mRNA_M-pyrifera_M_contig125468.5137.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125468.5137.1
Unique NamemRNA_M-pyrifera_M_contig125468.5137.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A7C6A6C9_9BACT (Hydrogenase formation protein HypD n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C6A6C9_9BACT)

HSP 1 Score: 102 bits (254), Expect = 8.000e-23
Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFME-SGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQHRHS 498
            I CSF ++L    SQ S LL AK+ GAD+R++Y+  DA+ LA+ +P++++I  A GFE      A  +      G +N +VLV H          L++  G  QGL+ P      +G   Y  L  +H++PI++ G+EP+DILQ LL+LV Q+    AE+  Q+R S
Sbjct:   85 IFCSFGDMLRVPGSQCS-LLEAKARGADVRVVYSPLDALKLARANPTREVILFAVGFETTAPAAAMAVWQAAREGLSNFSVLVAHVLVPPAIEAILSSPDGRIQGLLAPGHVCTVTGYQPYEELARRHRVPIVVTGFEPLDILQGLLMLVNQLEEGRAEVENQYRRS 250          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A3N5LFV3_9BACT (Hydrogenase formation protein HypD n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5LFV3_9BACT)

HSP 1 Score: 100 bits (250), Expect = 2.780e-22
Identity = 60/167 (35.93%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFME-SGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQHRHS 498
            I CSF ++L +    + DLL+AK+AGAD+RI+Y+  DAV LAK HP KQ+++LA GFE      A  ++     G +N  VLV H          L A +    G +         G  +Y  +  Q+++PI++ G+EP+DILQ + + V+Q+    AE+  Q+  S
Sbjct:   85 IFCSFGDML-RVPGSSGDLLSAKAAGADVRIVYSPLDAVKLAKSHPDKQVVFLAVGFETTAPANALAVEQASRMGLDNFTVLVSHVLVPPAIEAILQAPENQVNGFLAAGHVCAVMGCEEYEPIAAQYRVPIVVTGFEPLDILQGIYMCVKQLEEGRAEVENQYARS 250          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A1J5S0V0_9ZZZZ (Hydrogenase expression/formation protein HypD n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5S0V0_9ZZZZ)

HSP 1 Score: 99.8 bits (247), Expect = 7.920e-22
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFMES-GIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQ 486
            I CS+ + L    S    L+ AK+ G DIRI+Y+  DA+ LA+ +P +++++LA GFE     TA  ++L E+ G  N +VL  H      A   + +      G + P       G A Y      ++ P++IAG+EP+D+LQS+L+LVRQVN  +A +  Q
Sbjct:   86 ILCSYADTLRVPASGQLSLIKAKAQGGDIRIVYSTADALQLARENPGREVVFLAIGFETTTPPTAVAVKLAEAEGLKNFSVLCNH-VLTPAAMHAILSGGAELDGFVGPAHVSAVIGAAPYEVFASDYRKPVVIAGFEPLDVLQSILMLVRQVNAGAARVENQ 247          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A850S6H8_9PROT (Hydrogenase maturation factor n=1 Tax=Mariprofundus sp. NF TaxID=2608716 RepID=A0A850S6H8_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-21
Identity = 54/164 (32.93%), Postives = 93/164 (56.71%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFMES-GIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQH 489
            I C++ +++     +   L  AK+ GADIR++Y++ D + +A+  P +Q+++ A GFE     TA  +Q+ E+ G +N +V   H          LA+ + +  G++ P       G + Y A    H+IPI+IAG+EP+D++QS L+LVRQ+N    E+  Q+
Sbjct:   87 ILCTYADLMRVPAGKRDSLHKAKARGADIRMVYSVSDVLAIARDSPEQQVVFFAIGFETTTPPTAVAIQIAEAEGLSNFSVYCNHVQTPPAMEHLLASGEAHINGILGPSHVSTIIGSSAYAACCSHHQIPIVIAGFEPLDVIQSTLMLVRQINEERFEVENQY 250          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A2V9VSC5_9BACT (Hydrogenase formation protein HypD n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9VSC5_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 4.000e-21
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   49 SDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFME-SGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQH 489
            SDLL AK+ GADIRI Y+  +AV +A  HP +++++LA GFE      A    L +  G +N ++LV H          L + +   QG + P       G  +Y AL   +++PI++ G+EP+DILQS+L+LV+Q+    A L  Q+
Sbjct:  100 SDLLRAKAHGADIRIAYSPTEAVKIATRHPERKVVFLAIGFETTAPANAMAAYLAKQQGLDNFSMLVSHVLVPPAIRALLTSLENRVQGFIAPGHVCTVMGCEEYEALARDYRVPIVVGGFEPVDILQSVLMLVKQLESGEARLENQY 247          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A6P1AJN9_9CYAN (Hydrogenase formation protein HypD n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P1AJN9_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 4.040e-21
Identity = 53/167 (31.74%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFME-SGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQHRHS 498
            I CSF ++L    S ++DLL  K+ G D+RI+Y+  D + +A+ +P K++++ A GFE     TA  +   +  G  N ++LV H          L++ +   QG +         G  +Y A+  Q++IPI++ G+EP+DILQ + L ++Q+  + AE++ Q+  S
Sbjct:   85 IFCSFGDMLRVPGSTSTDLLTVKANGGDVRIVYSPLDTLKIAQENPEKEVVFFAVGFETTAPATAMAVYQAKQQGITNFSMLVSHVLVPPAMAAILSSPQNQVQGFLAAGHVCTVMGYEEYQAIAAQYQIPIIVTGFEPVDILQGVYLCLQQLEQNQAEVVNQYSRS 251          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A6N7B7D2_9PROT (Hydrogenase maturation factor n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A6N7B7D2_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 4.410e-21
Identity = 58/161 (36.02%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNS--QGLMLPVDFMES-GIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAE 474
            I CS+ + L    S+   LL AK+ GAD+R++Y+  DAV +A  +P++Q+++ A GFE     TA  ++  ++SG  N +VL  H      A E +    G    QGL+ P       G   Y ++  + ++PI+I+G+EP+D+LQ++L+L+RQVN   AE
Sbjct:   87 ILCSYGDCLRVPASEQMSLLKAKARGADVRMVYSALDAVKIATQNPTRQVVFFAIGFETTTPPTASVIKQAQASGLKNFSVLCNHVLTLP-AMEAILTQPGGVPLQGLVGPAHVSTVIGSQPYQSITSRFRMPIVISGFEPLDLLQAILMLLRQVNEGRAE 246          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: UPI00036373CE (hydrogenase formation protein HypD n=1 Tax=Uliginosibacterium gangwonense TaxID=392736 RepID=UPI00036373CE)

HSP 1 Score: 97.4 bits (241), Expect = 5.930e-21
Identity = 58/160 (36.25%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNS-QGLMLPVDFMES-GIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAE 474
            I CS+ + L    S A  LL AKS GADIR++Y+  DA+ +A+ +P++++++LA GFE     TA  ++  ++ G NN ++L  H          LAA  G +  G + P       G A Y     Q+K P++IAG+EP+D++Q++ +LV Q+N   AE
Sbjct:   87 ILCSYGDTLRVPASNALSLLKAKSRGADIRMVYSTLDALQVARDNPTREVVFLAIGFETTTPPTAVAIKTAQAQGLNNFSILCNHVLTPAAMHAILAAPNGVALDGFVGPAHVSTVIGSAPYEPFPAQYKKPVVIAGFEPLDVMQAIHMLVLQINEGRAE 246          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A1G1P6A4_9BACT (Hydrogenase formation protein HypD n=1 Tax=Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_68_15 TaxID=1801861 RepID=A0A1G1P6A4_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.520e-20
Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFME-SGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQHRHS 498
            I CSF ++L +    A DLLA K+ GAD+RI+Y+  DA+ +A+  P +Q+++ A GFE     TA  +      G  N ++LV H          LA+ +   QG +         G  +Y  +   +++PI++ G+EP+DILQ +L+ VRQ+    AE+  Q+  S
Sbjct:   85 IFCSFGDML-RVPGAAGDLLAVKARGADVRIVYSPLDALRIARAEPDRQVVFFAVGFETTAPATAMAVSQAAQQGIENFSLLVSHMVVPPAMEAILASPENRVQGFLAAGHVCTVMGYTEYEPIARTYRVPIVVTGFEPLDILQGVLMCVRQLERGRAEVENQYTRS 250          
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Match: A0A850S0J1_9PROT (Hydrogenase maturation factor n=1 Tax=Mariprofundus sp. KV TaxID=2608715 RepID=A0A850S0J1_9PROT)

HSP 1 Score: 96.3 bits (238), Expect = 1.580e-20
Identity = 54/164 (32.93%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    1 ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQIIYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANKGNSQGLMLPVDFMES-GIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVRQVNLHSAELIEQH 489
            I C++ +++     +   L  AK+ GADIR++Y++ DA+ +A+ +P +Q+++ A GFE     TA  +Q+ ++ G  N  V   H          LA+ + +  G++ P       G   Y      H IPI+IAG+EP+D++QS LLLVRQ+N    E+  Q+
Sbjct:   87 ILCTYADLMRVPAGKRDSLHRAKARGADIRMVYSVNDALAIARNNPEQQVVFFAIGFETTTPPTAVAIQIAQAEGLKNFLVYCNHVQTPPAMSHLLASGEVSINGILGPSHVSTIIGSDAYADCCNNHHIPIVIAGFEPLDVMQSTLLLVRQINAGRCEVENQY 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125468.5137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C6A6C9_9BACT8.000e-2337.72Hydrogenase formation protein HypD n=1 Tax=Candida... [more]
A0A3N5LFV3_9BACT2.780e-2235.93Hydrogenase formation protein HypD n=1 Tax=Acidoba... [more]
A0A1J5S0V0_9ZZZZ7.920e-2235.58Hydrogenase expression/formation protein HypD n=1 ... [more]
A0A850S6H8_9PROT1.600e-2132.93Hydrogenase maturation factor n=1 Tax=Mariprofundu... [more]
A0A2V9VSC5_9BACT4.000e-2137.16Hydrogenase formation protein HypD n=1 Tax=Acidoba... [more]
A0A6P1AJN9_9CYAN4.040e-2131.74Hydrogenase formation protein HypD n=2 Tax=Oscilla... [more]
A0A6N7B7D2_9PROT4.410e-2136.02Hydrogenase maturation factor n=1 Tax=Gallionellac... [more]
UPI00036373CE5.930e-2136.25hydrogenase formation protein HypD n=1 Tax=Uligino... [more]
A0A1G1P6A4_9BACT1.520e-2033.53Hydrogenase formation protein HypD n=1 Tax=Omnitro... [more]
A0A850S0J1_9PROT1.580e-2032.93Hydrogenase maturation factor n=1 Tax=Mariprofundu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125468contigM-pyrifera_M_contig125468:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.8
Seed ortholog evalue5e-18
Seed eggNOG ortholog1123487.KB892837_gene4016
Preferred namehypD
KEGG koko:K04654
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the HypD family
EggNOG OGs1MU1F@1224,2KVMG@206389,2VHKM@28216,COG0409@1,COG0409@2
COG Functional cat.O
Best tax levelRhodocyclales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.9030242-CDS-M-pyrifera_M_contig125468:1..4991622815769.9030242-CDS-M-pyrifera_M_contig125468:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125468 2..499 +
1692277561.071025-CDS-M-pyrifera_M_contig125468:1..4991692277561.071025-CDS-M-pyrifera_M_contig125468:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125468 2..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125468.5137.1prot_M-pyrifera_M_contig125468.5137.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125468 2..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125468.5137.1

>prot_M-pyrifera_M_contig125468.5137.1 ID=prot_M-pyrifera_M_contig125468.5137.1|Name=mRNA_M-pyrifera_M_contig125468.5137.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
ICCSFPEILVQNTSQASDLLAAKSAGADIRIIYNIEDAVNLAKLHPSKQI
IYLATGFEGEMVETAKCLQLLESSGRNNLAVLVQHRTAFNVACEYLAANK
GNSQGLMLPVDFMESGIAQYHALQMQHKIPILIAGYEPIDILQSLLLLVR
QVNLHSAELIEQHRHS
back to top

mRNA from alignment at M-pyrifera_M_contig125468:2..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125468.5137.1 ID=mRNA_M-pyrifera_M_contig125468.5137.1|Name=mRNA_M-pyrifera_M_contig125468.5137.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig125468:2..499+ (Macrocystis pyrifera P11B4 male)
ATTTGTTGCAGTTTCCCTGAAATCTTAGTGCAAAATACGAGTCAAGCAAG CGATCTGTTAGCTGCAAAATCTGCGGGTGCTGATATCCGAATTATCTACA ATATTGAGGATGCAGTAAACCTTGCCAAGCTCCATCCATCCAAACAAATT ATTTATTTGGCAACCGGCTTTGAAGGTGAAATGGTAGAGACAGCAAAATG TCTGCAGCTATTGGAAAGTTCTGGCCGAAACAATTTAGCTGTGCTTGTAC AGCATCGCACTGCATTTAACGTTGCGTGTGAATATTTAGCAGCAAATAAA GGAAACTCGCAAGGGTTGATGTTACCGGTTGATTTTATGGAAAGTGGCAT AGCCCAATATCACGCGTTACAAATGCAGCATAAAATACCAATTCTTATTG CAGGCTATGAGCCTATCGATATTTTGCAATCACTCTTGCTGCTGGTGCGC CAAGTGAATTTACACAGCGCAGAATTAATTGAGCAACATCGACATAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125468:2..499+

>mRNA_M-pyrifera_M_contig125468.5137.1 ID=mRNA_M-pyrifera_M_contig125468.5137.1|Name=mRNA_M-pyrifera_M_contig125468.5137.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig125468:2..499+ (Macrocystis pyrifera P11B4 male)
ATTTGTTGCAGTTTCCCTGAAATCTTAGTGCAAAATACGAGTCAAGCAAG
CGATCTGTTAGCTGCAAAATCTGCGGGTGCTGATATCCGAATTATCTACA
ATATTGAGGATGCAGTAAACCTTGCCAAGCTCCATCCATCCAAACAAATT
ATTTATTTGGCAACCGGCTTTGAAGGTGAAATGGTAGAGACAGCAAAATG
TCTGCAGCTATTGGAAAGTTCTGGCCGAAACAATTTAGCTGTGCTTGTAC
AGCATCGCACTGCATTTAACGTTGCGTGTGAATATTTAGCAGCAAATAAA
GGAAACTCGCAAGGGTTGATGTTACCGGTTGATTTTATGGAAAGTGGCAT
AGCCCAATATCACGCGTTACAAATGCAGCATAAAATACCAATTCTTATTG
CAGGCTATGAGCCTATCGATATTTTGCAATCACTCTTGCTGCTGGTGCGC
CAAGTGAATTTACACAGCGCAGAATTAATTGAGCAACATCGACATAGTAT
TTGTTGCAGTTTCCCTGAAATCTTAGTGCAAAATACGAGTCAAGCAAGCG
ATCTGTTAGCTGCAAAATCTGCGGGTGCTGATATCCGAATTATCTACAAT
ATTGAGGATGCAGTAAACCTTGCCAAGCTCCATCCATCCAAACAAATTAT
TTATTTGGCAACCGGCTTTGAAGGTGAAATGGTAGAGACAGCAAAATGTC
TGCAGCTATTGGAAAGTTCTGGCCGAAACAATTTAGCTGTGCTTGTACAG
CATCGCACTGCATTTAACGTTGCGTGTGAATATTTAGCAGCAAATAAAGG
AAACTCGCAAGGGTTGATGTTACCGGTTGATTTTATGGAAAGTGGCATAG
CCCAATATCACGCGTTACAAATGCAGCATAAAATACCAATTCTTATTGCA
GGCTATGAGCCTATCGATATTTTGCAATCACTCTTGCTGCTGGTGCGCCA
AGTGAATTTACACAGCGCAGAATTAATTGAGCAACATCGACATAGT
back to top