prot_M-pyrifera_M_contig12493.5069.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12493.5069.1
Unique Nameprot_M-pyrifera_M_contig12493.5069.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length161
Homology
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 5.750e-79
Identity = 120/132 (90.91%), Postives = 128/132 (96.97%), Query Frame = 0
Query:   30 PPDAFALTGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            PPDAFAL GEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKV+P+RDQVHVDGNRV MRP SE+KWVALNKPKGVICTVSDELGRPTAV+++PRG EMRLVPVGRLDRDSCGLLL+TNENSW+
Sbjct:   25 PPDAFALGGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVASIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWI 156          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 4.790e-78
Identity = 120/132 (90.91%), Postives = 127/132 (96.21%), Query Frame = 0
Query:   30 PPDAFALTGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            PPDAFAL GEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKV+P+RDQVHVDGNRV MRP SE+KWVALNKPKGVICTVSDELGRPTAV ++PRG EMRLVPVGRLDRDSCGLLL+TNENSW+
Sbjct:  103 PPDAFALGGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVGSIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWI 234          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.520e-49
Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 0
Query:   32 DAFALTGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            D   L   ERL K L+HAG+DSRRQCEQMILDGRVRVNGK+V  LG +VDP++D + VDG +V +R   E  WVA++KPKGVI + +DELGR T V  +P    MRL+PVGRLDRDS GLLL+TN+N+WV
Sbjct:   31 DQLRLGSSERLHKVLAHAGVDSRRQCEQMILDGRVRVNGKIVSSLGTRVDPRKDDLLVDGQKVALRSREETAWVAIHKPKGVITSTNDELGRRTVVDLIPGADRMRLLPVGRLDRDSAGLLLLTNDNAWV 160          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A0G4HIW2_9ALVE (S4 domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HIW2_9ALVE)

HSP 1 Score: 155 bits (392), Expect = 2.910e-42
Identity = 68/127 (53.54%), Postives = 99/127 (77.95%), Query Frame = 0
Query:   35 ALTGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            ++  +ERLQK +S +G+ SRR  E +I +GRVRVNG++VK++G +V+P+ DQ+ VDG R+ MRP SE+KW+ L+KPKG ICT++DE  R + +  VP    +RL+PVGRLDRDS GL+L+TN+N+W+
Sbjct:  136 SVADKERLQKVISRSGISSRRAAEDLIEEGRVRVNGRVVKQMGTRVNPRLDQIQVDGKRISMRPPSEIKWILLHKPKGYICTMADERDRKSVLDLVPFASRLRLLPVGRLDRDSSGLILLTNDNAWL 262          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A0G4ETA8_VITBC (S4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETA8_VITBC)

HSP 1 Score: 152 bits (383), Expect = 2.730e-41
Identity = 71/122 (58.20%), Postives = 94/122 (77.05%), Query Frame = 0
Query:   40 ERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            ERLQK +S AG+ SRR  E+MILDGRVRVNG +V +LGVKVD   D+V VDG ++ +RP  E+KW+A++KPKG IC+++D+  R T    VP  + +RL+PVGRLDRDS GLLL+TN+N W+
Sbjct:  137 ERLQKVISRAGIASRRAAEEMILDGRVRVNGVVVTDLGVKVDALGDRVTVDGRKIAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWL 258          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A7S2WX07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX07_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.280e-41
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 0
Query:   41 RLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSWV 161
            RLQK LSHAG+ SRR+ E+ I DGRV VN ++V ELG KVDP++D+V VDG  V  RP  E++WVA+ KPKGV+CT+ DE  R T + A+P     RL+PVGRLDR+S GLLL+TN+NSW+
Sbjct:   92 RLQKLLSHAGVCSRREAERYIEDGRVTVNERLVTELGTKVDPQKDRVTVDGELVSQRPVEEIRWVAMYKPKGVVCTMEDEKDRKTVMDALPGASRARLLPVGRLDRNSAGLLLLTNDNSWL 212          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A3E0KMJ0_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3E0KMJ0_9FIRM)

HSP 1 Score: 131 bits (329), Expect = 5.280e-35
Identity = 69/118 (58.47%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   40 ERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNE 157
            ERLQK+++  G+ SRR CEQ+I+ GRV+VNG+ V+ELGVKVDP RD+V VDG    +RP S++ +  LNKP G + TVSD  GRPT +S VP   E RL PVGRLD D+ GLLL+TN+
Sbjct:    4 ERLQKYMARCGVASRRACEQLIVAGRVQVNGRTVRELGVKVDPDRDEVRVDGR--VIRPPSKLLYYMLNKPAGYVTTVSDPQGRPTVMSLVP--SEDRLYPVGRLDLDTEGLLLLTND 117          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A7S0AM87_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AM87_9DINO)

HSP 1 Score: 138 bits (347), Expect = 7.340e-35
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 0
Query:   37 TGEERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNENSW 160
            TGE  L KFLSHAG  SRR+  +++L GRV++NG++V+++  KVDPK+D+V +DG R  ++   E+ W+ LNKPKGVI T  D  GR T +  VP  K+ RL+PVGR+DR++ GLLL+TN+  W
Sbjct:  259 TGEVWLNKFLSHAGACSRRKVAELVLQGRVQINGEVVQDICTKVDPKKDKVFLDGQRKELKTLGEIIWIMLNKPKGVISTFEDSEGRKTVMDLVPFAKKRRLIPVGRIDRNAAGLLLLTNDYEW 382          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: UPI0019587887 (rRNA pseudouridine synthase n=1 Tax=Desulforadius tongensis TaxID=1216062 RepID=UPI0019587887)

HSP 1 Score: 129 bits (325), Expect = 2.980e-34
Identity = 65/118 (55.08%), Postives = 91/118 (77.12%), Query Frame = 0
Query:   40 ERLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNE 157
            ERLQKFL+HAG+ SRR+CE++IL+GRV+VNGK+V+ELG K+DP +D+V VDG   +++   +  ++ +NKP+G + TVSDE GR T +  +   KE R+ PVGRLD DS GLLL+TN+
Sbjct:    2 ERLQKFLAHAGVASRRKCEELILEGRVKVNGKVVRELGTKIDPDKDKVQVDGR--WIKQKEKYVYLMMNKPRGYVSTVSDERGRKTVMDLLKDVKE-RVYPVGRLDYDSEGLLLLTND 116          
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Match: A0A140L426_9FIRM (Pseudouridine synthase n=4 Tax=Thermosediminibacteraceae TaxID=2770093 RepID=A0A140L426_9FIRM)

HSP 1 Score: 128 bits (321), Expect = 7.540e-34
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0
Query:   41 RLQKFLSHAGLDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGN--RVFMRPSSEVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCGLLLMTNE 157
            RLQKFL+ AG+ SRR CE +ILDGRV+VNGK+VKELG+KVDP  D+V VDG   R+ M+P     ++ +NKPKGV+ TV D  GRPT +  +   KE R+ PVGRLD+D+ GLL++TN+
Sbjct:    4 RLQKFLAMAGIASRRACETLILDGRVQVNGKIVKELGIKVDPDVDEVRVDGEICRIKMKPV----YIIMNKPKGVLTTVKDPFGRPTIIDLLAGVKE-RVFPVGRLDKDTEGLLIITND 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12493.5069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP76_ECTSI5.750e-7990.91Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JKH0_9PHAE4.790e-7890.91S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CPN1_9STRA3.520e-4962.31Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A0G4HIW2_9ALVE2.910e-4253.54S4 domain-containing protein (Fragment) n=1 Tax=Ch... [more]
A0A0G4ETA8_VITBC2.730e-4158.20S4 domain-containing protein n=1 Tax=Vitrella bras... [more]
A0A7S2WX07_9STRA4.280e-4159.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3E0KMJ0_9FIRM5.280e-3558.47Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
A0A7S0AM87_9DINO7.340e-3551.61Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
UPI00195878872.980e-3455.08rRNA pseudouridine synthase n=1 Tax=Desulforadius ... [more]
A0A140L426_9FIRM7.540e-3457.14Pseudouridine synthase n=4 Tax=Thermosediminibacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 40..110
e-value: 1.7E-12
score: 57.6
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 40..82
e-value: 2.3E-14
score: 52.8
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 40..109
score: 14.708
NoneNo IPR availableGENE3D3.30.70.580coord: 97..161
e-value: 1.7E-19
score: 71.0
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 39..160
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 39..160
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 39..144
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 104..160
e-value: 1.7E-9
score: 37.9
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 37..96
e-value: 6.0E-23
score: 81.9
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 142..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12493contigM-pyrifera_M_contig12493:269..2429 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12493.5069.1mRNA_M-pyrifera_M_contig12493.5069.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12493 269..2438 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12493.5069.1 ID=prot_M-pyrifera_M_contig12493.5069.1|Name=mRNA_M-pyrifera_M_contig12493.5069.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MAMPGAGGRRGGGGGRGGGRGRVRGRGAPPPDAFALTGEERLQKFLSHAG
LDSRRQCEQMILDGRVRVNGKMVKELGVKVDPKRDQVHVDGNRVFMRPSS
EVKWVALNKPKGVICTVSDELGRPTAVSAVPRGKEMRLVPVGRLDRDSCG
LLLMTNENSWV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR006145PsdUridine_synth_RsuA/RluA
IPR036986S4_RNA-bd_sf
IPR018496PsdUridine_synth_RsuA/RluB_CS