mRNA_M-pyrifera_M_contig12537.5131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12537.5131.1
Unique NamemRNA_M-pyrifera_M_contig12537.5131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.990e-34
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGNSCKHQGYAEFNPPSWP SCAP KADWINEVVGQCGDGDAYPEEFWNCADI I+S
Sbjct:  247 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITS 303
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.460e-32
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGNSCKHQGYAEFNPPSWP SCAP KADWINE VGQCGDGDAYPEEFWNCAD+ I+S
Sbjct:  244 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITS 300
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 8.330e-32
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQ-CGDGDAYPEEFWNCADIEISS 207
            TGNSCKHQGYAEFNPPSWP SCAP KADWINE+VGQ CGDGDAYPEEFWNCAD+ I+S
Sbjct:  195 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITS 252
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.310e-31
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGNSCKH+GYAEFNP SWP SCAP KADWINEVVGQCGDGDAYPEEFWNCADI I+S
Sbjct:  251 TGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITS 307
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.060e-31
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   43 NSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            NSCKHQGYAEFNPPSWPGSCAP KADWI E VGQCGDGDAYPEEFWNCAD+ I+S
Sbjct:  215 NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITS 269
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.440e-31
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGNSCKHQGYAEFNP SWP SCAP KADWINEVVG CGDGDAYPEEFWNCADI I+S
Sbjct:  246 TGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITS 302
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.340e-30
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGNSCKHQGYAEFNP SWP SCAP KADWINE+VG CGDGDAYPEEFWNCADI I+S
Sbjct:  246 TGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITS 302
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BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.920e-19
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGN+CKH GY EF+P S P  CAP K DW+   +G CG+   YPEEFWNCADIEI+S
Sbjct:  311 TGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITS 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 9.600e-18
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEISS 207
            TGN+CKH GY +F P SWP  CAP KA+WIN     CG   AYPEE W+C+DI I++
Sbjct:   72 TGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITT 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.030e-17
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   37 TGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCGDGDAYPEEFWNCADIEIS 204
            TGNSCKH GY EF P SWP +CAP+K DWI      CG+  +YPEEFW CAD  I+
Sbjct:  222 TGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAIT 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12537.5131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LM93_ECTSI2.990e-3492.98EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI1.460e-3289.47EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FP25_ECTSI8.330e-3287.93EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI1.310e-3189.47EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KD35_9PHAE4.060e-3189.09CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI6.440e-3189.47EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE4.340e-3087.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI36_9PHAE1.920e-1963.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G832_ECTSI9.600e-1857.89EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI2.030e-1760.71EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12537contigM-pyrifera_M_contig12537:114..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.3e-27
Seed eggNOG ortholog2880.D8LD67
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.6761923-CDS-M-pyrifera_M_contig12537:113..3291622815769.6761923-CDS-M-pyrifera_M_contig12537:113..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12537 114..329 +
1692277560.967209-CDS-M-pyrifera_M_contig12537:113..3291692277560.967209-CDS-M-pyrifera_M_contig12537:113..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12537 114..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12537.5131.1prot_M-pyrifera_M_contig12537.5131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12537 114..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12537.5131.1

>prot_M-pyrifera_M_contig12537.5131.1 ID=prot_M-pyrifera_M_contig12537.5131.1|Name=mRNA_M-pyrifera_M_contig12537.5131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
PLPTSLGLHLSDTGNSCKHQGYAEFNPPSWPGSCAPKKADWINEVVGQCG
DGDAYPEEFWNCADIEISSGA*
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mRNA from alignment at M-pyrifera_M_contig12537:114..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12537.5131.1 ID=mRNA_M-pyrifera_M_contig12537.5131.1|Name=mRNA_M-pyrifera_M_contig12537.5131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig12537:114..329+ (Macrocystis pyrifera P11B4 male)
CCACTTCCTACCTCTTTGGGGTTGCATCTCTCAGACACCGGCAACTCGTG
CAAGCACCAAGGTTACGCGGAGTTCAACCCCCCTTCGTGGCCTGGCTCGT
GCGCTCCCAAGAAGGCGGACTGGATCAACGAAGTGGTCGGGCAGTGCGGC
GACGGTGACGCCTACCCCGAGGAGTTCTGGAACTGCGCCGACATCGAGAT
CTCGTCAGGTGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12537:114..329+

>mRNA_M-pyrifera_M_contig12537.5131.1 ID=mRNA_M-pyrifera_M_contig12537.5131.1|Name=mRNA_M-pyrifera_M_contig12537.5131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig12537:114..329+ (Macrocystis pyrifera P11B4 male)
CCACTTCCTACCTCTTTGGGGTTGCATCTCTCAGACACCGGCAACTCGTG
CAAGCACCAAGGTTACGCGGAGTTCAACCCCCCTTCGTGGCCTGGCTCGT
GCGCTCCCAAGAAGGCGGACTGGATCAACGAAGTGGTCGGGCAGTGCGGC
GACGGTGACGCCTACCCCGAGGAGTTCTGGAACTGCGCCGACATCGAGAT
CTCGTCAGGTGCGTAGCCACTTCCTACCTCTTTGGGGTTGCATCTCTCAG
ACACCGGCAACTCGTGCAAGCACCAAGGTTACGCGGAGTTCAACCCCCCT
TCGTGGCCTGGCTCGTGCGCTCCCAAGAAGGCGGACTGGATCAACGAAGT
GGTCGGGCAGTGCGGCGACGGTGACGCCTACCCCGAGGAGTTCTGGAACT
GCGCCGACATCGAGATCTCGTCAGGTGCGTAG
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