mRNA_M-pyrifera_M_contig124916.5066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124916.5066.1
Unique NamemRNA_M-pyrifera_M_contig124916.5066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A356TH77_9DELT (CHASE domain-containing protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TH77_9DELT)

HSP 1 Score: 118 bits (295), Expect = 4.300e-29
Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 LMAIQSIADYLADGNGGADGDFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGKSSL 444
            L+A++SI      G    +  FV  +  +Q+  GG+ A+NW+APDGTI  V P E N+ A G+++  HP A     +A RTR P  T P+ LFQG  G ATY PV  + E+IG++N VF ++ LVE SL  G+L++H L I   + +L
Sbjct:   80 LVAVESIRRIREAGLMDEEATFVRSATIVQNELGGYLAINWIAPDGTIVWVSPAERNAAARGRNVFRHPQASPAAREAERTRRPSATPPIPLFQGIAGFATYYPVIVEGELIGFVNGVFDIRGLVEASLEEGILEAHELRITTDEGAL 227          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A520QJZ8_9DELT (Histidine kinase n=2 Tax=Myxococcales TaxID=29 RepID=A0A520QJZ8_9DELT)

HSP 1 Score: 118 bits (295), Expect = 5.400e-28
Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 LMAIQSIADYLADGNGGADGDFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGKSSL 444
            L+A++SI      G    +  FV  +  +Q+  GG+ A+NW+APDGTI  V P E N+ A G+++  HP A     +A RTR P  T P+ LFQG  G ATY PV  + E+IG++N VF ++ LVE SL  G+L++H L I   + +L
Sbjct:   59 LVAVESIRRIREAGLMDEEATFVRSATIVQNELGGYLAINWIAPDGTIVWVSPAERNAAARGRNVFRHPQASPAAREAERTRRPSATPPIPLFQGIAGFATYYPVIVEGELIGFVNGVFDIRGLVEASLEEGILEAHELRITTDEGAL 206          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A3A4JVR3_9DELT (Histidine kinase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3A4JVR3_9DELT)

HSP 1 Score: 113 bits (283), Expect = 2.350e-26
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   64 FVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDG 432
            F   + +LQ    G QA+NWV PDGTIE VVP   N  A G++L  HP A   FL A  T + +LT P+EL QGGRG+A Y+PV    + IG+LN VFR+  L+E +L  G+ D   ++I DG
Sbjct:   83 FSRYAMNLQRQLSGLQAVNWVGPDGTIEWVVPEGPNRLAQGRNLKQHPGAASTFLAAAETGQMRLTPPIELLQGGRGIAAYIPVIEGGQTIGFLNPVFRIDTLMEDALAKGVRDHFAVTISDG 205          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A7C3H1V7_9BACT (CHASE domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3H1V7_9BACT)

HSP 1 Score: 105 bits (262), Expect = 1.480e-25
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   61 DFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDR-DEEIIGYLNAVFRMQQLVERSLGA 393
            DF+ R++ +     GFQA+NW+ P G I++V P+E N  ALG+ L  HP A + F+ A + REP +T  + LFQGG G A+Y PV R D +++GY+N VFR++  ++ +LGA
Sbjct:   78 DFIHRAEMIYQAAPGFQAINWIDPQGRIQLVFPQEGNLPALGRDLHTHPDAAEFFILAEQKREPTITPAVRLFQGGLGFASYWPVVRPDGQLLGYVNGVFRLRSALDAALGA 189          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A2A5DE56_9BACT (Histidine kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5DE56_9BACT)

HSP 1 Score: 108 bits (271), Expect = 8.850e-25
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   61 DFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLE-LFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVD 429
            +F  +S  +Q  FGGFQALNW+    TI  VVP   N  ALGK +L+ P +      A RT +P L+ P+E LFQGGRG ATY PV R+EE++G++N VFR   ++E +L +G+ D +++ I D
Sbjct:   79 EFREQSIIIQKAFGGFQALNWINHQYTISWVVPMHGNEAALGKYILDSPNSIVGIQGAARTNQPGLSQPIESLFQGGRGFATYFPVRRNEELLGFVNGVFRTNFMLEEALNSGVRDLYSVHISD 202          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A2D9TAZ7_9DELT (Histidine kinase n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TAZ7_9DELT)

HSP 1 Score: 105 bits (262), Expect = 1.110e-23
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   70 ARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGK 435
            AR++  Q+ +GGFQ +NW+   G I  V P E N  ALG+S+ +HPIA   F  AR    P +T  LELFQGGRG ATY P + D     Y+N VFR++ LVE +L  G LD + +++ D +
Sbjct:   86 ARAEVAQELYGGFQGINWLDDAGVIRFVAPLEPNRNALGRSVRDHPIAHTAFERARADGSPHMTEALELFQGGRGFATYYPFE-DAGERRYVNGVFRIKPLVETALRGGFLDEYAVALRDDR 206          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A545U2S6_9PROT (Histidine kinase n=2 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U2S6_9PROT)

HSP 1 Score: 103 bits (257), Expect = 7.120e-23
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 LMAIQSIADYLADGNGGADGDFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGKSSL 444
            L  I+ I +    G       +V   +SLQ  F GFQA+NWV P+G I+ V P   N  ALG +L  HPIAG+      R+     T P+ L QGG+G  T+ P+ RD  + GYLN VFR++ L+  +L       + ++I DG+ +L
Sbjct:   63 LSIIEHIRNLWMKGQINNHDAYVETVESLQLQFSGFQAINWVNPEGVIQWVAPVAGNGPALGANLAEHPIAGELMERTLRSNRDMATRPVMLLQGGKGFTTFYPLIRDGRLEGYLNGVFRVESLMTEALAQVARSDYRITIRDGEHAL 210          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A7X7Z1Z5_9DELT (Histidine kinase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X7Z1Z5_9DELT)

HSP 1 Score: 102 bits (253), Expect = 2.550e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   61 DFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGK 435
            DF  ++  L   F G QA+NW+  +G I  +VP +AN  A  K L  HP A   FL+A RT + Q+T P+ L QGG G A Y P++   E  GYLNAVFR+  L+E  L  G+    +  I DG+
Sbjct:   80 DFRLQATDLISQFSGLQAINWIDREGFIRWIVPEDANLAAKDKDLKKHPQAAQTFLNAMRTGKIQVTPPVMLLQGGHGFAAYFPLEVQGERQGYLNAVFRLDPLIEGCLAHGIQQQFSFVIRDGE 204          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A1Q4UTN4_9PROT (Diguanylate cyclase n=2 Tax=Thalassospira TaxID=168934 RepID=A0A1Q4UTN4_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-21
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 LMAIQSIADYLADGNGGADGDFVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHPIAGDPFLD-ARRTREPQLTAPLELFQGGRGVATYMPVDRDE-EIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGKSSL 444
            L A+++ AD         +  ++A++  LQ  F   QA+NW++P+  I+ V P + N  A+G  L  HP+AG P LD A   R+ Q+T  LEL QGGRG A Y+PV   E EIIG +N VFR++ ++   LG+  L  +T+ + +  S L
Sbjct:   76 LHALENFADNWRGNAPEDERQYIAQAAPLQSRFEALQAINWISPNYIIKYVAPIKGNVSAMGADLKRHPVAG-PVLDMAFDQRQTQITPTLELLQGGRGFAAYVPVITPEGEIIGMVNGVFRIRSMLATILGSDYLADYTIRVRENASVL 224          
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Match: A0A3M1SLI2_9BACT (PAS domain S-box protein (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M1SLI2_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 3.940e-21
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   64 FVARSQSLQDNFGGFQALNWVAPDGTIEVVVPREANSGALGKSLLNHP--IAGDPFLDARRTREPQLTAPLELFQGGRGVATYMPVDRDEEIIGYLNAVFRMQQLVERSL 387
            F   ++ + ++   F+A+NW+  +G I+++ P+E N GALGK++ NHP       F +A  T E   T  ++LFQGG+GVA+Y PV +D  IIGYLN VFR+  ++  +L
Sbjct:   79 FPIVTEPIHESLSEFRAINWIDKEGVIKIISPKEGNEGALGKNVKNHPSYTVRAAFTEAEETGEYSFTGVIDLFQGGKGVASYFPVRKDGRIIGYLNGVFRIIPILRDAL 188          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124916.5066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356TH77_9DELT4.300e-2941.89CHASE domain-containing protein (Fragment) n=1 Tax... [more]
A0A520QJZ8_9DELT5.400e-2841.89Histidine kinase n=2 Tax=Myxococcales TaxID=29 Rep... [more]
A0A3A4JVR3_9DELT2.350e-2647.15Histidine kinase n=1 Tax=Myxococcales bacterium Ta... [more]
A0A7C3H1V7_9BACT1.480e-2544.64CHASE domain-containing protein (Fragment) n=1 Tax... [more]
A0A2A5DE56_9BACT8.850e-2545.97Histidine kinase n=1 Tax=Planctomycetes bacterium ... [more]
A0A2D9TAZ7_9DELT1.110e-2345.08Histidine kinase n=1 Tax=Sandaracinus sp. TaxID=20... [more]
A0A545U2S6_9PROT7.120e-2337.84Histidine kinase n=2 Tax=Denitrobaculum tricleocar... [more]
A0A7X7Z1Z5_9DELT2.550e-2242.40Histidine kinase n=1 Tax=Myxococcales bacterium Ta... [more]
A0A1Q4UTN4_9PROT1.590e-2138.67Diguanylate cyclase n=2 Tax=Thalassospira TaxID=16... [more]
A0A3M1SLI2_9BACT3.940e-2140.91PAS domain S-box protein (Fragment) n=1 Tax=Nitros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124916contigM-pyrifera_M_contig124916:2..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.5
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog1177928.TH2_08761
KEGG koko:K21023
KEGG Pathwayko02025,map02025
Hectar predicted targeting categoryother localisation
EggNOG free text desc.signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
EggNOG OGs1MU2C@1224,2JQ4H@204441,2TQS3@28211,COG5001@1,COG5001@2
EC2.7.7.65
COG Functional cat.T
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size444
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.2803116-UTR-M-pyrifera_M_contig124916:1..41622815766.2803116-UTR-M-pyrifera_M_contig124916:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124916 2..4 +
1692277559.4320345-UTR-M-pyrifera_M_contig124916:1..41692277559.4320345-UTR-M-pyrifera_M_contig124916:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124916 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.290537-CDS-M-pyrifera_M_contig124916:4..4451622815766.290537-CDS-M-pyrifera_M_contig124916:4..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124916 5..445 +
1692277559.4434316-CDS-M-pyrifera_M_contig124916:4..4451692277559.4434316-CDS-M-pyrifera_M_contig124916:4..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124916 5..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124916.5066.1prot_M-pyrifera_M_contig124916.5066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124916 5..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124916.5066.1

>prot_M-pyrifera_M_contig124916.5066.1 ID=prot_M-pyrifera_M_contig124916.5066.1|Name=mRNA_M-pyrifera_M_contig124916.5066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MAIQSIADYLADGNGGADGDFVARSQSLQDNFGGFQALNWVAPDGTIEVV
VPREANSGALGKSLLNHPIAGDPFLDARRTREPQLTAPLELFQGGRGVAT
YMPVDRDEEIIGYLNAVFRMQQLVERSLGAGMLDSHTLSIVDGKSSL
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mRNA from alignment at M-pyrifera_M_contig124916:2..445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124916.5066.1 ID=mRNA_M-pyrifera_M_contig124916.5066.1|Name=mRNA_M-pyrifera_M_contig124916.5066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig124916:2..445+ (Macrocystis pyrifera P11B4 male)
CTCATGGCAATTCAGTCGATTGCCGATTACCTGGCCGATGGCAACGGTGG AGCCGATGGAGACTTCGTCGCACGCTCACAAAGCCTTCAAGATAACTTCG GAGGGTTCCAAGCGCTAAACTGGGTCGCTCCCGACGGAACCATCGAGGTA GTCGTGCCGCGGGAAGCCAACTCTGGGGCTCTCGGCAAGAGCCTGCTAAA TCATCCCATCGCCGGTGATCCTTTTCTTGACGCTCGGCGAACACGGGAGC CTCAGCTGACCGCTCCCCTTGAACTATTCCAAGGCGGTCGTGGTGTGGCG ACCTACATGCCCGTCGATCGCGACGAGGAGATTATTGGCTACCTCAACGC TGTCTTCCGCATGCAGCAACTCGTCGAGAGGTCCCTCGGCGCAGGAATGC TCGATAGCCACACGCTGAGCATTGTCGATGGCAAGAGTTCACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124916:2..445+

>mRNA_M-pyrifera_M_contig124916.5066.1 ID=mRNA_M-pyrifera_M_contig124916.5066.1|Name=mRNA_M-pyrifera_M_contig124916.5066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig124916:2..445+ (Macrocystis pyrifera P11B4 male)
ATGGCAATTCAGTCGATTGCCGATTACCTGGCCGATGGCAACGGTGGAGC
CGATGGAGACTTCGTCGCACGCTCACAAAGCCTTCAAGATAACTTCGGAG
GGTTCCAAGCGCTAAACTGGGTCGCTCCCGACGGAACCATCGAGGTAGTC
GTGCCGCGGGAAGCCAACTCTGGGGCTCTCGGCAAGAGCCTGCTAAATCA
TCCCATCGCCGGTGATCCTTTTCTTGACGCTCGGCGAACACGGGAGCCTC
AGCTGACCGCTCCCCTTGAACTATTCCAAGGCGGTCGTGGTGTGGCGACC
TACATGCCCGTCGATCGCGACGAGGAGATTATTGGCTACCTCAACGCTGT
CTTCCGCATGCAGCAACTCGTCGAGAGGTCCCTCGGCGCAGGAATGCTCG
ATAGCCACACGCTGAGCATTGTCGATGGCAAGAGTTCACTCATGGCAATT
CAGTCGATTGCCGATTACCTGGCCGATGGCAACGGTGGAGCCGATGGAGA
CTTCGTCGCACGCTCACAAAGCCTTCAAGATAACTTCGGAGGGTTCCAAG
CGCTAAACTGGGTCGCTCCCGACGGAACCATCGAGGTAGTCGTGCCGCGG
GAAGCCAACTCTGGGGCTCTCGGCAAGAGCCTGCTAAATCATCCCATCGC
CGGTGATCCTTTTCTTGACGCTCGGCGAACACGGGAGCCTCAGCTGACCG
CTCCCCTTGAACTATTCCAAGGCGGTCGTGGTGTGGCGACCTACATGCCC
GTCGATCGCGACGAGGAGATTATTGGCTACCTCAACGCTGTCTTCCGCAT
GCAGCAACTCGTCGAGAGGTCCCTCGGCGCAGGAATGCTCGATAGCCACA
CGCTGAGCATTGTCGATGGCAAGAGTTCACTC
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