mRNA_M-pyrifera_M_contig124995.5071.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig124995.5071.1
Unique Name	mRNA_M-pyrifera_M_contig124995.5071.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A356VIH6_9GAMM (Uncharacterized protein n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A356VIH6_9GAMM)

HSP 1 Score: 208 bits (529), Expect = 1.080e-66
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 324
            RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP
Sbjct:   92 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 199

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A2E7C1Y8_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C1Y8_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 1.020e-64
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 324
            RLE+EPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQ T EMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP
Sbjct:   92 RLELEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQFTDEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 199

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A6C0U7D5_9GAMM (Uncharacterized protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U7D5_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 1.570e-41
Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 324
            RLE    AQWEADIAIAYL M P+SPF+D +AA  +++RL   L A+MQVHPT LL+RD+L +F +++RHI DLE+SNATL+EDL+KREEAIKRLRELTLG SRA +P
Sbjct:   88 RLESSAEAQWEADIAIAYLSMSPNSPFFDREAASKSYQRLAKALRADMQVHPTTLLLRDALESFVVMHRHIEDLENSNATLKEDLEKREEAIKRLRELTLGQSRANRP 195

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A5C9A7B9_9GAMM (Uncharacterized protein n=2 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9A7B9_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 1.650e-35
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQ 321
            RLE  P A WEA I IA+  M+  SPF D +A+  ++RRL  QLT EM+VHPT+LLMRD+L +FA+++RHI+DLE++NATL+EDL+KREEA+KRLRELTLG   A Q
Sbjct:   99 RLEDSPEAAWEAGIGIAFASMVSSSPFLDPEASRKSWRRLNKQLTPEMKVHPTSLLMRDALESFAMMDRHITDLENNNATLKEDLEKREEALKRLRELTLGQRGARQ 205

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A5C8ZX95_9GAMM (Uncharacterized protein n=2 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C8ZX95_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 5.640e-35
Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQ 321
            RLE  P A+WEA I IA++ M+  SPF D +A+  ++RRL  +LT EM+VHPT+L+MRD+L +FA+++RHIS+LES+N+ L+EDLQKREEA+KRLRELTLG   A Q
Sbjct:   93 RLESSPEAEWEAGIGIAFVSMVSSSPFLDPEASRKSWRRLNKELTPEMKVHPTSLIMRDALESFAMMDRHISELESNNSMLQEDLQKREEALKRLRELTLGQRGARQ 199

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A7W2TXJ5_9GAMM (Uncharacterized protein n=2 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TXJ5_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 7.200e-35
Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLG 303
            RLE  P + WE+ IAIAY+ MLP SPF+D +AA  T+R+L  QL  +MQVH  +LLMR SL  F +L+RHI+DLE+SN+TL++DL KREEA+KRLRELTLG
Sbjct:  102 RLESSPESDWESGIAIAYISMLPSSPFFDAEAARKTYRQLNKQLNPQMQVHEKSLLMRQSLETFVILDRHIADLEASNSTLKDDLHKREEALKRLRELTLG 202

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: UPI001F4EBD26 (hypothetical protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI001F4EBD26)

HSP 1 Score: 126 bits (317), Expect = 1.780e-34
Identity = 63/107 (58.88%), Postives = 86/107 (80.37%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQ 321
            RLE  P A+WEA I IA++ M+  SPF D +A+  ++RRL  +LT +M+VHPT+L+MRD+L +FA+++RHIS+LES+N+ L+EDLQKREEA+KRLRELTLG   A Q
Sbjct:   97 RLESSPEAEWEAGIGIAFVSMVSSSPFLDPEASRKSWRRLNKELTPDMKVHPTSLIMRDALESFAMMDRHISELESNNSMLQEDLQKREEALKRLRELTLGQRGARQ 203

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: UPI0019D332D6 (hypothetical protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D332D6)

HSP 1 Score: 123 bits (309), Expect = 2.880e-33
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQ 321
            RLE  P A WEA I IAY+ MLP SPF+D +AA  ++  L A  +  MQVH  +LLMRDSL AF LL+RHI+ LE+SNATL+EDL KREEA+KRLRELTLG   A Q
Sbjct:   97 RLESSPEADWEAAIGIAYVSMLPGSPFFDPEAARTSWGSLEAAYSGSMQVHEQSLLMRDSLEAFMLLDRHITALEASNATLQEDLAKREEALKRLRELTLGQRGARQ 203

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: UPI0019A04067 (Uncharacterized protein n=2 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI0019A04067)

HSP 1 Score: 118 bits (296), Expect = 3.500e-31
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQVHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLG 303
            RLE  P A+WEADI IA++ MLP+SPF++ + A   +R L  QLT +MQVH  A LM D+LA F+LL+R + DLE  N+ L EDL+KREEA+KRLRELTLG
Sbjct:  110 RLEKTPEARWEADIGIAFVSMLPNSPFFNAEEARKAWRELNKQLTPDMQVHDKARLMNDALAGFSLLDRRVKDLEDDNSMLSEDLEKREEALKRLRELTLG 210

[Close]

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Match: A0A2D5F9N0_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5F9N0_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 4.500e-31
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 1

Query:    1 RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQ-VHPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTLGPSRAVQP 324
            RLE  P A WEAD+A+A++ MLPDSPFYD DA  A     +AQL+   +  H +A+LMR +L +FA+++RH+ DLE  N+TL +DL+KREEAIKRLRELTLG S A +P
Sbjct:   93 RLEGSPLAHWEADVALAWVSMLPDSPFYDRDAVAAA----LAQLSGPPEGAHASAVLMRQALQSFAVMHRHLQDLEQVNSTLEQDLEKREEAIKRLRELTLGQSGAARP 197

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig124995.5071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A356VIH6_9GAMM	1.080e-66	100.00	Uncharacterized protein n=6 Tax=Gammaproteobacteri...	[more]
A0A2E7C1Y8_9GAMM	1.020e-64	97.22	Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1...	[more]
A0A6C0U7D5_9GAMM	1.570e-41	66.67	Uncharacterized protein n=1 Tax=Kineobactrum salin...	[more]
A0A5C9A7B9_9GAMM	1.650e-35	61.68	Uncharacterized protein n=2 Tax=Parahaliea maris T...	[more]
A0A5C8ZX95_9GAMM	5.640e-35	59.81	Uncharacterized protein n=2 Tax=Parahaliea aestuar...	[more]
A0A7W2TXJ5_9GAMM	7.200e-35	62.38	Uncharacterized protein n=2 Tax=Sediminihaliea alb...	[more]
UPI001F4EBD26	1.780e-34	58.88	hypothetical protein n=1 Tax=Parahaliea mediterran...	[more]
UPI0019D332D6	2.880e-33	62.62	hypothetical protein n=1 Tax=Parahaliea mediterran...	[more]
UPI0019A04067	3.500e-31	59.41	Uncharacterized protein n=2 Tax=Halioglobus pacifi...	[more]
A0A2D5F9N0_9GAMM	4.500e-31	56.88	Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig124995	contig	M-pyrifera_M_contig124995:189..515 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	209.9
Seed ortholog evalue	5.9e-52
Seed eggNOG ortholog	1121937.AUHJ01000002_gene3398
Hectar predicted targeting category	other localisation
EggNOG OGs	1NQVU@1224,1SJTY@1236,2CG08@1,33SZ8@2
Best tax level	Gammaproteobacteria
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	327
Cds size	327
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815766.4730718-CDS-M-pyrifera_M_contig124995:188..515	1622815766.4730718-CDS-M-pyrifera_M_contig124995:188..515	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig124995 189..515 -
1692277559.5200324-CDS-M-pyrifera_M_contig124995:188..515	1692277559.5200324-CDS-M-pyrifera_M_contig124995:188..515	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig124995 189..515 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig124995.5071.1	prot_M-pyrifera_M_contig124995.5071.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig124995 189..515 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig124995:189..515-
coding sequence from alignment at M-pyrifera_M_contig124995:189..515-

protein sequence of mRNA_M-pyrifera_M_contig124995.5071.1

>prot_M-pyrifera_M_contig124995.5071.1 ID=prot_M-pyrifera_M_contig124995.5071.1|Name=mRNA_M-pyrifera_M_contig124995.5071.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
RLEVEPAAQWEADIAIAYLGMLPDSPFYDHDAAEATFRRLVAQLTAEMQV
HPTALLMRDSLAAFALLNRHISDLESSNATLREDLQKREEAIKRLRELTL
GPSRAVQP*

mRNA from alignment at M-pyrifera_M_contig124995:189..515-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig124995.5071.1 ID=mRNA_M-pyrifera_M_contig124995.5071.1|Name=mRNA_M-pyrifera_M_contig124995.5071.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig124995:189..515- (Macrocystis pyrifera P11B4 male)
CGGCTGGAGGTGGAGCCCGCCGCGCAGTGGGAGGCGGATATCGCCATTGC
CTATCTGGGCATGCTGCCGGATAGCCCGTTCTACGACCACGATGCGGCCG
AGGCGACCTTCCGTCGATTGGTGGCGCAGCTGACCGCAGAAATGCAGGTG
CACCCCACGGCACTATTGATGCGCGACTCACTGGCGGCCTTTGCGCTGCT
CAACCGGCACATCTCCGACCTGGAAAGCAGCAACGCGACGCTGCGTGAAG
ATCTGCAAAAACGCGAGGAGGCTATCAAGCGTTTGCGGGAGCTGACGCTG
GGGCCTTCGCGGGCAGTTCAACCGTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124995:189..515-

>mRNA_M-pyrifera_M_contig124995.5071.1 ID=mRNA_M-pyrifera_M_contig124995.5071.1|Name=mRNA_M-pyrifera_M_contig124995.5071.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig124995:189..515- (Macrocystis pyrifera P11B4 male)
CGGCTGGAGGTGGAGCCCGCCGCGCAGTGGGAGGCGGATATCGCCATTGC
CTATCTGGGCATGCTGCCGGATAGCCCGTTCTACGACCACGATGCGGCCG
AGGCGACCTTCCGTCGATTGGTGGCGCAGCTGACCGCAGAAATGCAGGTG
CACCCCACGGCACTATTGATGCGCGACTCACTGGCGGCCTTTGCGCTGCT
CAACCGGCACATCTCCGACCTGGAAAGCAGCAACGCGACGCTGCGTGAAG
ATCTGCAAAAACGCGAGGAGGCTATCAAGCGTTTGCGGGAGCTGACGCTG
GGGCCTTCGCGGGCAGTTCAACCGTAACGGCTGGAGGTGGAGCCCGCCGC
GCAGTGGGAGGCGGATATCGCCATTGCCTATCTGGGCATGCTGCCGGATA
GCCCGTTCTACGACCACGATGCGGCCGAGGCGACCTTCCGTCGATTGGTG
GCGCAGCTGACCGCAGAAATGCAGGTGCACCCCACGGCACTATTGATGCG
CGACTCACTGGCGGCCTTTGCGCTGCTCAACCGGCACATCTCCGACCTGG
AAAGCAGCAACGCGACGCTGCGTGAAGATCTGCAAAAACGCGAGGAGGCT
ATCAAGCGTTTGCGGGAGCTGACGCTGGGGCCTTCGCGGGCAGTTCAACC
GTAA