mRNA_M-pyrifera_M_contig124896.5062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124896.5062.1
Unique NamemRNA_M-pyrifera_M_contig124896.5062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A7C1CJ64_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CJ64_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 4.490e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   55 AAINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            A++   +G+ L++ VV     RTLE+G A G S  ++++AL+ NGGG HVAIDP+Q T W G
Sbjct:   28 ASLPYEDGKALYETVVATKSARTLEIGMAYGASTLFILQALQVNGGGRHVAIDPYQQTWWEG 89          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A534W0N2_9DELT (Class I SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W0N2_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 1.530e-9
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 IYKERGARSLDGSVVKLAA-AINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQW 234
            +Y+E      DG    L    I  A G +LFDLV D     TLEVGFA GLS  ++ EAL++NG G HV IDP + +++
Sbjct:   15 LYREGAVVHRDGKRRPLCPPGIPAARGEYLFDLVRDRRPTLTLEVGFAYGLSTLFIAEALRQNGSGHHVTIDPNERSRF 93          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A534Q3V6_9DELT (Class I SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Q3V6_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.330e-8
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    1 IYKERGARSLDGSVVKLAAAINPA-EGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            +Y+E      DG   +L     PA +G +LF LV D     TLE+GFA GLS  ++ EAL++NG G HV IDP +  ++ G
Sbjct:   50 LYRENAVVHRDGKRRQLCPPGIPAFKGEYLFQLVRDRRPNVTLEIGFAYGLSTLFIAEALRQNGRGRHVVIDPNEHRRFDG 130          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A5C7PFH2_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A5C7PFH2_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 5.000e-8
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   61 INPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            I+  EG  LF L        TLEVG A G S  +L+ AL  NGGG+HVAIDP+Q   W G
Sbjct:   84 ISAEEGMALFSLCRAGDVVDTLEVGLAYGFSTVFLLAALADNGGGQHVAIDPYQDIDWDG 143          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: UPI00164DDEF4 (class I SAM-dependent methyltransferase n=1 Tax=Pontibacter cellulosilyticus TaxID=1720253 RepID=UPI00164DDEF4)

HSP 1 Score: 55.5 bits (132), Expect = 2.990e-7
Identity = 26/80 (32.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 IYKERGARSLDGSVVKLAAAINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            I++ +   + +G V+K+ +  N ++   L  ++  N F +++E+GFA G S   +VE +++N G +HV ID FQ + W G
Sbjct:    8 IFENKEFVNFEGQVIKIHSETNKSQCEFLQQIISQNKFSKSIEIGFAFGTSTLAIVEEIEKNKG-KHVVIDKFQHSDWGG 86          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A1M3MC43_9BACT (Uncharacterized protein n=1 Tax=Paludibacter sp. 47-17 TaxID=1895899 RepID=A0A1M3MC43_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.470e-7
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 IYKERGARSLDGSVVKLAAAINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            I+  +      G    L++ I+  EGR + +++ +N FK T+E+G A G+S+ ++ EAL       H  IDP Q T W G
Sbjct:   10 IFTTQQVTDSQGKKHTLSSNIDFQEGRFIAEIIRENQFKNTIEIGCAMGISSLFICEALGNQHEKHHTIIDPMQTTDWSG 89          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A1J4XY11_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Woesearchaeota TaxID=1801616 RepID=A0A1J4XY11_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 1.360e-6
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   52 AAAINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQ 222
            +A++   E   L+ LV + G +R+LE GFANG SA +++ A +   G  H+ IDPFQ
Sbjct:   16 SASVKEHEAEFLYGLVKEQGLRRSLETGFANGASAVHILSAQQGLKGARHIVIDPFQ 72          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A1V5LUI0_9BACT (O-methyltransferase n=1 Tax=bacterium ADurb.Bin429 TaxID=1866930 RepID=A0A1V5LUI0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.190e-6
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 1
Query:    1 IYKERGARSLDGSVVKLAAAINPAE-GRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQAT 228
            IY  R      G  V +     P E G  L+ LV       TLE+G A G+S  ++ +AL+ NG G H+ IDP+Q T
Sbjct:   11 IYSSRKVYDASGEAVSVFPTSIPCEEGMALYQLVKTAKPDTTLEIGMAYGVSTLFICQALRENGHGRHIVIDPYQTT 87          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A534RXS2_9DELT (Class I SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RXS2_9DELT)

HSP 1 Score: 52.0 bits (123), Expect = 4.050e-6
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   82 HLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQATQWRG 240
            +LF LV D     TLE+GFA GLS  ++ EAL++NG G HV IDP +  ++ G
Sbjct:    9 YLFQLVRDRRPDVTLEIGFAYGLSTLFIAEALRQNGRGRHVVIDPNEHRRFDG 61          
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Match: A0A2G9NJ78_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_14 TaxID=1974441 RepID=A0A2G9NJ78_9ARCH)

HSP 1 Score: 49.7 bits (117), Expect = 3.670e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   58 AINPAEGRHLFDLVVDNGFKRTLEVGFANGLSAAYLVEALKRNGGGEHVAIDPFQ 222
            +I   E R +++ +  N  K+TLEVGFA G SA+Y++ A K     +H  IDPFQ
Sbjct:   18 SITREEARFIYNFLTKNNIKKTLEVGFAYGCSASYIISATKD----KHYVIDPFQ 68          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124896.5062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7C1CJ64_9BACT4.490e-1046.77Class I SAM-dependent methyltransferase n=1 Tax=Ca... [more]
A0A534W0N2_9DELT1.530e-944.30Class I SAM-dependent methyltransferase n=1 Tax=De... [more]
A0A534Q3V6_9DELT1.330e-841.98Class I SAM-dependent methyltransferase n=1 Tax=De... [more]
A0A5C7PFH2_9ACTN5.000e-850.00Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
UPI00164DDEF42.990e-732.50class I SAM-dependent methyltransferase n=1 Tax=Po... [more]
A0A1M3MC43_9BACT4.470e-733.75Uncharacterized protein n=1 Tax=Paludibacter sp. 4... [more]
A0A1J4XY11_9ARCH1.360e-642.11Uncharacterized protein n=2 Tax=Candidatus Woesear... [more]
A0A1V5LUI0_9BACT2.190e-637.66O-methyltransferase n=1 Tax=bacterium ADurb.Bin429... [more]
A0A534RXS2_9DELT4.050e-649.06Class I SAM-dependent methyltransferase n=1 Tax=De... [more]
A0A2G9NJ78_9ARCH3.670e-543.64Uncharacterized protein n=1 Tax=Candidatus Pacearc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124896contigM-pyrifera_M_contig124896:2..241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.9207795-CDS-M-pyrifera_M_contig124896:1..2411622815765.9207795-CDS-M-pyrifera_M_contig124896:1..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124896 2..241 -
1692277559.2084053-CDS-M-pyrifera_M_contig124896:1..2411692277559.2084053-CDS-M-pyrifera_M_contig124896:1..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124896 2..241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124896.5062.1prot_M-pyrifera_M_contig124896.5062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124896 2..241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124896.5062.1

>prot_M-pyrifera_M_contig124896.5062.1 ID=prot_M-pyrifera_M_contig124896.5062.1|Name=mRNA_M-pyrifera_M_contig124896.5062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
IYKERGARSLDGSVVKLAAAINPAEGRHLFDLVVDNGFKRTLEVGFANGL
SAAYLVEALKRNGGGEHVAIDPFQATQWRG
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mRNA from alignment at M-pyrifera_M_contig124896:2..241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124896.5062.1 ID=mRNA_M-pyrifera_M_contig124896.5062.1|Name=mRNA_M-pyrifera_M_contig124896.5062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig124896:2..241- (Macrocystis pyrifera P11B4 male)
ATCTACAAGGAGCGGGGCGCGCGGAGCCTGGACGGGAGCGTGGTGAAGCT GGCAGCCGCCATCAACCCGGCAGAAGGGAGGCACTTGTTCGATCTCGTGG TCGACAACGGCTTCAAACGCACCCTAGAGGTGGGCTTTGCCAATGGGTTG TCCGCAGCATACCTCGTAGAAGCCCTAAAACGCAACGGAGGAGGAGAACA CGTGGCAATCGACCCTTTCCAAGCCACACAATGGAGAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124896:2..241-

>mRNA_M-pyrifera_M_contig124896.5062.1 ID=mRNA_M-pyrifera_M_contig124896.5062.1|Name=mRNA_M-pyrifera_M_contig124896.5062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig124896:2..241- (Macrocystis pyrifera P11B4 male)
ATCTACAAGGAGCGGGGCGCGCGGAGCCTGGACGGGAGCGTGGTGAAGCT
GGCAGCCGCCATCAACCCGGCAGAAGGGAGGCACTTGTTCGATCTCGTGG
TCGACAACGGCTTCAAACGCACCCTAGAGGTGGGCTTTGCCAATGGGTTG
TCCGCAGCATACCTCGTAGAAGCCCTAAAACGCAACGGAGGAGGAGAACA
CGTGGCAATCGACCCTTTCCAAGCCACACAATGGAGAGGAATCTACAAGG
AGCGGGGCGCGCGGAGCCTGGACGGGAGCGTGGTGAAGCTGGCAGCCGCC
ATCAACCCGGCAGAAGGGAGGCACTTGTTCGATCTCGTGGTCGACAACGG
CTTCAAACGCACCCTAGAGGTGGGCTTTGCCAATGGGTTGTCCGCAGCAT
ACCTCGTAGAAGCCCTAAAACGCAACGGAGGAGGAGAACACGTGGCAATC
GACCCTTTCCAAGCCACACAATGGAGAGGA
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