mRNA_M-pyrifera_M_contig125239.5105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125239.5105.1
Unique NamemRNA_M-pyrifera_M_contig125239.5105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A7C1GFW1_9BACT (Reactive intermediate/imine deaminase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1GFW1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 6.170e-10
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    7 RAGAFVFVSGSGHLSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            +   F+FVSG G  +RD +GP  + G I ++T   +E+L+AVL DAG GLE++V+ T +L++M
Sbjct:   23 KTNGFLFVSGQGPFARDGSGP--IRGTIEEETRTTLENLKAVLADAGAGLEDVVKTTAFLSDM 83          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A2E7QG95_9PROT (2-aminomuconate deaminase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QG95_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 7.580e-10
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 YRRAGAFVFVSGSGHLSRDSA---------GPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            Y+R+G FVF+SG+     D++         G T +D  I  QT ACIE++R +L+ AGG LENLVE++T+L +M
Sbjct:   24 YKRSGPFVFISGTSARRSDNSIAGADADALGTTKLD--IGTQTKACIENIRDILKAAGGDLENLVEISTFLLSM 95          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A833IPX6_9GAMM (RidA family protein n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IPX6_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-9
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 YRRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            Y+RAG F+FVSG+           +  D  G T +D  IR QT A +E++RA+LE AG  L+++VEV++YL NM
Sbjct:   23 YKRAGDFIFVSGTSSRRPDNTFEGVEVDELGTTSLD--IRAQTIAVLENIRAILEAAGSSLDDVVEVSSYLVNM 94          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A7X0FWY3_9ACTN (2-aminomuconate deaminase n=7 Tax=Actinomadura TaxID=1988 RepID=A0A7X0FWY3_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 2.440e-9
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    4 RRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            RRAG  VFVSG+            S D+ G T +D  +R+QT A IE++R +LE AGGGL ++V VTTYL +M
Sbjct:   21 RRAGDLVFVSGTSSRRPDGTFAGASADAMGVTDLD--VREQTRAVIENIRDLLEAAGGGLSDVVSVTTYLVSM 91          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A0M8JHZ4_9SPHN (2-aminomuconate deaminase n=7 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A0M8JHZ4_9SPHN)

HSP 1 Score: 58.2 bits (139), Expect = 4.840e-9
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 YRRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            YRRAG FVFVSG+            S D+ G   +D  I +QT A IE++ A+L DAGG L ++V+VT++L NM
Sbjct:   26 YRRAGDFVFVSGTSSRRADNSFAGASADAFGTVSLD--IAEQTRAVIENIGAILADAGGSLADVVDVTSFLVNM 97          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A2V7Z741_9BACT (2-aminomuconate deaminase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Z741_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 5.110e-9
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 RRAGAFVFVSGSGHLSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            RR G  +F+SG G   R++     +  GI  QT ACIE+++A+LEDAG  LE +V+VT +L N+
Sbjct:   26 RRLGNLLFLSGIGPRHRETE---QIPEGIEAQTRACIENVKAILEDAGSSLEKVVDVTVFLTNI 86          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A2V7W4V7_9BACT (LigB domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7W4V7_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.600e-9
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 RRAGAFVFVSGSGHLSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            RR G F+F+SG G   +   G  P    I  QT ACIE++RAVLEDAG  LE +++VT YL +M
Sbjct:  350 RRVGNFLFLSGIGPR-KPVTGEIPGPNDIEVQTRACIENIRAVLEDAGSSLEKVLDVTVYLTDM 412          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A7W9MII3_9ACTN (2-aminomuconate deaminase n=2 Tax=Streptosporangium becharense TaxID=1816182 RepID=A0A7W9MII3_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 6.580e-9
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 RRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            RRAG FVFVSG+            S D+ G T +D  IR+QT A IE++R +L  AGG L + V VTTYL NM
Sbjct:   25 RRAGDFVFVSGTSSRRPDGSFAGASADAMGTTTLD--IREQTRAVIENIRDLLAAAGGELSDAVSVTTYLVNM 95          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A7W8A0A2_9ACTN (2-aminomuconate deaminase n=2 Tax=Nonomuraea TaxID=83681 RepID=A0A7W8A0A2_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 6.700e-9
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 YRRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            +RRAG  VFVSG+            S D  G T +D  IR+QT A IE+L  +L+ AGGGL ++V VTTYL +M
Sbjct:   25 FRRAGDLVFVSGTSSRRPDGTFAGASADEMGTTSLD--IREQTRAVIENLADILKAAGGGLADVVNVTTYLVSM 96          
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Match: A0A1E4JT90_9SPHN (2-aminomuconate deaminase n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4JT90_9SPHN)

HSP 1 Score: 57.8 bits (138), Expect = 6.950e-9
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 YRRAGAFVFVSGSGH---------LSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGGGLENLVEVTTYLANM 195
            YRRAG FVFVSG+            S D  G   +D  I +QT A IE++ A+L DAGG L ++V+VT++L NM
Sbjct:   26 YRRAGDFVFVSGTSSRRADNSFAGASADEYGTVSLD--IAEQTRAVIENIGAILADAGGSLADVVDVTSFLVNM 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125239.5105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1GFW1_9BACT6.170e-1044.44Reactive intermediate/imine deaminase n=1 Tax=Cand... [more]
A0A2E7QG95_9PROT7.580e-1044.592-aminomuconate deaminase n=1 Tax=Rhodospirillacea... [more]
A0A833IPX6_9GAMM1.600e-944.59RidA family protein n=1 Tax=Alkalilimnicola sp. S0... [more]
A0A7X0FWY3_9ACTN2.440e-947.952-aminomuconate deaminase n=7 Tax=Actinomadura Tax... [more]
A0A0M8JHZ4_9SPHN4.840e-945.952-aminomuconate deaminase n=7 Tax=Sphingomonadacea... [more]
A0A2V7Z741_9BACT5.110e-945.312-aminomuconate deaminase n=1 Tax=Acidobacteria ba... [more]
A0A2V7W4V7_9BACT5.600e-950.00LigB domain-containing protein n=1 Tax=Acidobacter... [more]
A0A7W9MII3_9ACTN6.580e-949.322-aminomuconate deaminase n=2 Tax=Streptosporangiu... [more]
A0A7W8A0A2_9ACTN6.700e-947.302-aminomuconate deaminase n=2 Tax=Nonomuraea TaxID... [more]
A0A1E4JT90_9SPHN6.950e-945.952-aminomuconate deaminase n=8 Tax=Alphaproteobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125239contigM-pyrifera_M_contig125239:2..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.29092-CDS-M-pyrifera_M_contig125239:1..1961622815768.29092-CDS-M-pyrifera_M_contig125239:1..196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125239 2..196 -
1692277560.3963175-CDS-M-pyrifera_M_contig125239:1..1961692277560.3963175-CDS-M-pyrifera_M_contig125239:1..196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125239 2..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125239.5105.1prot_M-pyrifera_M_contig125239.5105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125239 2..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125239.5105.1

>prot_M-pyrifera_M_contig125239.5105.1 ID=prot_M-pyrifera_M_contig125239.5105.1|Name=mRNA_M-pyrifera_M_contig125239.5105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
YRRAGAFVFVSGSGHLSRDSAGPTPVDGGIRQQTTACIESLRAVLEDAGG
GLENLVEVTTYLANM
back to top

mRNA from alignment at M-pyrifera_M_contig125239:2..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125239.5105.1 ID=mRNA_M-pyrifera_M_contig125239.5105.1|Name=mRNA_M-pyrifera_M_contig125239.5105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig125239:2..196- (Macrocystis pyrifera P11B4 male)
TATCGGCGTGCGGGTGCCTTCGTGTTTGTGTCGGGCTCTGGCCATCTTTC CAGGGACAGCGCCGGACCCACGCCCGTTGATGGCGGCATACGCCAACAGA CAACCGCATGCATTGAAAGCCTGCGAGCCGTTCTGGAGGACGCCGGGGGC GGATTGGAAAACCTGGTGGAGGTGACCACCTACCTTGCCAATATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125239:2..196-

>mRNA_M-pyrifera_M_contig125239.5105.1 ID=mRNA_M-pyrifera_M_contig125239.5105.1|Name=mRNA_M-pyrifera_M_contig125239.5105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig125239:2..196- (Macrocystis pyrifera P11B4 male)
TATCGGCGTGCGGGTGCCTTCGTGTTTGTGTCGGGCTCTGGCCATCTTTC
CAGGGACAGCGCCGGACCCACGCCCGTTGATGGCGGCATACGCCAACAGA
CAACCGCATGCATTGAAAGCCTGCGAGCCGTTCTGGAGGACGCCGGGGGC
GGATTGGAAAACCTGGTGGAGGTGACCACCTACCTTGCCAATATGTATCG
GCGTGCGGGTGCCTTCGTGTTTGTGTCGGGCTCTGGCCATCTTTCCAGGG
ACAGCGCCGGACCCACGCCCGTTGATGGCGGCATACGCCAACAGACAACC
GCATGCATTGAAAGCCTGCGAGCCGTTCTGGAGGACGCCGGGGGCGGATT
GGAAAACCTGGTGGAGGTGACCACCTACCTTGCCAATATG
back to top