mRNA_M-pyrifera_M_contig124892.5059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig124892.5059.1
Unique Name	mRNA_M-pyrifera_M_contig124892.5059.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A6I6AD92_9PLAN (Uncharacterized protein n=7 Tax=Bacteria TaxID=2 RepID=A0A6I6AD92_9PLAN)

HSP 1 Score: 263 bits (673), Expect = 4.590e-80
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINPDQLPPNAGWMRSNSLKLIQH+IEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP
Sbjct:  899 LDTINPDQLPPNAGWMRSNSLKLIQHEIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 1029

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517ZZE0_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZE0_9PLAN)

HSP 1 Score: 248 bits (633), Expect = 2.100e-74
Identity = 120/131 (91.60%), Postives = 128/131 (97.71%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINPDQLPPNAGWMRSNSLKLIQH+IEGQKKK+ISMLAKGNAELEGNALVKNKK P+NQSFIARADTISYD+SKDLYMMRSFGNRKATIRRYSRTGKT + P++AQQIEFAPSYDRVTLHGVTG+QGLP
Sbjct:  898 LDTINPDQLPPNAGWMRSNSLKLIQHEIEGQKKKYISMLAKGNAELEGNALVKNKKAPSNQSFIARADTISYDQSKDLYMMRSFGNRKATIRRYSRTGKTSTTPSEAQQIEFAPSYDRVTLHGVTGIQGLP 1028

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A518I4W7_9PLAN (OstA-like protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I4W7_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.620e-64
Identity = 108/131 (82.44%), Postives = 122/131 (93.13%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD+LPPNAGWMRSNSLKLIQH+I GQKKK+ISMLAKGNAELEGNALVKNK+TPTNQSF A ADTIS+DESKDLYM+RSFGNRKAT+RR+SR G  P+  + AQQIEFAP++DRVTLHGVTG+QGLP
Sbjct:  949 LDTIDPDKLPPNAGWMRSNSLKLIQHEISGQKKKYISMLAKGNAELEGNALVKNKRTPTNQSFSASADTISFDESKDLYMLRSFGNRKATLRRFSRVGSDPTQ-SVAQQIEFAPAHDRVTLHGVTGIQGLP 1078

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517R8C3_9PLAN (OstA-like protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8C3_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.650e-64
Identity = 108/131 (82.44%), Postives = 122/131 (93.13%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD+LPPNAGWMRSNSLKLIQH+I GQKKK+ISMLAKGNAELEGNAL+KNK+TPTNQSF A ADTIS+DESKDLYMMRSFGNRKATIRR+SR G  P+  + AQQIEF+P++DRVTLHGVTG+QGLP
Sbjct:  953 LDTIDPDKLPPNAGWMRSNSLKLIQHEISGQKKKYISMLAKGNAELEGNALIKNKRTPTNQSFSASADTISFDESKDLYMMRSFGNRKATIRRFSRVGGVPNQ-SVAQQIEFSPTHDRVTLHGVTGIQGLP 1082

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517W4I3_9PLAN (OstA-like protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4I3_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 1.400e-62
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINP++LPP AGWMRSNSLKLIQH+I GQKKKFIS+LAKGNAELEGN L+KNK TP NQSFIARADTIS+DESKDLY MRSFGNRKAT+RRYS+ G  P+  N++Q+IEFAP+YDRVTLHGVT +QGLP
Sbjct:  956 LDTINPNKLPPQAGWMRSNSLKLIQHEINGQKKKFISVLAKGNAELEGNTLIKNKSTPMNQSFIARADTISFDESKDLYTMRSFGNRKATLRRYSKGGNGPTM-NESQEIEFAPTYDRVTLHGVTVIQGLP 1085

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517X3G9_9PLAN (OstA-like protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3G9_9PLAN)

HSP 1 Score: 215 bits (547), Expect = 2.640e-62
Identity = 104/131 (79.39%), Postives = 119/131 (90.84%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINP++LPP  GWMRSNSLKLIQH+I GQKKKFIS+LAKGNAELEGN L+KNK+TP NQSFIARADTIS+DESKDLY MRSFGNRKAT+RRYS+ G  P+  N++Q+IEFAP+YDRVTLHGVT +QGLP
Sbjct:  957 LDTINPNKLPPQTGWMRSNSLKLIQHEINGQKKKFISVLAKGNAELEGNTLIKNKRTPMNQSFIARADTISFDESKDLYTMRSFGNRKATLRRYSKGGNGPTM-NESQEIEFAPTYDRVTLHGVTVIQGLP 1086

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A355G6T5_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G6T5_9PLAN)

HSP 1 Score: 192 bits (487), Expect = 2.550e-56
Identity = 96/131 (73.28%), Postives = 114/131 (87.02%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+ D+LPP AG MRSNSLKLIQHDIEGQKKK ISMLAKGNAE+EGN L+K+K+TPT+Q F A ADTIS+DESKD YM+RSFGNRKAT+RR+S +G+ P     +QQI+F+PS+D+VTLHGVT LQGLP
Sbjct:  387 LDTIDRDKLPPGAGSMRSNSLKLIQHDIEGQKKKSISMLAKGNAEVEGNTLIKSKQTPTSQEFSASADTISFDESKDQYMLRSFGNRKATLRRFSHSGQNPQRV-VSQQIDFSPSHDQVTLHGVTELQGLP 516

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A3D3RH75_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RH75_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 3.140e-56
Identity = 97/131 (74.05%), Postives = 116/131 (88.55%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD++PP AG MRSNSLKLIQHDI+GQKKKFISMLAKGNAE+EGN L+KNK+TPT+Q F A ADTIS+DESKD Y +RSFGNRKAT+RRYS   ++P+  + +QQIEF+PS+DRVTLHGVT +QGLP
Sbjct:  696 LDTIDPDRMPPGAGSMRSNSLKLIQHDIDGQKKKFISMLAKGNAEVEGNTLIKNKQTPTSQEFSASADTISFDESKDQYTLRSFGNRKATLRRYSPFRQSPTR-SVSQQIEFSPSHDRVTLHGVTEIQGLP 825

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A6CDR8_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CDR8_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 8.790e-56
Identity = 97/131 (74.05%), Postives = 116/131 (88.55%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD++PP AG MRSNSLKLIQHDI+GQKKKFISMLAKGNAE+EGN L+KNK+TPT+Q F A ADTIS+DESKD Y +RSFGNRKAT+RRYS   ++P+  + +QQIEF+PS+DRVTLHGVT +QGLP
Sbjct:  918 LDTIDPDRMPPGAGSMRSNSLKLIQHDIDGQKKKFISMLAKGNAEVEGNTLIKNKQTPTSQEFSASADTISFDESKDQYTLRSFGNRKATLRRYSPFRQSPTR-SVSQQIEFSPSHDRVTLHGVTEIQGLP 1047

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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A2E2C7J3_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7J3_9PLAN)

HSP 1 Score: 193 bits (491), Expect = 1.080e-54
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = 1

Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+ D+LPP AG MRSNSLKLIQHDIEGQKKK ISMLAKGNAE+EGN L+K+K+TPT+Q F A ADTIS+DESKD YM+RSFGNRKAT+RR+S +G+ P     +QQI+F+PS+DRVTLHGVT LQGLP
Sbjct:  919 LDTIDRDKLPPGAGSMRSNSLKLIQHDIEGQKKKSISMLAKGNAEVEGNTLIKSKQTPTSQEFSASADTISFDESKDQYMLRSFGNRKATLRRFSHSGQNPQRV-VSQQIDFSPSHDRVTLHGVTELQGLP 1048

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6I6AD92_9PLAN	4.590e-80	99.24	Uncharacterized protein n=7 Tax=Bacteria TaxID=2 R...	[more]
A0A517ZZE0_9PLAN	2.100e-74	91.60	Uncharacterized protein n=6 Tax=Gimesia panareensi...	[more]
A0A518I4W7_9PLAN	1.620e-64	82.44	OstA-like protein n=1 Tax=Gimesia fumaroli TaxID=2...	[more]
A0A517R8C3_9PLAN	1.650e-64	82.44	OstA-like protein n=1 Tax=Gimesia alba TaxID=25279...	[more]
A0A517W4I3_9PLAN	1.400e-62	80.15	OstA-like protein n=1 Tax=Gimesia aquarii TaxID=25...	[more]
A0A517X3G9_9PLAN	2.640e-62	79.39	OstA-like protein n=1 Tax=Gimesia aquarii TaxID=25...	[more]
A0A355G6T5_9PLAN	2.550e-56	73.28	Uncharacterized protein (Fragment) n=1 Tax=Plancto...	[more]
A0A3D3RH75_9PLAN	3.140e-56	74.05	Uncharacterized protein (Fragment) n=1 Tax=Gimesia...	[more]
A6CDR8_9PLAN	8.790e-56	74.05	Uncharacterized protein n=6 Tax=Planctomycetaceae ...	[more]
A0A2E2C7J3_9PLAN	1.080e-54	74.05	Uncharacterized protein n=4 Tax=Planctomycetaceae ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig124892	contig	M-pyrifera_M_contig124892:120..515 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	196.8
Seed ortholog evalue	6.3e-48
Seed eggNOG ortholog	344747.PM8797T_08449
Hectar predicted targeting category	other localisation
EggNOG OGs	2C710@1,2IZYQ@203682,32RI4@2
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	396
Cds size	396
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815765.8030417-CDS-M-pyrifera_M_contig124892:119..515	1622815765.8030417-CDS-M-pyrifera_M_contig124892:119..515	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig124892 120..515 -
1692277559.1614106-CDS-M-pyrifera_M_contig124892:119..515	1692277559.1614106-CDS-M-pyrifera_M_contig124892:119..515	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig124892 120..515 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig124892.5059.1	prot_M-pyrifera_M_contig124892.5059.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig124892 120..515 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig124892:120..515-
coding sequence from alignment at M-pyrifera_M_contig124892:120..515-

protein sequence of mRNA_M-pyrifera_M_contig124892.5059.1

>prot_M-pyrifera_M_contig124892.5059.1 ID=prot_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNA
LVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKT
PSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP*

mRNA from alignment at M-pyrifera_M_contig124892:120..515-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig124892.5059.1 ID=mRNA_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig124892:120..515- (Macrocystis pyrifera P11B4 male)
CTGGATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCG
GAGCAACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAA
AATTCATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCC
CTGGTCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGC
GGATACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGT
TTGGCAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACT
CCCAGTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGA
TCGCGTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124892:120..515-

>mRNA_M-pyrifera_M_contig124892.5059.1 ID=mRNA_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig124892:120..515- (Macrocystis pyrifera P11B4 male)
CTGGATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCG
GAGCAACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAA
AATTCATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCC
CTGGTCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGC
GGATACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGT
TTGGCAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACT
CCCAGTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGA
TCGCGTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGACTGG
ATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCGGAGC
AACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAAAATT
CATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCCCTGG
TCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGCGGAT
ACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGTTTGG
CAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACTCCCA
GTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGATCGC
GTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGA