mRNA_M-pyrifera_M_contig125266.5113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125266.5113.1
Unique NamemRNA_M-pyrifera_M_contig125266.5113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig125266.5113.1 vs. uniprot
Match: UPI001ED8A09B (zinc finger protein 658B-like isoform X5 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A09B)

HSP 1 Score: 49.3 bits (116), Expect = 2.280e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QKKNLRTHIRAVHLKETPHQCSICERAFAHKHLLKRHLQVHAKE 132
            Q  NL  HIR  HLK  PH+C IC+R FA +H+L+ H  VH+ +
Sbjct:  593 QSTNLSAHIRNFHLKIKPHECGICKRRFAVRHILRTHYAVHSDD 636
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125266.5113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001ED8A09B2.280e-550.00zinc finger protein 658B-like isoform X5 n=2 Tax=I... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125266contigM-pyrifera_M_contig125266:32..193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.7456684-CDS-M-pyrifera_M_contig125266:31..1931622815768.7456684-CDS-M-pyrifera_M_contig125266:31..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125266 32..193 +
1692277560.6041386-CDS-M-pyrifera_M_contig125266:31..1931692277560.6041386-CDS-M-pyrifera_M_contig125266:31..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125266 32..193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125266.5113.1prot_M-pyrifera_M_contig125266.5113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125266 32..193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125266.5113.1

>prot_M-pyrifera_M_contig125266.5113.1 ID=prot_M-pyrifera_M_contig125266.5113.1|Name=mRNA_M-pyrifera_M_contig125266.5113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
QKKNLRTHIRAVHLKETPHQCSICERAFAHKHLLKRHLQVHAKESSTQAA
AANG
back to top

mRNA from alignment at M-pyrifera_M_contig125266:32..193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125266.5113.1 ID=mRNA_M-pyrifera_M_contig125266.5113.1|Name=mRNA_M-pyrifera_M_contig125266.5113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig125266:32..193+ (Macrocystis pyrifera P11B4 male)
CAGAAAAAGAATCTTCGAACGCACATTCGCGCGGTGCATCTCAAGGAGAC
ACCACACCAATGCAGCATTTGCGAGAGAGCCTTCGCTCACAAGCACCTCC
TGAAGAGGCACTTGCAGGTGCACGCTAAGGAGTCTTCTACCCAAGCAGCA
GCGGCGAACGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125266:32..193+

>mRNA_M-pyrifera_M_contig125266.5113.1 ID=mRNA_M-pyrifera_M_contig125266.5113.1|Name=mRNA_M-pyrifera_M_contig125266.5113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig125266:32..193+ (Macrocystis pyrifera P11B4 male)
CAGAAAAAGAATCTTCGAACGCACATTCGCGCGGTGCATCTCAAGGAGAC
ACCACACCAATGCAGCATTTGCGAGAGAGCCTTCGCTCACAAGCACCTCC
TGAAGAGGCACTTGCAGGTGCACGCTAAGGAGTCTTCTACCCAAGCAGCA
GCGGCGAACGGGCAGAAAAAGAATCTTCGAACGCACATTCGCGCGGTGCA
TCTCAAGGAGACACCACACCAATGCAGCATTTGCGAGAGAGCCTTCGCTC
ACAAGCACCTCCTGAAGAGGCACTTGCAGGTGCACGCTAAGGAGTCTTCT
ACCCAAGCAGCAGCGGCGAACGGG
back to top