=A0A1V6PP00_PENDC)

HSP 1 Score: 68.6 bits (166), Expect = 1.390e-10
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 1 
Query:    1 AYTTEDSVVILTQQFATQQVLALAPGEKAVALAWNEATGALAVAIGTFAVLFTCEISHGK-LQWT---RGKAVNAEEAVECLCWSEARNELLICGESIALWFIPFSMLSENPILKWRTPGVSPISFCTFSPDGKFFATAGANDRYPKVWRPL 444
            AY +  ++VIL       Q + +   E   A+A++EA+G +AV  G    ++      G+ L+W+     +A + +E +  L W    NELL+    +ALWFI      + P L W+    SP+ F  FSPD     T G  DR  KVWR L
Sbjct:   28 AYISGHALVILGGPQTLLQTVYVDDTENLEAVAFDEASGKIAVCGGPDIFVYQPYGIQGETLKWSLVHTFRADDDDEPIYTLSWGST-NELLVGNSRLALWFI-----YDEPRLVWKQKLASPVQFAQFSPDSALIVTVGHYDRLAKVWRRL 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125487.5143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
S7Z5A1_PENO12.970e-1132.24Rav1p_C domain-containing protein n=1 Tax=Penicill... [more]
A0A0F7VF81_PENBI4.050e-1132.24Putative WD repeat protein n=3 Tax=Penicillium Tax... [more]
A0A1V6PP00_PENDC1.390e-1032.89Rav1p_C domain-containing protein n=1 Tax=Penicill... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125487contigM-pyrifera_M_contig125487:7..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog109760.SPPG_02579T0
Preferred nameRAV1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006873,GO:0006885,GO:0007034,GO:0007035,GO:0008150,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010043,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016482,GO:0019725,GO:0019898,GO:0022607,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0034622,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043254,GO:0043291,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045022,GO:0045324,GO:0045851,GO:0046907,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051592,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0065003,GO:0065007,GO:0065008,GO:0070070,GO:0070071,GO:0070072,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071294,GO:0071840,GO:0097708,GO:0098588,GO:0098771,GO:0098805,GO:0098927
EggNOG free text desc.Wd repeat protein
EggNOG OGs38E6B@33154,3NXZY@4751,KOG1064@1,KOG1064@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons2
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.2375262-CDS-M-pyrifera_M_contig125487:6..3181622815770.2375262-CDS-M-pyrifera_M_contig125487:6..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125487 7..318 +
1692277561.2376976-CDS-M-pyrifera_M_contig125487:6..3181692277561.2376976-CDS-M-pyrifera_M_contig125487:6..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125487 7..318 +
1622815770.2507527-CDS-M-pyrifera_M_contig125487:366..5071622815770.2507527-CDS-M-pyrifera_M_contig125487:366..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125487 367..507 +
1692277561.2487533-CDS-M-pyrifera_M_contig125487:366..5071692277561.2487533-CDS-M-pyrifera_M_contig125487:366..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125487 367..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125487.5143.1prot_M-pyrifera_M_contig125487.5143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125487 7..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125487.5143.1

>prot_M-pyrifera_M_contig125487.5143.1 ID=prot_M-pyrifera_M_contig125487.5143.1|Name=mRNA_M-pyrifera_M_contig125487.5143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
AYTTEDSVVILTQQFATQQVLALAPGEKAVALAWNEATGALAVAIGTFAV
LFTCEISHGKLQWTRGKAVNAEEAVECLCWSEARNELLICGESIALWFIP
FSMLSENPILKWRTPGVSPISFCTFSPDGKFFATAGANDRYPKVWRPLFT
A
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mRNA from alignment at M-pyrifera_M_contig125487:7..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125487.5143.1 ID=mRNA_M-pyrifera_M_contig125487.5143.1|Name=mRNA_M-pyrifera_M_contig125487.5143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125487:7..507+ (Macrocystis pyrifera P11B4 male)
GCATACACAACAGAAGACTCGGTTGTGATTCTGACCCAGCAGTTTGCGAC
ACAGCAGGTGCTGGCCTTGGCCCCAGGGGAGAAAGCAGTGGCCCTTGCAT
GGAATGAGGCGACTGGCGCACTTGCGGTGGCGATTGGAACCTTTGCAGTA
CTCTTCACATGTGAGATCAGCCATGGAAAGCTGCAGTGGACGAGGGGAAA
GGCTGTGAATGCAGAGGAGGCGGTGGAATGTCTCTGTTGGTCAGAGGCGA
GGAATGAGCTCTTGATCTGTGGTGAGAGCATTGCCCTTTGGTTCATTCCC
TTCTCTATGCTTGTACCAAGCTCTCCACTTGTCAAGAAGGAGGTGAGGGT
TGGGAAAGAGAGCGAGAATCCCATTCTGAAGTGGAGGACGCCAGGCGTCT
CCCCCATCTCCTTCTGTACTTTCTCACCTGATGGAAAGTTCTTTGCCACC
GCAGGAGCGAACGATAGATATCCTAAGGTTTGGAGGCCGCTCTTCACTGC
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125487:7..507+

>mRNA_M-pyrifera_M_contig125487.5143.1 ID=mRNA_M-pyrifera_M_contig125487.5143.1|Name=mRNA_M-pyrifera_M_contig125487.5143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig125487:7..507+ (Macrocystis pyrifera P11B4 male)
GCATACACAACAGAAGACTCGGTTGTGATTCTGACCCAGCAGTTTGCGAC
ACAGCAGGTGCTGGCCTTGGCCCCAGGGGAGAAAGCAGTGGCCCTTGCAT
GGAATGAGGCGACTGGCGCACTTGCGGTGGCGATTGGAACCTTTGCAGTA
CTCTTCACATGTGAGATCAGCCATGGAAAGCTGCAGTGGACGAGGGGAAA
GGCTGTGAATGCAGAGGAGGCGGTGGAATGTCTCTGTTGGTCAGAGGCGA
GGAATGAGCTCTTGATCTGTGGTGAGAGCATTGCCCTTTGGTTCATTCCC
TTCTCTATGCTTGCATACACAACAGAAGACTCGGTTGTGATTCTGACCCA
GCAGTTTGCGACACAGCAGGTGCTGGCCTTGGCCCCAGGGGAGAAAGCAG
TGGCCCTTGCATGGAATGAGGCGACTGGCGCACTTGCGGTGGCGATTGGA
ACCTTTGCAGTACTCTTCACATGTGAGATCAGCCATGGAAAGCTGCAGTG
GACGAGGGGAAAGGCTGTGAATGCAGAGGAGGCGGTGGAATGTCTCTGTT
GGTCAGAGGCGAGGAATGAGCTCTTGATCTGTGGTGAGAGCATTGCCCTT
TGGTTCATTCCCTTCTCTATGCTTAGCGAGAATCCCATTCTGAAGTGGAG
GACGCCAGGCGTCTCCCCCATCTCCTTCTGTACTTTCTCACCTGATGGAA
AGTTCTTTGCCACCGCAGGAGCGAACGATAGATATCCTAAGGTTTGGAGG
CCGCTCTTCACTGCCAGCGAGAATCCCATTCTGAAGTGGAGGACGCCAGG
CGTCTCCCCCATCTCCTTCTGTACTTTCTCACCTGATGGAAAGTTCTTTG
CCACCGCAGGAGCGAACGATAGATATCCTAAGGTTTGGAGGCCGCTCTTC
ACTGCC
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