mRNA_M-pyrifera_M_contig124911.5065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124911.5065.1
Unique NamemRNA_M-pyrifera_M_contig124911.5065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A7X6ASM6_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ASM6_9ACTN)

HSP 1 Score: 179 bits (454), Expect = 4.360e-54
Identity = 87/151 (57.62%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 DVIDVEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRRR 453
            DV+++ FV +  +L GLVR+D R  AGATR L +++R GE  V V DHELP+   +FE RAP VWVEL CETPLDHWT+GLEAFGL L   EV +P S G+RVP+GLDLDLDT + P   G  F + VRVHG+VL+AD  Y I+  G R R
Sbjct:   19 DVVELHFVTETAALGGLVRLDVRGAAGATRLLVAVVRSGEPNVVVVDHELPVPRHSFELRAPGVWVELGCETPLDHWTVGLEAFGLVLDRGEVASPVSRGERVPVGLDLDLDTTAPPARTGDGFHLPVRVHGDVLVADARYGIDTQGTRFR 169          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A3C0HMQ3_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HMQ3_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 9.970e-49
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    1 DVIDVEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRRR 453
            D ID+E+V    ++AGL+R+  R  AGAT FLA +   GE+PV V D+ELPL + AFEFRAP +W +  CETP++ WTIGLEAFG+A+   +V+ P + GDR P+GLDLD++  SAP+     F   V V GEVL+    YE++A GVRRR
Sbjct:   18 DTIDIEWVDKRQAVAGLLRVSVRPSAGATWFLAVVHEQGEDPVVVLDYELPLVSHAFEFRAPGIWTDFVCETPIEQWTIGLEAFGIAVDPDDVIHPATFGDRTPIGLDLDVEAASAPDEHDDGFEHEVTVRGEVLLGSATYEVDAVGVRRR 168          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A2E8L9G9_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L9G9_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 2.540e-28
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 DVIDVEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEV 279
            D ID+E+V    ++AGL+R+  R  AGAT FLA +   GE+PV V D+ELPL + AFEFRAP +W +  CETP++ WT+GLEAFG+A+   +V
Sbjct:   18 DTIDIEWVDKRQAIAGLLRVSVRPSAGATWFLAVVHEQGEDPVVVLDYELPLVSHAFEFRAPGIWTDFVCETPIEQWTVGLEAFGVAVDPDDV 110          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A6J4HWG1_9ACTN (Uncharacterized protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4HWG1_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 1.490e-24
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   13 VEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPL-AATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTIS---APEGDGAAFAVGVRVHGEVLIADRAYEIEATGVR 447
            ++FVA D  LAG V++  R   G   F A ++  G   VTV DHE+P+      E RA  +W EL CETPLDHW++GLEAFG+AL +         GD   LGLD++ +  +   A  G    +  G  VHG+VL+    + ++ +G R
Sbjct:   28 LDFVAGDGRLAGYVKLTLRPGEGTAWFWAGMVGGGPTLVTVRDHEVPMPTGRGLEVRASGLWTELVCETPLDHWSVGLEAFGVALDDPLEAWGRERGDPWALGLDVEWEATAPCVAWPGPERGYWQGCNVHGDVLVGAERFSLDGSGTR 176          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A2E6ZE22_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6ZE22_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 2.590e-21
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 EFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHEL--PLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRRRA 456
            +F + D  L G V      ++ +  ++A++L      V V D  +   L +   EFRA  +W +  CETPL HWT+GLEAFG+ L E E    D  G R+ +GLDL+ +  + P+ +   F+    V GEVLI D ++EI + G R R+
Sbjct:   23 DFWSPDCDLGGWVHFAYDSESRSGWYVAALLGAQRPLVLVVDPHIRIELLSPYLEFRAEGIWAQHVCETPLRHWTVGLEAFGVTLDEIEDAMGDQWGTRIGVGLDLEWEYAAEPQENDEGFSQKCFVTGEVLIDDMSFEINSKGNRTRS 171          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A7Y2GKM3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKM3_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 2.930e-20
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   13 VEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPL-AATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPE-SEVVTPDS----HGDRVPLGLDLDLDTISAPEGDGAA--FAVGVRVHGEVLIADRAYEIEATGVR 447
            ++F A D SL G +R+    + G + + A ++ P  + V V ++  PL +    E R   +W ++  ETPLDH ++GLEAFG+ L + +E  T D      GDR P+G +LD DT   P G      + +  RVHGE+L+ D   + E  G R
Sbjct:   29 LDFFAPDGSLGGYIRMGLYPNLGVSWYWACLVGPDRQLVMVVENHAPLPSGPGLELRTDGLWQDIVVETPLDHVSVGLEAFGVGLDDPAEAYTVDPVGALWGDRTPIGFELDWDTAGQPYGYPVTSRYEIPCRVHGEILVGDEVIDFEGFGQR 181          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A538FBW7_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FBW7_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 3.390e-20
Identity = 59/158 (37.34%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   10 DVEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLA-ATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGD---------GAAFAVGVRVHGEVLIADRAYEIEATGVRRR 453
            ++ F A D SLAG VR+     A    + A ++  G   V   D E+ L    A E RA  +W  L CETPL+HW++GLEAF +AL + +     + GDR+P+GLDL+ +   AP  D         G  +     VHGEVLI      +E  G R R
Sbjct:   23 ELVFWAQDSSLAGSVRLTLVPGAQRAWYWADLVGAGRPLVAARDDEVDLPRGRALEVRAEGLWSVLTCETPLEHWSVGLEAFAVALDDPDEALGQARGDRLPMGLDLEWEA-DAPARDTDPLGLRAGGRRYEQPALVHGEVLIGSERVALECPGWRVR 179          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A2E7A5N2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A5N2_9ACTN)

HSP 1 Score: 90.5 bits (223), Expect = 1.650e-19
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   16 EFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLAATA--FEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRRRA 456
            +F + +  L G V     + +    ++A++L    + V V D ++P+   +   EFRA  +W +  CETPL+HWT+GLEAFG+ L  +E    +  G R  +GLDL+ + I   E     F     V GEVLI ++A+ +   G R R+
Sbjct:   24 DFWSAEYDLGGWVHFTYDQSSRKAWYVAALLGVDRQLVLVVDPKIPIPQLSQYLEFRAEGIWAQHVCETPLEHWTVGLEAFGVTLETAEDAMGNQWGKRTGVGLDLEWERIEDTEETVTGFRQRCSVSGEVLIDEQAFGLHVDGWRSRS 172          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: A0A358D1J8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358D1J8_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 2.180e-19
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   16 EFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHELPLAATA--FEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRRRAGAMLRTP 477
            +F + +  L G V       + +  ++A++L      V V D ++ +   +   EFRA  +W +  CETP+ HWTIGLEAFG+ L + E    D  G R  +GLDL+ +  + P+     F+    V+GEVLI D ++E+ + G R R  + +  P
Sbjct:   23 DFWSPNHDLGGWVHFTYDSASRSGWYVAALLGSERPLVLVVDPQVRIEELSPYLEFRAEGIWAQHVCETPMQHWTIGLEAFGVTLDQPEDAMGDQWGIRTGVGLDLEWEHAAEPQQTENGFSQDCFVNGEVLIDDMSFEVASKGTRSRMWSAINPP 178          
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Match: UPI001AA0A53B (hypothetical protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0A53B)

HSP 1 Score: 90.9 bits (224), Expect = 5.600e-19
Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 1
Query:   16 EFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHEL--PLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHGDRVPLGLDLDLDTISAPEGDGAAFA---------VGVRVHGEVLIADRAYEIEATGVRRRA 456
            +F + D S+ G VR+    + G   + A +  P    V V DHE+  P+   + E RA  +W +  CETP +HW++GLEA  ++L +       S G  VPLG DL+ +T      DG  FA         V  RVHGEVL+     E++  G R  A
Sbjct:   30 DFASPDGSVGGYVRVGRYPNLGVVWYWACLAGPRRPAVMVIDHEVRPPVREGSLELRASGLWADHNCETPFEHWSVGLEASAVSLDDPLDAYRGSLGQPVPLGFDLEWET------DGEVFAHPPPLDGYEVPCRVHGEVLVGRERLELDGVGQRNHA 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124911.5065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6ASM6_9ACTN4.360e-5457.62Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3C0HMQ3_9ACTN9.970e-4951.66Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A2E8L9G9_9ACTN2.540e-2852.69Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A6J4HWG1_9ACTN1.490e-2438.93Uncharacterized protein n=1 Tax=uncultured Acidimi... [more]
A0A2E6ZE22_9ACTN2.590e-2136.24Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2GKM3_9ACTN2.930e-2035.29Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A538FBW7_9ACTN3.390e-2037.34Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2E7A5N2_9ACTN1.650e-1933.56Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A358D1J8_9ACTN2.180e-1932.69Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI001AA0A53B5.600e-1934.81hypothetical protein n=1 Tax=Rhabdothermincola sed... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124911contigM-pyrifera_M_contig124911:35..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.2430756-CDS-M-pyrifera_M_contig124911:34..5111622815766.2430756-CDS-M-pyrifera_M_contig124911:34..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124911 35..511 +
1692277559.4217775-CDS-M-pyrifera_M_contig124911:34..5111692277559.4217775-CDS-M-pyrifera_M_contig124911:34..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124911 35..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124911.5065.1prot_M-pyrifera_M_contig124911.5065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124911 35..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124911.5065.1

>prot_M-pyrifera_M_contig124911.5065.1 ID=prot_M-pyrifera_M_contig124911.5065.1|Name=mRNA_M-pyrifera_M_contig124911.5065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
DVIDVEFVADDLSLAGLVRIDTRRDAGATRFLASILRPGEEPVTVFDHEL
PLAATAFEFRAPAVWVELCCETPLDHWTIGLEAFGLALPESEVVTPDSHG
DRVPLGLDLDLDTISAPEGDGAAFAVGVRVHGEVLIADRAYEIEATGVRR
RAGAMLRTP
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mRNA from alignment at M-pyrifera_M_contig124911:35..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124911.5065.1 ID=mRNA_M-pyrifera_M_contig124911.5065.1|Name=mRNA_M-pyrifera_M_contig124911.5065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig124911:35..511+ (Macrocystis pyrifera P11B4 male)
GACGTCATCGACGTCGAGTTCGTGGCCGACGACCTCTCGCTGGCCGGCCT GGTGCGCATCGACACCCGTCGGGACGCCGGTGCGACCCGCTTCCTCGCGT CGATCCTGCGACCGGGCGAGGAGCCGGTGACCGTGTTCGACCACGAGCTG CCGCTGGCGGCCACGGCGTTCGAGTTCCGAGCTCCCGCCGTATGGGTGGA GCTGTGCTGCGAGACGCCCCTCGATCACTGGACGATCGGCTTGGAAGCGT TCGGTCTCGCGCTGCCCGAGTCCGAGGTCGTGACACCGGACTCGCACGGG GATCGGGTGCCGCTCGGGCTGGATCTCGACCTCGACACCATCAGCGCCCC GGAGGGCGATGGTGCGGCGTTCGCGGTCGGGGTGCGAGTCCACGGCGAGG TGCTCATCGCAGATCGCGCCTACGAGATCGAGGCCACCGGCGTTCGCCGC CGCGCCGGCGCCATGCTGCGAACCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124911:35..511+

>mRNA_M-pyrifera_M_contig124911.5065.1 ID=mRNA_M-pyrifera_M_contig124911.5065.1|Name=mRNA_M-pyrifera_M_contig124911.5065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig124911:35..511+ (Macrocystis pyrifera P11B4 male)
GACGTCATCGACGTCGAGTTCGTGGCCGACGACCTCTCGCTGGCCGGCCT
GGTGCGCATCGACACCCGTCGGGACGCCGGTGCGACCCGCTTCCTCGCGT
CGATCCTGCGACCGGGCGAGGAGCCGGTGACCGTGTTCGACCACGAGCTG
CCGCTGGCGGCCACGGCGTTCGAGTTCCGAGCTCCCGCCGTATGGGTGGA
GCTGTGCTGCGAGACGCCCCTCGATCACTGGACGATCGGCTTGGAAGCGT
TCGGTCTCGCGCTGCCCGAGTCCGAGGTCGTGACACCGGACTCGCACGGG
GATCGGGTGCCGCTCGGGCTGGATCTCGACCTCGACACCATCAGCGCCCC
GGAGGGCGATGGTGCGGCGTTCGCGGTCGGGGTGCGAGTCCACGGCGAGG
TGCTCATCGCAGATCGCGCCTACGAGATCGAGGCCACCGGCGTTCGCCGC
CGCGCCGGCGCCATGCTGCGAACCCCCGACGTCATCGACGTCGAGTTCGT
GGCCGACGACCTCTCGCTGGCCGGCCTGGTGCGCATCGACACCCGTCGGG
ACGCCGGTGCGACCCGCTTCCTCGCGTCGATCCTGCGACCGGGCGAGGAG
CCGGTGACCGTGTTCGACCACGAGCTGCCGCTGGCGGCCACGGCGTTCGA
GTTCCGAGCTCCCGCCGTATGGGTGGAGCTGTGCTGCGAGACGCCCCTCG
ATCACTGGACGATCGGCTTGGAAGCGTTCGGTCTCGCGCTGCCCGAGTCC
GAGGTCGTGACACCGGACTCGCACGGGGATCGGGTGCCGCTCGGGCTGGA
TCTCGACCTCGACACCATCAGCGCCCCGGAGGGCGATGGTGCGGCGTTCG
CGGTCGGGGTGCGAGTCCACGGCGAGGTGCTCATCGCAGATCGCGCCTAC
GAGATCGAGGCCACCGGCGTTCGCCGCCGCGCCGGCGCCATGCTGCGAAC
CCCC
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