mRNA_M-pyrifera_M_contig125256.5111.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125256.5111.1
Unique NamemRNA_M-pyrifera_M_contig125256.5111.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: Q54TV3_DICDI (Protein phosphatase 4 regulatory subunit 1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TV3_DICDI)

HSP 1 Score: 125 bits (314), Expect = 2.870e-31
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 SSRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SSRWV N+AFQ+LG FIA+  G ++   LL+ Y  M+  +  +F DSD V  CA++FP VL TVG  RWP LKETY  LV+D   KVRRTLS+S+HE+AKILG
Sbjct:  285 SSRWVNNTAFQNLGPFIATFEGSQITPKLLNLYTNMINPSTIRFPDSDLVTHCAFNFPAVLYTVGSSRWPELKETYLTLVKDTNWKVRRTLSHSIHEIAKILG 387
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: A0A7S0Z405_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z405_9CRYP)

HSP 1 Score: 114 bits (286), Expect = 2.000e-30
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGN-KSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILGTEI 318
            SRWVRN+AFQHLG  IA+LS  EV   +L  +  M  G      GDS+    CAY+FP V+LTVG + WP L++ Y  LV+D+Q KVRRTL++SLHE++ ILG E+
Sbjct:   29 SRWVRNAAFQHLGPLIATLSADEVTPQILQLFSSMATGKCNGGAGDSEMPNHCAYNFPAVVLTVGREGWPLLRDAYAELVKDIQWKVRRTLAFSLHELSLILGPEL 134
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: L1IMG2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IMG2_GUITC)

HSP 1 Score: 120 bits (302), Expect = 7.650e-30
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGN-KSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILGTEI 318
            SRWVRN+AFQHLG  IA+LS +EV   LL +Y  M  G  +S   D D   FCAY+FP V++TVG + W  L+E Y  L+ D+Q KVRRTLSYS+HE+A ILG E+
Sbjct:  197 SRWVRNAAFQHLGPLIATLSTEEVTPKLLQYYSSMATGKGQSVTADHDLPTFCAYNFPAVVMTVGRENWVHLQEAYHELINDIQWKVRRTLSYSIHEIALILGPEL 302
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: UPI0006450659 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450659)

HSP 1 Score: 120 bits (302), Expect = 1.210e-29
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SRWV N+AFQ+LG FIA+  G +V   LL ++  M++ + ++F DSD V  CA++FP VL TVG  RW  L ETYF LV D   KVRR+LS+SLHE+AKILG
Sbjct:  297 SRWVNNTAFQNLGPFIATFDGSQVTPKLLKYFTEMISPSSNRFPDSDLVTHCAFNFPAVLYTVGSSRWSELSETYFSLVNDTNWKVRRSLSHSLHEIAKILG 398
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: A0A151Z420_9MYCE (Protein phosphatase 4 regulatory subunit 1 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z420_9MYCE)

HSP 1 Score: 116 bits (290), Expect = 4.860e-28
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 SSRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SSRWV N+AFQ+LG FIA+  G +V   L+ ++  M+  +  KF DSD +  CA++FP VL+T+G  RW  LK+TY  LV D   KVRR+LS+S+HE+AKILG
Sbjct:  291 SSRWVNNTAFQNLGPFIATFDGSQVTPKLIRYFTDMINPSSIKFPDSDLITRCAFNFPAVLMTIGQARWNELKDTYITLVSDTNWKVRRSLSHSIHEIAKILG 393
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: F4PHM0_CAVFA (Protein phosphatase 4 regulatory subunit 1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHM0_CAVFA)

HSP 1 Score: 115 bits (288), Expect = 9.030e-28
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SRWV ++AFQ+LG FIA+  G +V   LL ++  M+  +K++F +SD V  CA++FP VLLTVG  RW  L ETY  LV D   +VRR+LS+SLHE+AKILG
Sbjct:  285 SRWVNSAAFQNLGPFIATFDGSQVTPKLLQYFTHMILPDKNRFPESDLVTHCAFNFPAVLLTVGSSRWSELSETYSNLVSDTTWRVRRSLSHSLHEIAKILG 386
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: D3AY02_POLPP (Protein phosphatase 4 regulatory subunit 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AY02_POLPP)

HSP 1 Score: 115 bits (287), Expect = 1.340e-27
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SRWV  +AFQ+LG FIA+  G +V   LL ++  M+     +F DSD V  CA++FP VL TVG  RW  L ETYF LV D   KVRR+LS+SLHE+AKILG
Sbjct:  295 SRWVNGTAFQNLGPFIATFDGSQVTPKLLRYFTEMILPASIRFPDSDLVTHCAFNFPAVLYTVGSSRWSELSETYFSLVNDTNWKVRRSLSHSLHEIAKILG 396
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: A0A7S0QD95_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QD95_9CRYP)

HSP 1 Score: 111 bits (277), Expect = 4.080e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFG-DSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILG 309
            SRWVRNSAFQ+LG  IA+L+  E+   LL +Y  M +G  S  G D++   FCAY+FP V ++ G D+W  L+E Y  L +D+Q KVRRTL+YS+HE+A ILG
Sbjct:    7 SRWVRNSAFQYLGPLIATLANDEITPKLLQYYSSMASGKGSTGGSDNEMPAFCAYNFPAVAMSAGRDKWKHLEEAYRELQKDIQWKVRRTLAYSVHEMALILG 109
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: A0A1Y1YIY5_9FUNG (ARM repeat-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIY5_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 4.080e-26
Identity = 56/102 (54.90%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 SRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMV-AGNKSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKIL 306
            SRWV+  A   LG+ IA   GQEVPE L+D Y  M  + NK+   D D  L CAY+FP VL+T+G  +WP L E Y  L RD Q+ VRRTL+YSLHEVAK+L
Sbjct:  312 SRWVQTCAEDGLGRLIAIFDGQEVPEVLIDKYMSMFPSSNKNSIRDPDRTLRCAYNFPAVLMTLGSKKWPDLAEDYIALCRDTQLSVRRTLAYSLHEVAKLL 413
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BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Match: A0A7S4NEK8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NEK8_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 1.000e-24
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 SSRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGN-KSKFGDSDTVLFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAKILGTEI 318
            +SRWVR +A+Q++G FIA+  G+++ +  L  +  M++   KSK GD      C++SFPGV  T+G DRW  +KE Y  LV+D Q KVRR+LSYS+H++A+I G EI
Sbjct:  223 ASRWVRTAAYQNIGPFIATFKGEDIDDDFLILFTEMISPKMKSKVGDPFISECCSFSFPGVFQTIGKDRWEQIKECYQNLVKDPQWKVRRSLSYSIHDIAQIAGPEI 329
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125256.5111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q54TV3_DICDI2.870e-3157.28Protein phosphatase 4 regulatory subunit 1 n=1 Tax... [more]
A0A7S0Z405_9CRYP2.000e-3052.83Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1IMG2_GUITC7.650e-3055.66Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
UPI00064506591.210e-2955.88hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151Z420_9MYCE4.860e-2852.43Protein phosphatase 4 regulatory subunit 1 n=1 Tax... [more]
F4PHM0_CAVFA9.030e-2853.92Protein phosphatase 4 regulatory subunit 1 n=1 Tax... [more]
D3AY02_POLPP1.340e-2754.90Protein phosphatase 4 regulatory subunit 1 n=1 Tax... [more]
A0A7S0QD95_9CRYP4.080e-2752.43Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A1Y1YIY5_9FUNG4.080e-2654.90ARM repeat-containing protein n=1 Tax=Basidiobolus... [more]
A0A7S4NEK8_9EUKA1.000e-2447.66Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125256contigM-pyrifera_M_contig125256:1..318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog44689.DDB0238105
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.regulatory subunit
EggNOG OGs3X8YD@554915,KOG0211@1,KOG0211@2759
Ec32 ortholog descriptionProtein phosphatase 4 regulatory subunit 1
Ec32 orthologEc-21_000820.1
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.6060197-CDS-M-pyrifera_M_contig125256:0..3181622815768.6060197-CDS-M-pyrifera_M_contig125256:0..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125256 1..318 -
1692277560.5344446-CDS-M-pyrifera_M_contig125256:0..3181692277560.5344446-CDS-M-pyrifera_M_contig125256:0..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125256 1..318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125256.5111.1prot_M-pyrifera_M_contig125256.5111.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125256 1..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125256.5111.1

>prot_M-pyrifera_M_contig125256.5111.1 ID=prot_M-pyrifera_M_contig125256.5111.1|Name=mRNA_M-pyrifera_M_contig125256.5111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
SSRWVRNSAFQHLGQFIASLSGQEVPEPLLDFYKGMVAGNKSKFGDSDTV
LFCAYSFPGVLLTVGPDRWPTLKETYFPLVRDLQVKVRRTLSYSLHEVAK
ILGTEI
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mRNA from alignment at M-pyrifera_M_contig125256:1..318-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125256.5111.1 ID=mRNA_M-pyrifera_M_contig125256.5111.1|Name=mRNA_M-pyrifera_M_contig125256.5111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig125256:1..318- (Macrocystis pyrifera P11B4 male)
TCGTCGCGGTGGGTGCGGAATTCGGCGTTCCAACACTTGGGACAGTTCAT
TGCGTCGCTCTCTGGCCAGGAGGTGCCAGAGCCGCTGCTGGATTTCTACA
AGGGAATGGTGGCCGGCAACAAGAGCAAATTCGGCGATAGTGACACAGTC
CTCTTCTGTGCCTACAGCTTTCCAGGTGTGCTCTTGACAGTGGGGCCGGA
TCGTTGGCCTACACTGAAAGAAACGTACTTTCCCCTCGTCCGTGACCTCC
AAGTGAAGGTGAGACGCACACTCTCGTACTCACTTCACGAGGTGGCCAAG
ATCCTCGGCACAGAGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125256:1..318-

>mRNA_M-pyrifera_M_contig125256.5111.1 ID=mRNA_M-pyrifera_M_contig125256.5111.1|Name=mRNA_M-pyrifera_M_contig125256.5111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig125256:1..318- (Macrocystis pyrifera P11B4 male)
TCGTCGCGGTGGGTGCGGAATTCGGCGTTCCAACACTTGGGACAGTTCAT
TGCGTCGCTCTCTGGCCAGGAGGTGCCAGAGCCGCTGCTGGATTTCTACA
AGGGAATGGTGGCCGGCAACAAGAGCAAATTCGGCGATAGTGACACAGTC
CTCTTCTGTGCCTACAGCTTTCCAGGTGTGCTCTTGACAGTGGGGCCGGA
TCGTTGGCCTACACTGAAAGAAACGTACTTTCCCCTCGTCCGTGACCTCC
AAGTGAAGGTGAGACGCACACTCTCGTACTCACTTCACGAGGTGGCCAAG
ATCCTCGGCACAGAGATCTCGTCGCGGTGGGTGCGGAATTCGGCGTTCCA
ACACTTGGGACAGTTCATTGCGTCGCTCTCTGGCCAGGAGGTGCCAGAGC
CGCTGCTGGATTTCTACAAGGGAATGGTGGCCGGCAACAAGAGCAAATTC
GGCGATAGTGACACAGTCCTCTTCTGTGCCTACAGCTTTCCAGGTGTGCT
CTTGACAGTGGGGCCGGATCGTTGGCCTACACTGAAAGAAACGTACTTTC
CCCTCGTCCGTGACCTCCAAGTGAAGGTGAGACGCACACTCTCGTACTCA
CTTCACGAGGTGGCCAAGATCCTCGGCACAGAGATC
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