mRNA_M-pyrifera_M_contig125007.5075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125007.5075.1
Unique NamemRNA_M-pyrifera_M_contig125007.5075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125007.5075.1 vs. uniprot
Match: A0A7S4MAS8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MAS8_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 3.510e-24
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 VVKQAVQGLLHLAKRREALRPVVMLKLLQVINEPRIYRSNPRRFAVRSLGHLCYADVQLVAPSVDLL 201
            +V+QA+QGL+HL+K+R  LRP VMLK+LQVIN PR+YRS+PRRFAVR +GH+   D  LV PSV+LL
Sbjct:   38 IVRQAIQGLIHLSKQRPTLRPQVMLKILQVINSPRVYRSHPRRFAVRGIGHIATTDESLVTPSVELL 104
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BLAST of mRNA_M-pyrifera_M_contig125007.5075.1 vs. uniprot
Match: A0A2P6MNV2_9EUKA (C3H1-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MNV2_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.860e-13
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 VVKQAVQGLLHLAKRREALRPVVMLKLLQVINEPRIYRSNPRRFAVRSLGHLCYADVQLVAPSVDLL 201
            +   A+QGL+ L   R+ LRP+ + K+L+VI EP++YRSNPRR+AVR++  L Y D +LV P++ LL
Sbjct:   80 ITTSAIQGLVCLTSCRQELRPLAVSKVLKVIQEPKVYRSNPRRYAVRAISQLTYTDEELVQPALLLL 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125007.5075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4MAS8_9EUKA3.510e-2465.67Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A2P6MNV2_9EUKA3.860e-1349.25C3H1-type domain-containing protein n=1 Tax=Planop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125007contigM-pyrifera_M_contig125007:155..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.6595821-CDS-M-pyrifera_M_contig125007:154..3551622815766.6595821-CDS-M-pyrifera_M_contig125007:154..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125007 155..355 +
1692277559.6026802-CDS-M-pyrifera_M_contig125007:154..3551692277559.6026802-CDS-M-pyrifera_M_contig125007:154..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125007 155..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125007.5075.1prot_M-pyrifera_M_contig125007.5075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125007 155..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125007.5075.1

>prot_M-pyrifera_M_contig125007.5075.1 ID=prot_M-pyrifera_M_contig125007.5075.1|Name=mRNA_M-pyrifera_M_contig125007.5075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
VVKQAVQGLLHLAKRREALRPVVMLKLLQVINEPRIYRSNPRRFAVRSLG
HLCYADVQLVAPSVDLL
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mRNA from alignment at M-pyrifera_M_contig125007:155..355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125007.5075.1 ID=mRNA_M-pyrifera_M_contig125007.5075.1|Name=mRNA_M-pyrifera_M_contig125007.5075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig125007:155..355+ (Macrocystis pyrifera P11B4 male)
GTGGTGAAGCAGGCGGTGCAGGGGCTGCTGCACCTGGCGAAGCGGCGGGA
GGCCCTGCGGCCGGTGGTGATGCTCAAGCTGCTGCAGGTGATCAACGAGC
CGCGCATCTACCGCTCCAACCCACGCCGCTTTGCAGTGCGCAGCCTGGGC
CATCTGTGCTACGCAGACGTCCAGCTGGTGGCGCCCAGCGTCGACCTGCT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125007:155..355+

>mRNA_M-pyrifera_M_contig125007.5075.1 ID=mRNA_M-pyrifera_M_contig125007.5075.1|Name=mRNA_M-pyrifera_M_contig125007.5075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig125007:155..355+ (Macrocystis pyrifera P11B4 male)
GTGGTGAAGCAGGCGGTGCAGGGGCTGCTGCACCTGGCGAAGCGGCGGGA
GGCCCTGCGGCCGGTGGTGATGCTCAAGCTGCTGCAGGTGATCAACGAGC
CGCGCATCTACCGCTCCAACCCACGCCGCTTTGCAGTGCGCAGCCTGGGC
CATCTGTGCTACGCAGACGTCCAGCTGGTGGCGCCCAGCGTCGACCTGCT
CGTGGTGAAGCAGGCGGTGCAGGGGCTGCTGCACCTGGCGAAGCGGCGGG
AGGCCCTGCGGCCGGTGGTGATGCTCAAGCTGCTGCAGGTGATCAACGAG
CCGCGCATCTACCGCTCCAACCCACGCCGCTTTGCAGTGCGCAGCCTGGG
CCATCTGTGCTACGCAGACGTCCAGCTGGTGGCGCCCAGCGTCGACCTGC
TC
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