mRNA_M-pyrifera_M_contig125063.5082.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517WEE5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEE5_9PLAN) HSP 1 Score: 191 bits (485), Expect = 1.060e-60 Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1
Query: 1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
+DL+PAVMIDGFDFAERRRGVKTEFCPNVAGFCP VS NLSWSG FLSCCALCQKWIQVT AGCF EQEVK DGFSGGCGALVRFV WCRFPVSRA
Sbjct: 1 MDLVPAVMIDGFDFAERRRGVKTEFCPNVAGFCPGVSQNLSWSGRFLSCCALCQKWIQVTGAGCFREQEVKTDGFSGGCGALVRFVSWCRFPVSRA 96
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: UPI00118A7A64 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118A7A64) HSP 1 Score: 189 bits (481), Expect = 1.060e-59 Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 1
Query: 1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
+DL+PA++IDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQ T AGCF EQE+KIDGFSGGC ALVRFV W RFPVSRA
Sbjct: 1 MDLVPAILIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQATGAGCFREQEMKIDGFSGGCAALVRFVAWYRFPVSRA 96
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7K8Y9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7K8Y9_9PLAN) HSP 1 Score: 181 bits (460), Expect = 1.530e-55 Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1
Query: 1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
+DL+PA+MIDGFDFAERRRGVKTEFCPNVAGFCP VSGNL+WSG FLSCCALC KWI AGCF EQ VKIDGFSG CGALVRFVCWC FP+SRA
Sbjct: 37 MDLLPAIMIDGFDFAERRRGVKTEFCPNVAGFCPGVSGNLTWSGRFLSCCALCLKWIDAIYAGCFREQGVKIDGFSGECGALVRFVCWCLFPISRA 132
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517PQ73_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQ73_9PLAN) HSP 1 Score: 93.2 bits (230), Expect = 6.390e-23 Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query: 1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLS 144
+DL+PA++IDGFDFAERRRGVKTEFCPNVAGFCP V+GNLSW G FLS
Sbjct: 1 MDLVPAILIDGFDFAERRRGVKTEFCPNVAGFCPGVTGNLSWYGRFLS 48
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A518A2Y4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A2Y4_9PLAN) HSP 1 Score: 71.6 bits (174), Expect = 5.660e-13 Identity = 50/125 (40.00%), Postives = 62/125 (49.60%), Query Frame = 1
Query: 10 MPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWC---------RFPVSRASQIGNRIRGGRSRSR*VYSVVGG 357
MPA+ ++ FD E GV+T+ CPNV+GFCP VSG LSW G FLS + QV E ++ RF C C P SRASQ+G++IR GR S V S GG
Sbjct: 26 MPAMPLEDFDSLEGDVGVQTKICPNVSGFCPVVSGILSWCGRFLS------QLGQVKRGE---HSEPVLESQVKSLKKRRRFRCSCVSGAACSSAGSPASRASQMGSKIRFGRCGSSSVCSDNGG 141
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7KFL9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFL9_9PLAN) HSP 1 Score: 66.2 bits (160), Expect = 1.540e-10 Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 37 DFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALC--QKWIQVTTAGCFCEQEVKIDGFSGGCGALV 249
+FAER GVKTEFCP+VAGFCP VSG LS SG +S AL ++ ++ + C VK G SGGCGALV
Sbjct: 93 NFAERDVGVKTEFCPDVAGFCPGVSGILSSSGRGVSWFALNIGRRTFRIGSE-CSGGNGVKSGGGSGGCGALV 164
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A518A471_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A471_9PLAN) HSP 1 Score: 64.3 bits (155), Expect = 4.990e-10 Identity = 47/115 (40.87%), Postives = 57/115 (49.57%), Query Frame = 2
Query: 29 MVLILLNGVGESRQNFVPMWPDFVLLCPGICPGLACFCP----------AVPCVKSGFK*QLRDVSVNRK*KSMVFQVDVGHWCVLFAGVAFPSRARARLGTGYGEAGVDQGEFI 343
M LIL NG SRQNFVPMWPDFV +CP LA CP +P SG K +++ S + +S+V V V A P RARARLG Y DQ +F+
Sbjct: 31 MSLILPNGRWGSRQNFVPMWPDFVRFLSRLCPNLAQICPYFAQFGERTFRMPSKCSGGK-RMKITSDSGASESLVRCVPVH---------ANPPRARARLGAAYDSGRSDQVQFV 135
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517PIH5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PIH5_9PLAN) HSP 1 Score: 63.2 bits (152), Expect = 8.630e-10 Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = -3
Query: 36 LARETGKRHQQ-TKRTSAPHPPEKPSIFTSCS-QKHPAVVT*IHF*HRAQQDRNKPDQDKFPDTAGQNPATLGQNSVLTPRRRSAKS 290
LAR G+ T TSAP PPE +FT +++ + + A QD+ +P QDK DT GQNPAT GQNSVLTPR S +S
Sbjct: 5 LARARGRLASTGTFNTSAPFPPETTPLFTLFPLEQYEPMRNVLPTLFTAHQDKPRPHQDKIHDTPGQNPATSGQNSVLTPRCHSTQS 91
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517WKL7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WKL7_9PLAN) HSP 1 Score: 64.3 bits (155), Expect = 1.070e-9 Identity = 46/108 (42.59%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 37 DFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFC--EQEVKIDGFSGGCGALVRFVCWCRFPVSRASQIGNRIRGGRSRSR*VYSVVG 354
D E R GVKTEFCPNVA FCP VSG LS SG LS AL W ++ G C E++VK +G GG V C RA R+R Y VG
Sbjct: 26 DSVEGRGGVKTEFCPNVARFCPGVSGILSHSGRGLSASAL--PWGRLFRRGAQCSGEKQVKSEGV-GGADVTVVLEMQCSEDAPRA----------RARRELTYDSVG 120
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7K9M7_9PLAN (Cytochrome c domain-containing protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K9M7_9PLAN) HSP 1 Score: 64.3 bits (155), Expect = 1.670e-9 Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 49 RRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTT---AGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRASQIGNRIRGGRSRSR*VYSVVG 354
RR GVKTEFCP+VAGFCP V+ LS G LS CAL W +T A CF Q VKI G G G L R V R +GN R R+R Y+ G
Sbjct: 43 RREGVKTEFCPDVAGFCPGVAWILSLFGRGLSWCAL--NWEGLTLRSGACCFGRQMVKIGG---GAGEL-------RSEVGRVPVLGNVPRA-RARRELPYASAG 134 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125063.5082.1 >prot_M-pyrifera_M_contig125063.5082.1 ID=prot_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp MPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCback to top mRNA from alignment at M-pyrifera_M_contig125063:2..371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125063.5082.1 ID=mRNA_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=370bp|location=Sequence derived from alignment at M-pyrifera_M_contig125063:2..371+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125063:2..371+ >mRNA_M-pyrifera_M_contig125063.5082.1 ID=mRNA_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig125063:2..371+ (Macrocystis pyrifera P11B4 male)back to top |