prot_M-pyrifera_M_contig12548.5142.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12548.5142.1
Unique Nameprot_M-pyrifera_M_contig12548.5142.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length578
Homology
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.260e-13
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0 
Query:  534 VDRRALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQG 578
            VDR ALPEALAGTLDHIVGQLDMLTRTVGVLE+RLTL EDR+QQG
Sbjct:  624 VDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQG 668
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.190e-12
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 
Query:  534 VDRRALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQG 578
            VDR ALPEALAGTLDHIVGQLDMLTRTVG+LE+RLTL EDR+QQG
Sbjct:  606 VDRGALPEALAGTLDHIVGQLDMLTRTVGLLEQRLTLTEDRLQQG 650
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A835Z3N7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-8
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0 
Query:  532 GGVDRRALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            GGV R  LP  LAGTLDHIVGQLD++TRT+ +LE+RLTLAED+I++
Sbjct:  444 GGVSRDELPAVLAGTLDHIVGQLDIVTRTLAILEQRLTLAEDKIER 489
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A6J0DC80_PERMB (POC1 centriolar protein homolog A-like n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0DC80_PERMB)

HSP 1 Score: 58.5 bits (140), Expect = 3.300e-7
Identity = 25/40 (62.50%), Postives = 36/40 (90.00%), Query Frame = 0 
Query:  538 ALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            ++P+ L  TL+HIVGQLD+LT+TV +LE+RLTLAED+++Q
Sbjct:   36 SVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLAEDKLKQ 75
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A061I7B3_CRIGR (Putative POC1 centriolar protein (Fragment) n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061I7B3_CRIGR)

HSP 1 Score: 60.5 bits (145), Expect = 4.530e-7
Identity = 26/43 (60.47%), Postives = 38/43 (88.37%), Query Frame = 0 
Query:  535 DRRALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            +R ++P+ L  TL+HIVGQLD+LT+TV +LE+RLTLAED+++Q
Sbjct:  113 ERVSMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLAEDKLKQ 155
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: UPI001659BF5B (POC1 centriolar protein homolog A-like isoform X4 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659BF5B)

HSP 1 Score: 57.4 bits (137), Expect = 7.390e-7
Identity = 24/40 (60.00%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  538 ALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            ++P+ L  TL+HIVGQLD+LT+TV +LE+RLTL ED+++Q
Sbjct:   31 SMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 70
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A7S2CER6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CER6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.710e-7
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 0 
Query:  532 GGVDRRALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRI 575
            G + R  LPE L  TLDHIVGQLD++TRT+ +LE+R++L EDR+
Sbjct:   62 GVISRDMLPEVLTATLDHIVGQLDVVTRTMSILEQRVSLTEDRL 105
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: UPI0007B7EE92 (POC1 centriolar protein homolog A-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B7EE92)

HSP 1 Score: 57.0 bits (136), Expect = 8.630e-7
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  538 ALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            ++P ALA TL HIVGQLD+LT+TV +LE+RLTL ED++++
Sbjct:   27 SVPAALASTLQHIVGQLDVLTQTVAILEQRLTLTEDKLKE 66
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: A0A7J7UDW8_MYOMY (POC1 centriolar protein A n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7UDW8_MYOMY)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-6
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 0 
Query:  540 PEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            P+AL  TL+HIVGQLD+LT+TV +LE+RLTL ED+++Q
Sbjct:   29 PQALTSTLEHIVGQLDVLTQTVCILEQRLTLTEDKLKQ 66
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BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Match: UPI001659089B (POC1 centriolar protein homolog A-like isoform X3 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659089B)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-6
Identity = 24/40 (60.00%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  538 ALPEALAGTLDHIVGQLDMLTRTVGVLEKRLTLAEDRIQQ 577
            ++P+ L  TL+HIVGQLD+LT+TV +LE+RLTL ED+++Q
Sbjct:   70 SMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12548.5142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH2_ECTSI5.260e-1391.11Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A6H5KSG1_9PHAE1.190e-1288.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3N7_9STRA1.600e-869.57WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6J0DC80_PERMB3.300e-762.50POC1 centriolar protein homolog A-like n=1 Tax=Per... [more]
A0A061I7B3_CRIGR4.530e-760.47Putative POC1 centriolar protein (Fragment) n=1 Ta... [more]
UPI001659BF5B7.390e-760.00POC1 centriolar protein homolog A-like isoform X4 ... [more]
A0A7S2CER6_9STRA7.710e-759.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0007B7EE928.630e-762.50POC1 centriolar protein homolog A-like n=1 Tax=Sin... [more]
A0A7J7UDW8_MYOMY1.240e-665.79POC1 centriolar protein A n=1 Tax=Myotis myotis Ta... [more]
UPI001659089B1.970e-660.00POC1 centriolar protein homolog A-like isoform X3 ... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 76..90
score: 38.76
coord: 34..48
score: 34.16
coord: 118..132
score: 38.1
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 50..89
e-value: 1.4E-10
score: 51.1
coord: 92..131
e-value: 4.1E-9
score: 46.3
coord: 8..47
e-value: 9.1E-11
score: 51.8
coord: 134..173
e-value: 6.3E-10
score: 49.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 94..131
e-value: 5.5E-7
score: 30.2
coord: 11..47
e-value: 1.3E-9
score: 38.5
coord: 52..89
e-value: 4.6E-7
score: 30.4
coord: 135..172
e-value: 5.5E-7
score: 30.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 15..56
score: 16.19
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 141..172
score: 12.514
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 99..140
score: 17.226
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 57..98
score: 13.717
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 92..181
e-value: 6.0E-28
score: 100.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..91
e-value: 3.1E-31
score: 110.3
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 2..178
NoneNo IPR availablePANTHERPTHR44019FAMILY NOT NAMEDcoord: 2..178
coord: 536..577
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 536..577
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 76..90
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 118..132
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 34..48
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..182
score: 49.197
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12548contigM-pyrifera_M_contig12548:102..8882 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12548.5142.1mRNA_M-pyrifera_M_contig12548.5142.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12548 102..8882 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12548.5142.1 ID=prot_M-pyrifera_M_contig12548.5142.1|Name=mRNA_M-pyrifera_M_contig12548.5142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=578bp
LQVWSLPSQKFVCTLTGHNNWVRCATFSPDSRLATSCGDDKTVRLWDVQT
QDCLHSFFDHDGSVGQARFHPDGTCLAACSTDRTIKVWDSRSHQLLQHYP
AHDGEVTAISFHESGNFLLSSSTDASLKVWDLREGRLLYTLKGHTGAVTA
CAFSADGTRFASGGVDGVVMSWRSHLDNRLGGGGGEGSGGGSPGMSSSAA
VLLDEKMEAMGVGGRAGRGAGKGMRAGARVGGGAGVGAGVRAGTGRRTAL
GVRTMNARTSSGGGGGGGGVVKRREASMGEGRGVGESGGSGGGASCLSFV
EPTPPPPPPPPQPTPTPAAPPPPPPPPRPTRRPRPAXXXXKKKNGASGKK
RTTFYLHPNPFPRRFGRSEHQQQQQHFAVEDMEVAAEVDERGGHLSERGG
NAAGGAGGATAAAAATARRAAGSRTGWDAVGSVDYGGEWRAERSAADGNA
TAAAAAAAAAAAAATGASVGNGVGGDMAATLADEGFGYGVLSGMGAGAEA
PGAIGEGWTRRWGKGGAEGGRAGAGSGAGGAGGVDRRALPEALAGTLDHI
VGQLDMLTRTVGVLEKRLTLAEDRIQQG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf