mRNA_M-pyrifera_M_contig125331.5126.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125331.5126.1
Unique NamemRNA_M-pyrifera_M_contig125331.5126.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A2D8FBB2_9EURY (Uncharacterized protein n=7 Tax=cellular organisms TaxID=131567 RepID=A0A2D8FBB2_9EURY)

HSP 1 Score: 167 bits (422), Expect = 3.810e-49
Identity = 86/124 (69.35%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAFARMGR 372
            LREWRGD HVA L AAP D +EALILHAAT  VP+ AL ATR+WPD+ W A VARLVARGLV  DE FT  G  +R +IERRTN A+L LVEAVG   T RLI+LLKP+RR LLDGGAFA  GR
Sbjct:  156 LREWRGDAHVAALVAAPADPIEALILHAATGIVPKVALTATRQWPDEQWDAGVARLVARGLVQEDESFTEMGEAFRADIERRTNQAALPLVEAVGPDRTARLIDLLKPVRRALLDGGAFAAFGR 279          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A2E8LDT7_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LDT7_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 4.070e-49
Identity = 85/124 (68.55%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAFARMGR 372
            LREWRGD HVA L AAP D +EALILHAAT  VP+ AL ATR+W D+ W A VARLVARGLV  DE FT  G  +R +IERRTN A+L LVEAVG   T RLI+LLKP+RR LLDGGAFA  GR
Sbjct:   51 LREWRGDAHVAALVAAPADPIEALILHAATGIVPKVALTATRQWSDEQWDAGVARLVARGLVQEDESFTEMGEAFRADIERRTNRAALPLVEAVGPDRTARLIDLLKPVRRALLDGGAFAAFGR 174          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A7Y2DCN9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DCN9_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 3.420e-35
Identity = 72/119 (60.50%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAF 357
            +REWRGDVHVA L + PL  +EALILHAAT QVP  AL ATR W DD W A VA L  RGLV+AD  FT +G   R  IE RTN A +ALV+AVG  G  RL  LLKP + GLL  G F
Sbjct:  164 IREWRGDVHVAALVSEPLHPIEALILHAATGQVPVAALRATRGWSDDDWDAKVAGLADRGLVNADASFTPAGEATRAAIEDRTNAACVALVDAVGADGADRLFNLLKPWQAGLLASGIF 282          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A846YYC6_9ACTN (Uncharacterized protein n=1 Tax=Actinomadura latina TaxID=163603 RepID=A0A846YYC6_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 6.880e-27
Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAF 357
            LRE+RGD H+AVLTA  +  +EAL+LHAAT  +P+  L ATR WP + W A   RL ARGL+D D   TA G  +R  IE RT+  +L    A+GE    RL EL +P  R ++D G F
Sbjct:  153 LREFRGDGHIAVLTAEGVTPIEALVLHAATGTMPKTFLTATRAWPAEQWDATAERLRARGLLDGDS-LTAEGEAFRQSIEDRTDALALPAYAALGEDDCERLAELARPFGRAVMDNGLF 270          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A7V9B5K0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B5K0_9ACTN)

HSP 1 Score: 108 bits (270), Expect = 2.080e-26
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAF 357
            LRE RGD H+A L  A + G EAL+LHAA+ +VPR AL  +R W D+ W+AAV  L +RGLVD D  FT +GR  RD IE RT+  ++A    +GE G   L  L++P+ + ++  G F
Sbjct:  156 LREHRGDGHIACLVEAGIGGCEALVLHAASGEVPRAALQGSRGWSDEDWSAAVEGLASRGLVDVDGTFTDAGRARRDVIEARTDALAVAPWATIGEDGCDELRRLVRPLSKAIVASGTF 274          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A4R4P2E7_9ACTN (Uncharacterized protein n=2 Tax=Actinomadura bangladeshensis TaxID=453573 RepID=A0A4R4P2E7_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 3.790e-26
Identity = 59/119 (49.58%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAF 357
            LRE+RGD H+AVLTA  +  VEAL+LHAAT  +P+  L ATR WP + W A   RL ARGL+D  E  T  G  +R  IE RT+  +L    A+GE G  RL EL +P  R + D G F
Sbjct:  153 LREFRGDGHIAVLTAEGVTPVEALVLHAATGTMPKAFLTATRAWPAEQWDATAKRLRARGLLDG-ESLTPEGEAFRQRIEDRTDELALPAYAALGEDGCERLAELARPFGRAVADAGLF 270          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A4R4S077_9ACTN (Uncharacterized protein n=1 Tax=Actinomadura sp. KC345 TaxID=2530371 RepID=A0A4R4S077_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 4.120e-25
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGG 351
            LRE+RGD H+AVLTA  +  +EAL+LH AT  VP   L ATR WP D W A   RL  RGL+D  E  T  G+++R  IE RT+  +L     +GE G  RL EL +P  R ++D G
Sbjct:  153 LREFRGDGHIAVLTAEGVTPLEALVLHGATGTVPTPFLKATRAWPSDEWEATAERLRGRGLLDG-ESLTTEGKDFRRHIEDRTDALALPAYSVLGEEGCERLAELARPYGRAVVDAG 268          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: UPI0004C4C379 (hypothetical protein n=1 Tax=Streptomyces rimosus TaxID=1927 RepID=UPI0004C4C379)

HSP 1 Score: 104 bits (260), Expect = 8.280e-25
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAFARM 366
            LREWRGD H++VL    L   + L++HAAT + P   L  TRRW D+ WAAA ARLVARG +DAD   T +G   R+ IE  T+    AL   VG+AG  RL  L+ PI       G +A +
Sbjct:  170 LREWRGDAHLSVLAGHRLGPCDCLVMHAATGRAPVGILRTTRRWNDEEWAAATARLVARGWLDADGTATDAGAAARERIEAETDEHCAALWAPVGDAGARRLASLITPIGEAFTAAGTYAAL 291          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A7Y6I6K0_9ACTN (Uncharacterized protein n=2 Tax=Nonomuraea TaxID=83681 RepID=A0A7Y6I6K0_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 2.630e-24
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAFARMG 369
            LRE+RGD H+A L    + G+EAL+LH A+ +VP   L  +R WP++ WAAAV RL  RGL+  D+  +A G   R  IE RT+  +L    A+GE G  RL EL +P  R ++D G     G
Sbjct:  153 LREFRGDGHIAALLTEGVGGLEALVLHGASGEVPSAVLRISRAWPEEEWAAAVDRLRRRGLLGEDDTLSAEGTALRRHIEDRTDALALPAYGALGEEGCERLAELARPFGRAVVDAGLLDLSG 275          
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Match: A0A5S4F2B9_9ACTN (Uncharacterized protein n=1 Tax=Nonomuraea turkmeniaca TaxID=103838 RepID=A0A5S4F2B9_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 3.420e-24
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWAAAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTHRLIELLKPIRRGLLDGGAFARMG 369
            LRE+RGD HVA L A  L G+EAL+LHAA+ +VP   L  +R WP++AW AA A L  RGL+DA    +A G+  R  IE RT+  ++A   A+G+ G  RL EL +P  R ++D G   R+G
Sbjct:  157 LREFRGDGHVATLLAEGLGGLEALVLHAASGEVPTAFLKISRAWPEEAWTAAEAALQDRGLLDAGA-LSAEGQALRRHIEERTDTLAMAAYGALGDDGCERLAELARPFGRRVVDAGLL-RLG 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125331.5126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8FBB2_9EURY3.810e-4969.35Uncharacterized protein n=7 Tax=cellular organisms... [more]
A0A2E8LDT7_9ACTN4.070e-4968.55Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7Y2DCN9_9ACTN3.420e-3560.50Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A846YYC6_9ACTN6.880e-2748.74Uncharacterized protein n=1 Tax=Actinomadura latin... [more]
A0A7V9B5K0_9ACTN2.080e-2647.06Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A4R4P2E7_9ACTN3.790e-2649.58Uncharacterized protein n=2 Tax=Actinomadura bangl... [more]
A0A4R4S077_9ACTN4.120e-2547.86Uncharacterized protein n=1 Tax=Actinomadura sp. K... [more]
UPI0004C4C3798.280e-2545.90hypothetical protein n=1 Tax=Streptomyces rimosus ... [more]
A0A7Y6I6K0_9ACTN2.630e-2443.90Uncharacterized protein n=2 Tax=Nonomuraea TaxID=8... [more]
A0A5S4F2B9_9ACTN3.420e-2447.15Uncharacterized protein n=1 Tax=Nonomuraea turkmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125331contigM-pyrifera_M_contig125331:3..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.5
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog1394178.AWOO02000027_gene5253
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcriptional regulator
EggNOG OGs2GMDI@201174,4EIPN@85012,COG1846@1,COG1846@2
COG Functional cat.K
Best tax levelStreptosporangiales
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.439413-CDS-M-pyrifera_M_contig125331:2..3771622815769.439413-CDS-M-pyrifera_M_contig125331:2..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125331 3..377 +
1692277560.8699698-CDS-M-pyrifera_M_contig125331:2..3771692277560.8699698-CDS-M-pyrifera_M_contig125331:2..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125331 3..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125331.5126.1prot_M-pyrifera_M_contig125331.5126.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125331 3..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125331.5126.1

>prot_M-pyrifera_M_contig125331.5126.1 ID=prot_M-pyrifera_M_contig125331.5126.1|Name=mRNA_M-pyrifera_M_contig125331.5126.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
LREWRGDVHVAVLTAAPLDGVEALILHAATDQVPREALVATRRWPDDAWA
AAVARLVARGLVDADERFTASGREYRDEIERRTNVASLALVEAVGEAGTH
RLIELLKPIRRGLLDGGAFARMGR*
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mRNA from alignment at M-pyrifera_M_contig125331:3..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125331.5126.1 ID=mRNA_M-pyrifera_M_contig125331.5126.1|Name=mRNA_M-pyrifera_M_contig125331.5126.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig125331:3..377+ (Macrocystis pyrifera P11B4 male)
CTACGCGAGTGGCGCGGCGATGTGCACGTGGCGGTACTGACCGCGGCACC ACTCGACGGTGTCGAGGCGTTGATTCTCCACGCGGCGACCGATCAGGTGC CGCGGGAAGCGCTCGTCGCGACCCGGCGCTGGCCCGACGACGCATGGGCT GCGGCCGTTGCGCGGCTCGTGGCCCGCGGGCTCGTCGATGCCGACGAACG ATTCACCGCTTCCGGGCGCGAGTACCGCGACGAGATCGAGCGGCGAACGA ACGTCGCCAGTCTCGCCCTCGTCGAAGCGGTGGGGGAGGCCGGTACGCAC CGGCTCATCGAATTGCTCAAGCCGATCCGCCGGGGTCTTCTCGACGGTGG CGCATTCGCGAGGATGGGAAGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125331:3..377+

>mRNA_M-pyrifera_M_contig125331.5126.1 ID=mRNA_M-pyrifera_M_contig125331.5126.1|Name=mRNA_M-pyrifera_M_contig125331.5126.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig125331:3..377+ (Macrocystis pyrifera P11B4 male)
CTACGCGAGTGGCGCGGCGATGTGCACGTGGCGGTACTGACCGCGGCACC
ACTCGACGGTGTCGAGGCGTTGATTCTCCACGCGGCGACCGATCAGGTGC
CGCGGGAAGCGCTCGTCGCGACCCGGCGCTGGCCCGACGACGCATGGGCT
GCGGCCGTTGCGCGGCTCGTGGCCCGCGGGCTCGTCGATGCCGACGAACG
ATTCACCGCTTCCGGGCGCGAGTACCGCGACGAGATCGAGCGGCGAACGA
ACGTCGCCAGTCTCGCCCTCGTCGAAGCGGTGGGGGAGGCCGGTACGCAC
CGGCTCATCGAATTGCTCAAGCCGATCCGCCGGGGTCTTCTCGACGGTGG
CGCATTCGCGAGGATGGGAAGATGACTACGCGAGTGGCGCGGCGATGTGC
ACGTGGCGGTACTGACCGCGGCACCACTCGACGGTGTCGAGGCGTTGATT
CTCCACGCGGCGACCGATCAGGTGCCGCGGGAAGCGCTCGTCGCGACCCG
GCGCTGGCCCGACGACGCATGGGCTGCGGCCGTTGCGCGGCTCGTGGCCC
GCGGGCTCGTCGATGCCGACGAACGATTCACCGCTTCCGGGCGCGAGTAC
CGCGACGAGATCGAGCGGCGAACGAACGTCGCCAGTCTCGCCCTCGTCGA
AGCGGTGGGGGAGGCCGGTACGCACCGGCTCATCGAATTGCTCAAGCCGA
TCCGCCGGGGTCTTCTCGACGGTGGCGCATTCGCGAGGATGGGAAGATGA
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