mRNA_M-pyrifera_M_contig125320.5123.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125320.5123.1
Unique NamemRNA_M-pyrifera_M_contig125320.5123.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A5D6Y597_9STRA (DUF4201 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y597_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.440e-19
Identity = 56/159 (35.22%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    4 TAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            TA + ++RY E ++ +H  + +M  +  ++ R +L L+  L  +E  + E++++ +  K E+ + A    +G+ +PK  + +   AD +  + V++VR+ + + +  +K LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   72 TATENEKRYLECLRSVHEVKVQMAAAQTQYDRIALDLQARLDEKEAKVTEIQDSFLEFKREIAKNAENMRTGKPIPKRVIGQFEAADLKKDQEVEKVRLKNINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 230          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: G5A5F8_PHYSP (DUF4201 domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A5F8_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 2.820e-18
Identity = 56/159 (35.22%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    4 TAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            +A++  +RY E ++ +H A+ +M  +  ++ + +L L+  L  +E  + E+++A +  K EV + A    +G+ + K  + +   A+    + V++VR+ H + +  +K LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:    7 SASENAKRYLECLRGVHEAKVQMVSAQSQYDKVALELQSRLDEKEAKVTEIQDAFLEFKREVARNAENLRTGKPIAKRVIAQFEAAELRKDQEVEKVRLKHINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 165          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: K3WVZ3_GLOUD (DUF4201 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVZ3_GLOUD)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-17
Identity = 55/159 (34.59%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    4 TAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            TA + ++RY E ++ +H  + +   +  ++   +L L+  L  +E  ++E++++ +  K E+ + A    +G+ +PK  + +   AD +  + V++VR+ + + +  +K LE ++  R+ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   72 TATENEKRYLECLRSVHEVKVQTLTAQAQYDHIALDLQARLDEKESKVSEIQDSFLEFKREIAKNAESMRTGKPIPKRVISQFEAADLKKDQEVEKVRLKNINLRTHLKKLEQQLHAREQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 230          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A482R733_9ARCH (Coiled-coil domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R733_9ARCH)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-17
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   70 MEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            M+ES  R   ++  LRQ +  ++    ++  A  A K+E+  +A    +GR +P  T+   I  + +  E V RV++ H H + +V  LE+ ++ R+ V +GLA+IDFEQLKIEN+T++EKIEDR +E+ KLR K T
Sbjct:    2 MDEST-RADAQTEDLRQRVEDKQAKCEQIVTAFTAFKSEMAGSAVNSHTGRPIPHVTLARFITVERDKDEEVARVQLKHIHLQSQVTKLEEALKKREQVADGLAMIDFEQLKIENSTLNEKIEDRNDEIAKLRKKAT 137          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A6A3TBY0_9STRA (DUF4201 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TBY0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.530e-17
Identity = 56/159 (35.22%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    4 TAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            +A++  +RY E ++ +H A+ +M  +  ++ + +L L+  L  +E  + E+++A +  K EV + A    +G+ + K  + +   A+    + V++VR+ H + +  +K LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:  137 SASENAKRYLECLRGVHEAKVQMVAAQSQYDKVALELQSRLDEKEAKVTEIQDAFLEFKREVARNAENLRTGKPIAKRVIAQFEAAELRKDQEVEKVRLKHINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 295          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: W2R600_PHYPN (DUF4201 domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2R600_PHYPN)

HSP 1 Score: 87.4 bits (215), Expect = 2.380e-17
Identity = 56/158 (35.44%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    7 AADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            A++  +RY E ++ +H A+ +M  +  ++ + +L L+  L  +E  + E+++A +  K EV + A    +G+ + K  + +   A+    + V++VR+ H + +  +K LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:  108 ASENAKRYLECLRSVHEAKVQMATAQSQYDKVALELQARLDEKEAKVTEIQDAFLEFKREVARNAENLRTGKPIAKRIIAQFEAAELRKDQDVEKVRLKHINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 265          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A485L1W7_9STRA (Aste57867_14260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1W7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.000e-17
Identity = 54/160 (33.75%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 LTAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            L+  + ++RY + +K +H A  ++  +  ++ R ++ L+  L  +E    E++E+ +  K EV ++A    +G+ +PK  + +   A+ +  + V++VR+ + + +  ++ LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   64 LSLVENEKRYYDCLKSVHEARAQLLTAQTQYDRIAMELQARLDEKESKANEIQESFMEFKREVARSAENTRTGKPIPKRIIAQFEVAEMKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 223          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A6G0WC92_9STRA (DUF4201 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC92_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.230e-17
Identity = 53/160 (33.12%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 LTAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            L+  + ++RY + +K +H A  ++  +  ++ + ++ L+  L  +E    E++E+ +  K EV ++A    +G+ +PK  + +   A+ +  + V++VR+ + + +  ++ LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   64 LSMVENEKRYFDCLKSVHEARTQLVTAQTQYDKIAMELQARLDEKETKANEIQESFMEFKREVARSAENTRTGKPIPKRIITQFEAAELKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 223          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: W4HB69_9STRA (DUF4201 domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4HB69_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.320e-17
Identity = 53/160 (33.12%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 LTAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            L+  + ++RY + +K +H A  ++  +  ++ + ++ L+  L  +E    E++E+ +  K EV ++A    +G+ +PK  + +   A+ +  + V++VR+ + + +  ++ LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   62 LSLVENEKRYYDCLKSVHEARAQLLTAQTQYDKIAMELQSRLDEKESKANEIQESFMEFKREVARSAENTRTGKPIPKRVIAQFEVAEMKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 221          
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Match: A0A8K1CBS3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBS3_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 9.500e-17
Identity = 53/159 (33.33%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    4 TAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALAELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRIAHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREEELRKLRAKTT 480
            +A + ++RY E ++ +H A+ +   +  ++ R +L L+  L  +E  + E++++ +  K E+ + A    +G+ +P   + +   A+ +  + V++VR+ + + +  +K LE ++  ++ + EGL LIDFEQLKIEN T++EKIE+R EEL KLR KTT
Sbjct:   82 SANENEKRYLECLRSVHEAKVQTTTAQSQYDRIALDLQAKLDEKEAKVTEIQDSFLEFKREIAKNAENMRTGKPIPARVISQFEAAELKKDQEVEKVRLKNINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTT 240          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125320.5123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Y597_9STRA4.440e-1935.22DUF4201 domain-containing protein n=1 Tax=Pythium ... [more]
G5A5F8_PHYSP2.820e-1835.22DUF4201 domain-containing protein (Fragment) n=1 T... [more]
K3WVZ3_GLOUD1.220e-1734.59DUF4201 domain-containing protein n=1 Tax=Globispo... [more]
A0A482R733_9ARCH1.280e-1739.42Coiled-coil domain-containing protein n=1 Tax=arch... [more]
A0A6A3TBY0_9STRA1.530e-1735.22DUF4201 domain-containing protein n=3 Tax=Phytopht... [more]
W2R600_PHYPN2.380e-1735.44DUF4201 domain-containing protein n=13 Tax=Phytoph... [more]
A0A485L1W7_9STRA6.000e-1733.75Aste57867_14260 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WC92_9STRA8.230e-1733.13DUF4201 domain-containing protein n=1 Tax=Aphanomy... [more]
W4HB69_9STRA8.320e-1733.13DUF4201 domain-containing protein n=3 Tax=Aphanomy... [more]
A0A8K1CBS3_PYTOL9.500e-1733.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125320contigM-pyrifera_M_contig125320:35..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog115417.EPrPW00000016836
Preferred nameCCDC96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MBBD@121069,28MPJ@1,2QS75@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.3350904-CDS-M-pyrifera_M_contig125320:34..5141622815769.3350904-CDS-M-pyrifera_M_contig125320:34..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125320 35..514 +
1692277560.8310063-CDS-M-pyrifera_M_contig125320:34..5141692277560.8310063-CDS-M-pyrifera_M_contig125320:34..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125320 35..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125320.5123.1prot_M-pyrifera_M_contig125320.5123.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125320 35..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125320.5123.1

>prot_M-pyrifera_M_contig125320.5123.1 ID=prot_M-pyrifera_M_contig125320.5123.1|Name=mRNA_M-pyrifera_M_contig125320.5123.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
LTAADKDRRYREKMKELHRAERKMEESAERHSRESLSLRQGLARREVALA
ELEEALVALKTEVLQTATQQASGRKLPKATVRELIKADEEARERVKRVRI
AHAHAKGEVKDLEDRMRNRDSVGEGLALIDFEQLKIENATVHEKIEDREE
ELRKLRAKTT
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mRNA from alignment at M-pyrifera_M_contig125320:35..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125320.5123.1 ID=mRNA_M-pyrifera_M_contig125320.5123.1|Name=mRNA_M-pyrifera_M_contig125320.5123.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig125320:35..514+ (Macrocystis pyrifera P11B4 male)
CTAACAGCTGCGGACAAAGATAGGAGATACCGAGAAAAGATGAAGGAATT GCATCGAGCAGAACGCAAGATGGAAGAATCTGCAGAAAGACATTCCAGAG AGTCACTTTCGCTCCGACAAGGGTTGGCACGCAGAGAAGTAGCACTTGCT GAATTGGAAGAAGCACTGGTGGCACTGAAAACTGAAGTGCTTCAAACTGC AACACAACAGGCATCGGGTAGAAAACTTCCCAAAGCCACAGTTCGCGAGT TGATCAAAGCAGACGAAGAGGCTCGAGAGAGAGTCAAACGTGTTCGGATT GCACATGCACACGCCAAGGGAGAAGTGAAGGACTTGGAGGATCGCATGCG AAACCGGGACTCTGTTGGGGAAGGTCTCGCATTGATTGACTTTGAGCAGC TCAAGATCGAAAATGCAACAGTGCACGAGAAAATCGAAGATCGGGAAGAA GAGTTGCGCAAACTCAGAGCCAAGACAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125320:35..514+

>mRNA_M-pyrifera_M_contig125320.5123.1 ID=mRNA_M-pyrifera_M_contig125320.5123.1|Name=mRNA_M-pyrifera_M_contig125320.5123.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig125320:35..514+ (Macrocystis pyrifera P11B4 male)
CTAACAGCTGCGGACAAAGATAGGAGATACCGAGAAAAGATGAAGGAATT
GCATCGAGCAGAACGCAAGATGGAAGAATCTGCAGAAAGACATTCCAGAG
AGTCACTTTCGCTCCGACAAGGGTTGGCACGCAGAGAAGTAGCACTTGCT
GAATTGGAAGAAGCACTGGTGGCACTGAAAACTGAAGTGCTTCAAACTGC
AACACAACAGGCATCGGGTAGAAAACTTCCCAAAGCCACAGTTCGCGAGT
TGATCAAAGCAGACGAAGAGGCTCGAGAGAGAGTCAAACGTGTTCGGATT
GCACATGCACACGCCAAGGGAGAAGTGAAGGACTTGGAGGATCGCATGCG
AAACCGGGACTCTGTTGGGGAAGGTCTCGCATTGATTGACTTTGAGCAGC
TCAAGATCGAAAATGCAACAGTGCACGAGAAAATCGAAGATCGGGAAGAA
GAGTTGCGCAAACTCAGAGCCAAGACAACACTAACAGCTGCGGACAAAGA
TAGGAGATACCGAGAAAAGATGAAGGAATTGCATCGAGCAGAACGCAAGA
TGGAAGAATCTGCAGAAAGACATTCCAGAGAGTCACTTTCGCTCCGACAA
GGGTTGGCACGCAGAGAAGTAGCACTTGCTGAATTGGAAGAAGCACTGGT
GGCACTGAAAACTGAAGTGCTTCAAACTGCAACACAACAGGCATCGGGTA
GAAAACTTCCCAAAGCCACAGTTCGCGAGTTGATCAAAGCAGACGAAGAG
GCTCGAGAGAGAGTCAAACGTGTTCGGATTGCACATGCACACGCCAAGGG
AGAAGTGAAGGACTTGGAGGATCGCATGCGAAACCGGGACTCTGTTGGGG
AAGGTCTCGCATTGATTGACTTTGAGCAGCTCAAGATCGAAAATGCAACA
GTGCACGAGAAAATCGAAGATCGGGAAGAAGAGTTGCGCAAACTCAGAGC
CAAGACAACA
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