mRNA_M-pyrifera_M_contig125308.5118.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A0A1W2G5L2_9BACT (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2G5L2_9BACT) HSP 1 Score: 73.9 bits (180), Expect = 2.540e-16 Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPK 144
MKILVILIVVSL+IAL+FLALF+WSVKSDQY DT+SP++RI YDDKP+
Sbjct: 1 MKILVILIVVSLVIALVFLALFVWSVKSDQYEDTDSPAMRIFYDDKPR 48
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A0A1M6JA45_9BACT (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Reichenbachiella agariperforans TaxID=156994 RepID=A0A1M6JA45_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 7.020e-11 Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDK-PKND 150
MKI++ LI++SL++AL+FL LF+WSVKS QY DT+SP++R+L DDK PK D
Sbjct: 1 MKIIIALILISLVVALIFLWLFVWSVKSGQYDDTDSPAVRMLMDDKKPKKD 51
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A0A3D5KLV2_9BACT (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KLV2_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.310e-10 Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPKNDKSKSKK 168
M I+++LI +SL IAL+FL +F W++KS QY DT +PS+R+L+DDKPK S KK
Sbjct: 1 MNIIIVLISISLTIALIFLGVFYWNLKSGQYEDTYTPSVRMLFDDKPKASSSTDKK 56
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A0A1I0RJ51_9BACT (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Roseivirga pacifica TaxID=1267423 RepID=A0A1I0RJ51_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.660e-10 Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPK 144
M ++VILI+ S+++A++FLA F+WSVKS QY DT SPS+R+L+DDK K
Sbjct: 1 MSVIVILIITSIVVAVVFLAAFLWSVKSGQYDDTYSPSVRMLFDDKKK 48
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: UPI000C14F4D5 (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Reichenbachiella sp. 5M10 TaxID=1889772 RepID=UPI000C14F4D5) HSP 1 Score: 58.5 bits (140), Expect = 2.860e-10 Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPKNDK 153
MKI+++LI +SL++AL+FL LF+WSV+S QY DT+SP++RIL DD K K
Sbjct: 1 MKIILLLICISLIVALIFLWLFVWSVRSGQYDDTDSPAVRILMDDSKKKKK 51
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: UPI000D6DD8BE (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI000D6DD8BE) HSP 1 Score: 58.2 bits (139), Expect = 3.980e-10 Identity = 30/48 (62.50%), Postives = 42/48 (87.50%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPK 144
M+I++ LIVVSL++A++FL LF+WSVKS QY DTESP++RIL+D+ K
Sbjct: 1 MEIIIGLIVVSLVVAIVFLYLFVWSVKSGQYDDTESPAVRILFDNNQK 48
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A1ZF92_9BACT (Cytochrome oxidase maturation protein, Cbb3-type n=1 Tax=Microscilla marina ATCC 23134 TaxID=313606 RepID=A1ZF92_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 4.660e-10 Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDK-PKNDKSKSKK 168
M ++VILI+ S+L+A+ FL FIWSVKS QY DT SPS+RIL+DD PK D +K K
Sbjct: 1 MSVIVILIIASILVAIGFLTAFIWSVKSGQYDDTYSPSVRILFDDTTPKKDLAKKSK 57
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: UPI001650714E (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Flavihumibacter stibioxidans TaxID=1834163 RepID=UPI001650714E) HSP 1 Score: 57.4 bits (137), Expect = 8.780e-10 Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPKNDKS 156
M ++V+L++ S+ +A LFL FIWSVK+ QY D SP +RIL+DDKP NDKS
Sbjct: 1 MGVIVLLLIASIAVAALFLGGFIWSVKNGQYDDEFSPPVRILFDDKPSNDKS 52
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: UPI000570F601 (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Thermonema rossianum TaxID=55505 RepID=UPI000570F601) HSP 1 Score: 57.4 bits (137), Expect = 1.010e-9 Identity = 26/48 (54.17%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPK 144
M ++++L++VS +A LF+ +F W+V+S QY DTESP++RILY+DKPK
Sbjct: 1 MSVIILLVLVSTTVAALFVGVFFWAVRSGQYEDTESPAVRILYEDKPK 48
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Match: A0A6N9NK91_9FLAO (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Acidiluteibacter ferrifornacis TaxID=2692424 RepID=A0A6N9NK91_9FLAO) HSP 1 Score: 57.0 bits (136), Expect = 1.540e-9 Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPKNDKSKSKK 168
M +L+ILI+VSL +A+ FL F+WSVK+ QY D +PS+R+L+DDKPK S ++K
Sbjct: 1 MNVLIILIIVSLTVAIGFLVAFVWSVKAGQYDDDYTPSVRMLFDDKPKETNSVNQK 56 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125308.5118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125308.5118.1 >prot_M-pyrifera_M_contig125308.5118.1 ID=prot_M-pyrifera_M_contig125308.5118.1|Name=mRNA_M-pyrifera_M_contig125308.5118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp MKILVILIVVSLLIALLFLALFIWSVKSDQYSDTESPSIRILYDDKPKNDback to top mRNA from alignment at M-pyrifera_M_contig125308:125..295- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125308.5118.1 ID=mRNA_M-pyrifera_M_contig125308.5118.1|Name=mRNA_M-pyrifera_M_contig125308.5118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig125308:125..295- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125308:125..295- >mRNA_M-pyrifera_M_contig125308.5118.1 ID=mRNA_M-pyrifera_M_contig125308.5118.1|Name=mRNA_M-pyrifera_M_contig125308.5118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig125308:125..295- (Macrocystis pyrifera P11B4 male)back to top |