mRNA_M-pyrifera_M_contig125231.5103.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125231.5103.1
Unique NamemRNA_M-pyrifera_M_contig125231.5103.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A4S4N4Y4_9APHY (Translationally-controlled tumor protein homolog n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A4S4N4Y4_9APHY)

HSP 1 Score: 89.4 bits (220), Expect = 2.220e-20
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 TDDELMSDASPFKEVDDVAYDVEAKFVIRGTGVDI-----PTNDEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            TDDE+ SDA P KE+DDV ++VE   V   +G DI     P+ +E    L++G  +V NIV +  L  TNF KK Y+ Y+KGYMK +   L+EKNP+R   F+K  
Sbjct:    9 TDDEMFSDAFPIKEIDDVVFEVECSLVTVKSGADIDIGANPSAEEQDEALEEGATQVNNIVHSFRLQSTNFDKKGYLGYLKGYMKAVKASLQEKNPERVEAFEKGA 114          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A267GN29_9PLAT (TCTP domain-containing protein n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GN29_9PLAT)

HSP 1 Score: 89.0 bits (219), Expect = 3.290e-20
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTGVD---IPTN---DEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQ 294
            DEL SD+ P+K VDD+A ++E K +     +D   I  N   +E G G DDG E  IN+V +H L+ET F KK Y+ Y+KGY+K+I + L+E NPDR   F+
Sbjct:   11 DELASDSYPYKYVDDIAIEIEGKMITVSNAIDDRMIGGNASAEEAGEGTDDGTESKINVVYSHQLVETQFDKKSYLAYLKGYLKRIEKKLEENNPDRIEAFK 112          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: F4PNV0_CAVFA (TCTP family protein 1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PNV0_CAVFA)

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-20
Identity = 53/109 (48.62%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTGV--DIPTND--------EDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            DEL SDA P KEV D+ Y+V  K V R   V  DI  ND        ED G  D G  +V N+VD+H L  TNF KK Y+ Y+KGYMK+I   L E NPDR   F+K  
Sbjct:   13 DELFSDAFPIKEVSDIVYEVTTKIVSRDLNVKVDIGANDSEEVEEGGEDTGVADAGVVKVNNLVDSHRLQVTNFDKKGYLTYLKGYMKEIEVYLAENNPDRVAAFKKGA 121          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A267EZB4_9PLAT (TCTP domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EZB4_9PLAT)

HSP 1 Score: 89.4 bits (220), Expect = 3.980e-20
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTGVD---IPTN---DEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQ 294
            DEL SD+ P+K VDD+A ++E K +     +D   I  N   +E G G DDG E  IN+V +H L+ET F KK Y+ Y+KGY+K+I + L+E NPDR   F+
Sbjct:   11 DELASDSYPYKYVDDIAIEIEGKMITVSNAIDDRMIGGNASAEEAGEGTDDGTESKINVVYSHQLVETQFDKKSYLAYLKGYLKRIEKKLEENNPDRVEAFK 112          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A8H7EUZ9_9FUNG (Translationally-controlled tumor protein homolog n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EUZ9_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 4.770e-20
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTG-VDIPTNDEDGGGLDDG----EERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            DE++SDA P KE+DD+AY+V+ K +    G VDI  N    GG D+G     + V N+V +  L+ET+F KK YMVYIKGYMK I   L++ NP+R   F+K  
Sbjct:   11 DEMVSDAFPVKEIDDIAYEVDCKMITITEGDVDIGANPSAEGGDDEGADSSSQTVNNVVHSFRLVETSFDKKSYMVYIKGYMKAIKAHLEKNNPERVPVFEKQA 114          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A286UNU8_9AGAM (Translationally-controlled tumor protein homolog n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UNU8_9AGAM)

HSP 1 Score: 86.7 bits (213), Expect = 2.560e-19
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTGVDI-----PTNDEDGGGL-DDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            DE++SDA P KEVDD+ ++V+ + ++   GVDI     P+ +E    L ++G E+VIN+V +H L  T+F KK Y+ Y+KGYMK++   L++ NPDR   F+K  
Sbjct:   11 DEMLSDAFPLKEVDDIVFEVDCQKIVVKPGVDIDIGANPSAEEQEEALQEEGAEQVINVVYSHRLQSTSFDKKGYLTYLKGYMKEVKTRLQQTNPDRVEAFEKGA 115          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: K5WX98_AGABU (Translationally-controlled tumor protein homolog n=3 Tax=Agaricus bisporus TaxID=5341 RepID=K5WX98_AGABU)

HSP 1 Score: 85.9 bits (211), Expect = 5.000e-19
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 TDDELMSDASPFKEVDDVAYDVEAKFVIRGTGVDI-----PTNDEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            T DE+ SDA PFKE+DDV ++V+ K +    GVD+     P+ ++    L++G  +V N+V +  L  T+F K  Y  Y+K YMK +S  LKE NP+RA+ F+K  
Sbjct:    9 TGDEMFSDAFPFKEIDDVVFEVDCKMISVKAGVDVNIGANPSAEDQEEALEEGTSQVNNVVQSFRLQTTSFDKSSYKTYLKSYMKAVSAKLKESNPERASAFEKKA 114          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: A0A060SN09_PYCCI (Translationally-controlled tumor protein homolog n=2 Tax=Trametes TaxID=5324 RepID=A0A060SN09_PYCCI)

HSP 1 Score: 85.9 bits (211), Expect = 5.620e-19
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 DELMSDASPFKEVDDVAYDVEAKFVIRGTGVDI----------PTNDEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            DE+ SDA P KEVDD+ Y+V+ + +    G D+          P+++E    L+DG + V N+V +  L  T F KK Y+ Y+KGYMK + + L+E NPDR   F+K  
Sbjct:   11 DEMFSDAFPIKEVDDIVYEVDCQMITVKPGADVDIGKSLERANPSSEEQDESLEDGAQTVNNVVYSFRLQSTQFDKKSYLTYLKGYMKAVKQYLQENNPDRVEAFEKGA 119          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: UPI001C79E5DE (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C79E5DE)

HSP 1 Score: 84.7 bits (208), Expect = 7.110e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 TDDELMSDASPFKEVDDVAYDVE-AKFVIRGTGVDI---PTNDEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            ++DE++SDA P K VDD+ Y V+ A  V++   V+I   P+ +E    L++G ++V N+V +  L +TNF KK Y+ Y+KGYMK I   L+EKNPDR   F+K  
Sbjct:    9 SEDEMISDAFPLKTVDDIVYQVDCAMIVVKDGDVNIGANPSAEEQEEALENGAQQVNNVVHSFRLHQTNFDKKTYLSYLKGYMKTIKTYLQEKNPDRVEAFEKGA 113          
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Match: M7X0G6_RHOT1 (Translationally-controlled tumor protein homolog n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7X0G6_RHOT1)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-18
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 TDDELMSDASPFKEVDDVAYDVE-AKFVIRGTGVDIPTN---DEDGGGLDDGEERVINIVDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV 303
            T+DEL+SDA   KEVDDV Y+ + A   I+   V+I  N   +E    L++GE+RV N+V +  L ET+F KK YM Y+KGYMK +   L+E NPDR   F+K  
Sbjct:    9 TNDELISDAYDLKEVDDVVYEADCAMITIKEGEVNIGANASAEEAEEALEEGEQRVNNVVHSFRLTETSFDKKSYMTYLKGYMKAVKAHLQESNPDRIPAFEKGA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125231.5103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4N4Y4_9APHY2.220e-2045.28Translationally-controlled tumor protein homolog n... [more]
A0A267GN29_9PLAT3.290e-2046.08TCTP domain-containing protein n=4 Tax=Macrostomum... [more]
F4PNV0_CAVFA3.800e-2048.62TCTP family protein 1 n=1 Tax=Cavenderia fascicula... [more]
A0A267EZB4_9PLAT3.980e-2046.08TCTP domain-containing protein n=1 Tax=Macrostomum... [more]
A0A8H7EUZ9_9FUNG4.770e-2047.12Translationally-controlled tumor protein homolog n... [more]
A0A286UNU8_9AGAM2.560e-1942.86Translationally-controlled tumor protein homolog n... [more]
K5WX98_AGABU5.000e-1941.51Translationally-controlled tumor protein homolog n... [more]
A0A060SN09_PYCCI5.620e-1939.45Translationally-controlled tumor protein homolog n... [more]
UPI001C79E5DE7.110e-1943.81uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
M7X0G6_RHOT11.380e-1846.67Translationally-controlled tumor protein homolog n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125231contigM-pyrifera_M_contig125231:40..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.6
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog5341.XP_007329338.1
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015631,GO:0019538,GO:0030154,GO:0030234,GO:0032502,GO:0032991,GO:0033554,GO:0034599,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042221,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048869,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071704,GO:0098772,GO:1901564,GO:1901566,GO:1901576,GO:1990624,GO:1990904
EggNOG free text desc.Belongs to the TCTP family
EggNOG OGs226WF@155619,3A0TB@33154,3NVEU@4751,3V0CC@5204,3W6XM@5338,KOG1727@1,KOG1727@2759
COG Functional cat.DZ
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons2
Model size303
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125231.5103.1prot_M-pyrifera_M_contig125231.5103.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125231 55..513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.1887848-UTR-M-pyrifera_M_contig125231:39..541622815768.1887848-UTR-M-pyrifera_M_contig125231:39..54Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125231 40..54 +
1692277560.341855-UTR-M-pyrifera_M_contig125231:39..541692277560.341855-UTR-M-pyrifera_M_contig125231:39..54Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125231 40..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.1988003-CDS-M-pyrifera_M_contig125231:54..2251622815768.1988003-CDS-M-pyrifera_M_contig125231:54..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125231 55..225 +
1692277560.3595219-CDS-M-pyrifera_M_contig125231:54..2251692277560.3595219-CDS-M-pyrifera_M_contig125231:54..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125231 55..225 +
1622815768.2117734-CDS-M-pyrifera_M_contig125231:396..5131622815768.2117734-CDS-M-pyrifera_M_contig125231:396..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125231 397..513 +
1692277560.3678534-CDS-M-pyrifera_M_contig125231:396..5131692277560.3678534-CDS-M-pyrifera_M_contig125231:396..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125231 397..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125231.5103.1

>prot_M-pyrifera_M_contig125231.5103.1 ID=prot_M-pyrifera_M_contig125231.5103.1|Name=mRNA_M-pyrifera_M_contig125231.5103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MSDASPFKEVDDVAYDVEAKFVIRGTGVDIPTNDEDGGGLDDGEERVINI
VDAHNLIETNFTKKQYMVYIKGYMKKISEILKEKNPDRATPFQKNV
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mRNA from alignment at M-pyrifera_M_contig125231:40..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125231.5103.1 ID=mRNA_M-pyrifera_M_contig125231.5103.1|Name=mRNA_M-pyrifera_M_contig125231.5103.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig125231:40..513+ (Macrocystis pyrifera P11B4 male)
ACAGATGACGAGCTCATGTCTGACGCCTCCCCCTTCAAGGAGGTCGACGA TGTCGCCTACGACGTCGAGGCCAAGTTCGTGATCCGCGGAACTGGTGTGG ACATCCCCACCAACGACGAGGACGGCGGTGGCCTCGACGACGGCGAGGAG CGTGTCATCAACATCGTTGACGCCCACAACCTCATCGTACGTGCCCCCCC CCTGGCCTGCAGCGCTACTATGGATAGGTGCAGTGAAGCAGGGCAGTGAG GGAGAGACGCGGGTCAGGCAAGAGAGAGAGAGTATGCGTGTGAGAGGAGC CAAGAGTTCATAGGGTGAGGTACGGGATGATCGACCAGCTGCTGACGGCT CTGGCAGGAGACCAACTTCACGAAGAAGCAGTACATGGTCTACATCAAGG GATACATGAAGAAGATCAGTGAGATCCTCAAGGAGAAGAACCCCGACCGC GCTACTCCCTTCCAGAAGAACGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125231:40..513+

>mRNA_M-pyrifera_M_contig125231.5103.1 ID=mRNA_M-pyrifera_M_contig125231.5103.1|Name=mRNA_M-pyrifera_M_contig125231.5103.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig125231:40..513+ (Macrocystis pyrifera P11B4 male)
ATGTCTGACGCCTCCCCCTTCAAGGAGGTCGACGATGTCGCCTACGACGT
CGAGGCCAAGTTCGTGATCCGCGGAACTGGTGTGGACATCCCCACCAACG
ACGAGGACGGCGGTGGCCTCGACGACGGCGAGGAGCGTGTCATCAACATC
GTTGACGCCCACAACCTCATCATGTCTGACGCCTCCCCCTTCAAGGAGGT
CGACGATGTCGCCTACGACGTCGAGGCCAAGTTCGTGATCCGCGGAACTG
GTGTGGACATCCCCACCAACGACGAGGACGGCGGTGGCCTCGACGACGGC
GAGGAGCGTGTCATCAACATCGTTGACGCCCACAACCTCATCGAGACCAA
CTTCACGAAGAAGCAGTACATGGTCTACATCAAGGGATACATGAAGAAGA
TCAGTGAGATCCTCAAGGAGAAGAACCCCGACCGCGCTACTCCCTTCCAG
AAGAACGTCGAGACCAACTTCACGAAGAAGCAGTACATGGTCTACATCAA
GGGATACATGAAGAAGATCAGTGAGATCCTCAAGGAGAAGAACCCCGACC
GCGCTACTCCCTTCCAGAAGAACGTC
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