mRNA_M-pyrifera_M_contig12505.5080.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12505.5080.1
Unique NamemRNA_M-pyrifera_M_contig12505.5080.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.580e-55
Identity = 85/137 (62.04%), Postives = 108/137 (78.83%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            PLSS  R LLGFQVF+WNVACVGS+V+VTVFW +L+D   LTSTD+NAH LIA IM +DQ+LVATKFERKQM A+F++   Y+ +NI++FL   E E+VIY  MDWGE++  +  FA V+ FVL+P+ GLIHY V+R
Sbjct:   23 PLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFR 159
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 5.450e-53
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            PLSS  R LLGFQVF+WNVACVGS+V+VTVFW +L+D   LTSTD+NAH LIA +M +DQ+LVATKFERKQM A+F +   Y+ +NI++FL   E E+VIY  MDWGE++  +  FA V+ FVL+P+ GLIHY V+R
Sbjct:  112 PLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFR 248
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.930e-31
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            PL   V   L  Q+FTWNVAC+GS+ V  ++W+SLY G  +TS D+NAH LIA +MV DQMLVAT F  + M  A  +  TY+ +++LW+ +    +++IY  +DW  +   A  ++V  IFVLIP   ++HY ++R
Sbjct:  124 PLEQAV---LAIQLFTWNVACLGSLFVAIIYWSSLYTGTPITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFL---EQELIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIFR 254
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.840e-30
Identity = 53/137 (38.69%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            P+ + +R L   Q+  W+ AC+ S++VV++FW +LYDG  LT+ D  AH  +A IM+LDQ LVA +F+ + +    A+G  YI +N+ W+ +  + +++IY  +DW +N  GA ++A   I V  P++GL+H+G++R
Sbjct:  118 PVPAALRHL---QLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFR 251
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.390e-18
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            P+ + +R L   Q+  W+ AC+GS++VVT+FW      GAL               +LDQ LVA +F+ + +    A+G  Y+ +N+ W+ +  + +++IY  +DW +N  GA ++A   I V  P++GL+H G++R
Sbjct:   14 PVPAVLRHL---QLVLWSTACIGSLIVVTIFW------GAL---------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFR 126
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BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-12
Identity = 37/137 (27.01%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:    1 PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHALIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVIYSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR 411
            P+    R+L   Q  +W + C+ S+VV++VFW ++Y+     ++   +  ++A++M+LDQ L+AT+ + K       +   YI +N++++      ++V +   DW E    A L+  +I+   +P +  +H  VYR
Sbjct:  128 PVPCYFRWL---QHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYR 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12505.5080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G735_ECTSI9.580e-5562.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMZ5_9PHAE5.450e-5361.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G736_ECTSI2.930e-3143.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JSI9_9PHAE9.840e-3038.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G734_ECTSI5.390e-1832.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G733_ECTSI1.110e-1227.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12505contigM-pyrifera_M_contig12505:206..1614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionROST domain membrane protein
Ec32 orthologEc-01_011190.1
Exons3
Model size411
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12505.5080.1prot_M-pyrifera_M_contig12505.5080.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12505 206..1614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.8534606-CDS-M-pyrifera_M_contig12505:205..4481622815766.8534606-CDS-M-pyrifera_M_contig12505:205..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 206..448 -
1692277559.6829708-CDS-M-pyrifera_M_contig12505:205..4481692277559.6829708-CDS-M-pyrifera_M_contig12505:205..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 206..448 -
1622815766.864314-CDS-M-pyrifera_M_contig12505:964..10271622815766.864314-CDS-M-pyrifera_M_contig12505:964..1027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 965..1027 -
1692277559.6937964-CDS-M-pyrifera_M_contig12505:964..10271692277559.6937964-CDS-M-pyrifera_M_contig12505:964..1027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 965..1027 -
1622815766.874022-CDS-M-pyrifera_M_contig12505:1509..16141622815766.874022-CDS-M-pyrifera_M_contig12505:1509..1614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 1510..1614 -
1692277559.7126932-CDS-M-pyrifera_M_contig12505:1509..16141692277559.7126932-CDS-M-pyrifera_M_contig12505:1509..1614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12505 1510..1614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12505.5080.1

>prot_M-pyrifera_M_contig12505.5080.1 ID=prot_M-pyrifera_M_contig12505.5080.1|Name=mRNA_M-pyrifera_M_contig12505.5080.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
PLSSCVRFLLGFQVFTWNVACVGSIVVVTVFWTSLYDGGALTSTDINAHA
LIAVIMVLDQMLVATKFERKQMRAAFAYGATYITWNILWFLVGTESEKVI
YSTMDWGENLEGAILFAVVIIFVLIPVYGLIHYGVYR
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mRNA from alignment at M-pyrifera_M_contig12505:206..1614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12505.5080.1 ID=mRNA_M-pyrifera_M_contig12505.5080.1|Name=mRNA_M-pyrifera_M_contig12505.5080.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1409bp|location=Sequence derived from alignment at M-pyrifera_M_contig12505:206..1614- (Macrocystis pyrifera P11B4 male)
CCGCTGTCCAGTTGCGTCCGCTTCCTTTTGGGTTTCCAGGTCTTCACCTG
GAACGTGGCCTGCGTTGGCTCCATCGTCGTCGTCACCGTCTTTTGGACGA
GCCTGGTAAGGATTGATGACTGACTTTGACCCATGCATGGATGGAAACGT
AGGCTAAAGAAATAGCAACTTCGGTCTTGCTGATGTTAGGTTGCATCGTG
CGCGATTTGTAGTTTTCCTCCTGTATTGGCCAAAGTCGGTTGGCGTTGTC
CATAGAGTCGGGCTTGGCGTGCTTGCTACGTAAGTTGTTGAGGGGTGGGA
CCTGTTCGTAGCCGCGGCAGACTACAGAGCCGTCTCTTGCCTGAAATGAC
ACAGTACAACACGTGCTCCATGACCACGGTGGTCATTTGCGGCGGCACGA
GAGTTTTAACTTTTTGGACGCAGTAGAGTGTCACTGATCGCTGTATACTG
CTGTGGGGTTTTGCTGATACCTTGCATTTCAGTGCCTGGTATGAAATTCT
TGCGAATTCTGACTACCCTCCCGTTCCCCGTCGTCAATGCCGATACCCTG
ACCCTGTTGTCCTTGCACTGCTCGCATTGCTTTGCAGTACGACGGCGGCG
CGCTCACATCGACTGACATCAATGCCCATGCTCTTATTGCTGTTATAATG
GTAAGCAATCGCCAGGAGAGGACCATCCATACTCGCAGACAAGCACAACT
GCCATGCTTACCCCCCTTAAGGAGTGCAGTACCGTTTGGGGTGCGATCTG
GTTGGACTTGCACTCGGATACTGTTTGCAATACCGCAGTAAAAGGGCCAA
CCTTGAAGTGCAACCGAAAAATAAGGAGGACGGACACGCGTTCCCATCTT
CCCGCGTTTTTTTTTTGCGTGAAATGTTAGTCTGTCACGCTCAAACGTGT
GTACCTGGTACATATTTGGCGACCGCTGCTTCCGCTGCCTTGGTGTGCGT
GCATGTTACGCCGCTGCTTCCGCGATACCAGGTATAGCTTTTGCCTGTAG
CTATGTATTTGAGACAATAGCTCCCACGATGTTGCGGTGGTGGGATTTTC
ACGTAGTGCGTTGTGAAAAAATGTCTCGAGTAGTGTTTGATCTCGCCCGG
CCTGGAAGTTGCCTGGCCTCACGCAGCCACTTTCGCGTTCCTGCTTTTCT
GTGAACACCGGTGTAGGTGCTTGACCAAATGCTTGTGGCGACCAAGTTCG
AGCGGAAGCAGATGCGGGCTGCCTTTGCTTACGGCGCCACCTATATAACC
TGGAACATCTTATGGTTCCTTGTTGGGACCGAGAGCGAGAAGGTCATCTA
CAGTACGATGGACTGGGGTGAAAACCTTGAGGGGGCCATTCTATTCGCTG
TGGTCATCATCTTCGTCCTGATACCTGTGTACGGCTTGATCCACTATGGC
GTGTACAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12505:206..1614-

>mRNA_M-pyrifera_M_contig12505.5080.1 ID=mRNA_M-pyrifera_M_contig12505.5080.1|Name=mRNA_M-pyrifera_M_contig12505.5080.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig12505:206..1614- (Macrocystis pyrifera P11B4 male)
CCGCTGTCCAGTTGCGTCCGCTTCCTTTTGGGTTTCCAGGTCTTCACCTG
GAACGTGGCCTGCGTTGGCTCCATCGTCGTCGTCACCGTCTTTTGGACGA
GCCTGCCGCTGTCCAGTTGCGTCCGCTTCCTTTTGGGTTTCCAGGTCTTC
ACCTGGAACGTGGCCTGCGTTGGCTCCATCGTCGTCGTCACCGTCTTTTG
GACGAGCCTGTACGACGGCGGCGCGCTCACATCGACTGACATCAATGCCC
ATGCTCTTATTGCTGTTATAATGTACGACGGCGGCGCGCTCACATCGACT
GACATCAATGCCCATGCTCTTATTGCTGTTATAATGGTGCTTGACCAAAT
GCTTGTGGCGACCAAGTTCGAGCGGAAGCAGATGCGGGCTGCCTTTGCTT
ACGGCGCCACCTATATAACCTGGAACATCTTATGGTTCCTTGTTGGGACC
GAGAGCGAGAAGGTCATCTACAGTACGATGGACTGGGGTGAAAACCTTGA
GGGGGCCATTCTATTCGCTGTGGTCATCATCTTCGTCCTGATACCTGTGT
ACGGCTTGATCCACTATGGCGTGTACAGGGTGCTTGACCAAATGCTTGTG
GCGACCAAGTTCGAGCGGAAGCAGATGCGGGCTGCCTTTGCTTACGGCGC
CACCTATATAACCTGGAACATCTTATGGTTCCTTGTTGGGACCGAGAGCG
AGAAGGTCATCTACAGTACGATGGACTGGGGTGAAAACCTTGAGGGGGCC
ATTCTATTCGCTGTGGTCATCATCTTCGTCCTGATACCTGTGTACGGCTT
GATCCACTATGGCGTGTACAGG
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