mRNA_M-pyrifera_M_contig125339.5128.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125339.5128.1
Unique NamemRNA_M-pyrifera_M_contig125339.5128.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A517Z7E8_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7E8_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.830e-7
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   31 PYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            PYT EW+  +RA LG+  CR LG+YAIP DF LSVV+
Sbjct:   16 PYTTEWYHSLRAILGEGGCRQLGIYAIPDDFLLSVVV 52          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A5C5VY73_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5VY73_9PLAN)

HSP 1 Score: 51.6 bits (122), Expect = 2.350e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   34 YTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            Y+ EW++  ++ LG+AACR LG+YAIP  FRLSVVI
Sbjct:   17 YSQEWYQERKSVLGEAACRQLGLYAIPDGFRLSVVI 52          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A5C9CSX9_9BACT (Family 2 glycosyl transferase n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A5C9CSX9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   31 PYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            P+T EWF R++  LG+AACR LG++ IP D+ LSVVI
Sbjct:    8 PHTPEWFARLKDTLGEAACRQLGLFVIPPDWVLSVVI 44          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A1I3PHU4_9PLAN (Glycosyl transferase family 2 n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3PHU4_9PLAN)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   34 YTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            YT EW+  M+A LG+ ACR LG+YA+P +F LSVVI
Sbjct:   14 YTPEWYTTMKATLGEGACRQLGIYAVPENFVLSVVI 49          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A7C4QPH9_9PLAN (Glycosyltransferase family 2 protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QPH9_9PLAN)

HSP 1 Score: 51.2 bits (121), Expect = 3.230e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   31 PYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            PY+  W++R++  LG+  CR LG+YAIP DF LSVVI
Sbjct:   13 PYSQAWYQRLKRTLGEITCRQLGLYAIPDDFLLSVVI 49          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A2E0AYE8_9BACT (Glycosyl transferase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AYE8_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 4.410e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   13 PENLPDPYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            P     PYT EW+ R+R  +G+ AC+ LG+Y IP  F LSVVI
Sbjct:    8 PATELQPYTAEWYSRIRDGIGEIACKELGIYVIPDSFCLSVVI 50          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: UPI00029AB4CF (glycosyltransferase family 2 protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029AB4CF)

HSP 1 Score: 50.8 bits (120), Expect = 4.420e-6
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1
Query:   31 PYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            PY+ EW+  +R+ LG  AC  LG+YAIP DF LSVVI
Sbjct:   12 PYSQEWYATLRSTLGGTACHQLGLYAIPDDFVLSVVI 48          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: UPI001984D853 (Glycosyltransferase family 2 protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001984D853)

HSP 1 Score: 50.8 bits (120), Expect = 4.500e-6
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   31 PYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            P+T EWF R++  LGDAACR LG++ IP  + LSVVI
Sbjct:   19 PHTPEWFARLKETLGDAACRQLGLFVIPPQWVLSVVI 55          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A517ZPK1_9PLAN (Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZPK1_9PLAN)

HSP 1 Score: 48.9 bits (115), Expect = 2.150e-5
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1
Query:   16 ENLPDPYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            E+   PY+  W+  +  Q G+  CR LG+YAIP DF LSVVI
Sbjct:    3 ESSESPYSQPWYDTLLKQFGEGVCRQLGVYAIPEDFLLSVVI 44          
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Match: A0A517QGY3_9PLAN (Undecaprenyl-phosphate mannosyltransferase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QGY3_9PLAN)

HSP 1 Score: 47.8 bits (112), Expect = 5.600e-5
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   34 YTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI 141
            Y++EW+  ++  LG+A CR LG+YA+P D+ LSVVI
Sbjct:   14 YSLEWYNTLKNVLGEAGCRQLGIYALPDDYVLSVVI 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125339.5128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A517Z7E8_9PLAN1.830e-762.16Undecaprenyl-phosphate mannosyltransferase n=1 Tax... [more]
A0A5C5VY73_9PLAN2.350e-661.11Undecaprenyl-phosphate mannosyltransferase n=1 Tax... [more]
A0A5C9CSX9_9BACT3.200e-659.46Family 2 glycosyl transferase n=3 Tax=Planctomycet... [more]
A0A1I3PHU4_9PLAN3.200e-661.11Glycosyl transferase family 2 n=1 Tax=Planctomicro... [more]
A0A7C4QPH9_9PLAN3.230e-656.76Glycosyltransferase family 2 protein n=1 Tax=Schle... [more]
A0A2E0AYE8_9BACT4.410e-651.16Glycosyl transferase n=2 Tax=Planctomycetia TaxID=... [more]
UPI00029AB4CF4.420e-659.46glycosyltransferase family 2 protein n=1 Tax=Schle... [more]
UPI001984D8534.500e-659.46Glycosyltransferase family 2 protein n=1 Tax=Planc... [more]
A0A517ZPK1_9PLAN2.150e-550.00Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabi... [more]
A0A517QGY3_9PLAN5.600e-552.78Undecaprenyl-phosphate mannosyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125339contigM-pyrifera_M_contig125339:374..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.5188353-CDS-M-pyrifera_M_contig125339:373..5141622815769.5188353-CDS-M-pyrifera_M_contig125339:373..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125339 374..514 +
1692277560.9048443-CDS-M-pyrifera_M_contig125339:373..5141692277560.9048443-CDS-M-pyrifera_M_contig125339:373..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125339 374..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125339.5128.1prot_M-pyrifera_M_contig125339.5128.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125339 374..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125339.5128.1

>prot_M-pyrifera_M_contig125339.5128.1 ID=prot_M-pyrifera_M_contig125339.5128.1|Name=mRNA_M-pyrifera_M_contig125339.5128.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MTTEPENLPDPYTVEWFKRMRAQLGDAACRTLGMYAIPTDFRLSVVI
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mRNA from alignment at M-pyrifera_M_contig125339:374..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125339.5128.1 ID=mRNA_M-pyrifera_M_contig125339.5128.1|Name=mRNA_M-pyrifera_M_contig125339.5128.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig125339:374..514+ (Macrocystis pyrifera P11B4 male)
ATGACCACCGAACCGGAAAATCTGCCCGATCCGTACACCGTCGAGTGGTT TAAGCGGATGCGTGCCCAGCTGGGTGACGCCGCTTGCCGCACTCTGGGGA TGTACGCAATCCCGACCGACTTTCGGTTGTCTGTCGTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125339:374..514+

>mRNA_M-pyrifera_M_contig125339.5128.1 ID=mRNA_M-pyrifera_M_contig125339.5128.1|Name=mRNA_M-pyrifera_M_contig125339.5128.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig125339:374..514+ (Macrocystis pyrifera P11B4 male)
ATGACCACCGAACCGGAAAATCTGCCCGATCCGTACACCGTCGAGTGGTT
TAAGCGGATGCGTGCCCAGCTGGGTGACGCCGCTTGCCGCACTCTGGGGA
TGTACGCAATCCCGACCGACTTTCGGTTGTCTGTCGTGATCATGACCACC
GAACCGGAAAATCTGCCCGATCCGTACACCGTCGAGTGGTTTAAGCGGAT
GCGTGCCCAGCTGGGTGACGCCGCTTGCCGCACTCTGGGGATGTACGCAA
TCCCGACCGACTTTCGGTTGTCTGTCGTGATC
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