mRNA_M-pyrifera_M_contig124883.5055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124883.5055.1
Unique NamemRNA_M-pyrifera_M_contig124883.5055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A2V5HP97_9EURO (YjeF N-terminal domain-containing protein (Fragment) n=1 Tax=Aspergillus indologenus CBS 114.80 TaxID=1450541 RepID=A0A2V5HP97_9EURO)

HSP 1 Score: 80.9 bits (198), Expect = 2.280e-18
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEY---GGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF L  LMELAGL+V+QAV+  +    G+ + V+CGPGNNGGDGLVAARHL+HFG +  V YPK
Sbjct:   18 GFSLDQLMELAGLSVSQAVYRIHPPSAGKNILVICGPGNNGGDGLVAARHLAHFGYNPKVYYPK 81
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BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A5J4Z7J3_PORPP (NAD(P)H-hydrate epimerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7J3_PORPP)

HSP 1 Score: 83.2 bits (204), Expect = 6.740e-18
Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEY--------GGRRVTVL--CGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF L  LMELAGLAVAQA +A Y         G +V V+  CGPGNNGGDGLVAARHL HFG  V VVYPK
Sbjct:   32 GFTLEQLMELAGLAVAQATYAHYVAPGQNSVPGEKVNVVVCCGPGNNGGDGLVAARHLHHFGVPVSVVYPK 102
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BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A0C2H2L0_9BILA (NAD(P)H-hydrate epimerase n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2H2L0_9BILA)

HSP 1 Score: 80.9 bits (198), Expect = 6.890e-18
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF +  LMELAGLA A+AV A+Y   +V VLCGPGNNGGDG V ARHL  FG    +VYPK
Sbjct:   55 GFKVEQLMELAGLACAKAVHAQYSKGKVLVLCGPGNNGGDGFVCARHLQQFGFEPSIVYPK 115
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BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A0G4FM11_VITBC (NAD(P)H-hydrate epimerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FM11_VITBC)

HSP 1 Score: 82.8 bits (203), Expect = 7.200e-18
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAV--FAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF L  LMELAGL+VAQAV   ++    ++ VLCGPGNNGGDGLVAARHL HFG  V VVYPK
Sbjct:   24 GFCLEQLMELAGLSVAQAVQDLSQQSSMQIVVLCGPGNNGGDGLVAARHLFHFGHDVTVVYPK 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A370TZ71_9HELO (NAD(P)H-hydrate epimerase n=1 Tax=Venustampulla echinocandica TaxID=2656787 RepID=A0A370TZ71_9HELO)

HSP 1 Score: 82.0 bits (201), Expect = 1.310e-17
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVF---AEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF L  LMELAGL+V+QAV+   +  GGRR+ V+CGPGNNGGDGLVAARHL H+G    + YPK
Sbjct:   23 GFSLDQLMELAGLSVSQAVYRLKSPIGGRRILVVCGPGNNGGDGLVAARHLWHYGYKPVIYYPK 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A1I7XRR7_HETBA (NAD(P)H-hydrate epimerase n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XRR7_HETBA)

HSP 1 Score: 83.2 bits (204), Expect = 1.960e-17
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF +  LMELAGLA A+AV+ +Y   RV VLCGPGNNGGDG V ARHL HFG    +VYPK
Sbjct:   52 GFKVDQLMELAGLAAAKAVYEQYSKGRVLVLCGPGNNGGDGFVCARHLMHFGFDPVIVYPK 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A7S4CGZ0_9EUGL (NAD(P)H-hydrate epimerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGZ0_9EUGL)

HSP 1 Score: 81.3 bits (199), Expect = 2.410e-17
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF +  LMELAGL+VA AV  +Y   ++ ++CGPGNNGGDGLVAARHL HFG +V +VYPK
Sbjct:   28 GFSIDCLMELAGLSVACAVQKQYTPCKLCIVCGPGNNGGDGLVAARHLCHFGFTVTIVYPK 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A368GPI7_ANCCA (NAD(P)H-hydrate epimerase n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368GPI7_ANCCA)

HSP 1 Score: 80.9 bits (198), Expect = 2.640e-17
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF +  LMELAGLA A+AV A+Y   +V VLCGPGNNGGDG V ARHL  FG    +VYPK
Sbjct:   18 GFKVEQLMELAGLACAKAVHAQYSKGKVLVLCGPGNNGGDGFVCARHLQQFGFEPSIVYPK 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: A0A1L9WGN6_ASPA1 (NAD(P)H-hydrate epimerase n=8 Tax=Aspergillus TaxID=5052 RepID=A0A1L9WGN6_ASPA1)

HSP 1 Score: 81.3 bits (199), Expect = 2.710e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEY---GGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF L  LMELAGL+V+QAV+  +    G+ + VLCGPGNNGGDGLVAARHL+HFG +  + YPK
Sbjct:   23 GFSLDQLMELAGLSVSQAVYRIHPPSAGKNILVLCGPGNNGGDGLVAARHLAHFGYNPTIYYPK 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Match: NNRE_CAEBR (NAD(P)H-hydrate epimerase n=2 Tax=Caenorhabditis TaxID=6237 RepID=NNRE_CAEBR)

HSP 1 Score: 80.9 bits (198), Expect = 3.500e-17
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 GFPLASLMELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDVVYPK 183
            GF +  LMELAGLA AQA+ A Y   +V VLCGPGNNGGDG V ARHL  FG +  +VYPK
Sbjct:   30 GFKVEQLMELAGLASAQAIAAHYPKSKVAVLCGPGNNGGDGFVCARHLQQFGFNPSIVYPK 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124883.5055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V5HP97_9EURO2.280e-1862.50YjeF N-terminal domain-containing protein (Fragmen... [more]
A0A5J4Z7J3_PORPP6.740e-1864.79NAD(P)H-hydrate epimerase n=1 Tax=Porphyridium pur... [more]
A0A0C2H2L0_9BILA6.890e-1863.93NAD(P)H-hydrate epimerase n=1 Tax=Ancylostoma duod... [more]
A0A0G4FM11_VITBC7.200e-1868.25NAD(P)H-hydrate epimerase n=2 Tax=Vitrella brassic... [more]
A0A370TZ71_9HELO1.310e-1764.06NAD(P)H-hydrate epimerase n=1 Tax=Venustampulla ec... [more]
A0A1I7XRR7_HETBA1.960e-1765.57NAD(P)H-hydrate epimerase n=1 Tax=Heterorhabditis ... [more]
A0A7S4CGZ0_9EUGL2.410e-1763.93NAD(P)H-hydrate epimerase n=1 Tax=Eutreptiella gym... [more]
A0A368GPI7_ANCCA2.640e-1763.93NAD(P)H-hydrate epimerase n=1 Tax=Ancylostoma cani... [more]
A0A1L9WGN6_ASPA12.710e-1762.50NAD(P)H-hydrate epimerase n=8 Tax=Aspergillus TaxI... [more]
NNRE_CAEBR3.500e-1763.93NAD(P)H-hydrate epimerase n=2 Tax=Caenorhabditis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124883contigM-pyrifera_M_contig124883:283..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog3055.EDP02683
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K17759
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004733,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006081,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0016853,GO:0016854,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0031974,GO:0031981,GO:0034356,GO:0034641,GO:0034654,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0052856,GO:0052857,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
EggNOG OGs34GQP@3041,37KAJ@33090,COG0062@1,COG0259@1,KOG2585@2759,KOG2586@2759
EC1.4.3.5,5.1.99.6
COG Functional cat.H
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size183
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.6573122-UTR-M-pyrifera_M_contig124883:282..3031622815765.6573122-UTR-M-pyrifera_M_contig124883:282..303Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124883 283..303 +
1692277559.10752-UTR-M-pyrifera_M_contig124883:282..3031692277559.10752-UTR-M-pyrifera_M_contig124883:282..303Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124883 283..303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.6746266-CDS-M-pyrifera_M_contig124883:303..4651622815765.6746266-CDS-M-pyrifera_M_contig124883:303..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124883 304..465 +
1692277559.1227834-CDS-M-pyrifera_M_contig124883:303..4651692277559.1227834-CDS-M-pyrifera_M_contig124883:303..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124883 304..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124883.5055.1prot_M-pyrifera_M_contig124883.5055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124883 304..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124883.5055.1

>prot_M-pyrifera_M_contig124883.5055.1 ID=prot_M-pyrifera_M_contig124883.5055.1|Name=mRNA_M-pyrifera_M_contig124883.5055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MELAGLAVAQAVFAEYGGRRVTVLCGPGNNGGDGLVAARHLSHFGCSVDV
VYPK
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mRNA from alignment at M-pyrifera_M_contig124883:283..465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124883.5055.1 ID=mRNA_M-pyrifera_M_contig124883.5055.1|Name=mRNA_M-pyrifera_M_contig124883.5055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig124883:283..465+ (Macrocystis pyrifera P11B4 male)
GGCTTTCCGTTGGCCAGTTTGATGGAGCTTGCGGGCTTGGCAGTGGCGCA
GGCCGTGTTTGCGGAGTATGGCGGGCGGAGGGTAACGGTGCTGTGTGGTC
CCGGGAACAATGGCGGGGACGGCTTGGTGGCGGCAAGACACCTCTCCCAC
TTCGGATGCTCCGTGGACGTCGTGTACCCCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124883:283..465+

>mRNA_M-pyrifera_M_contig124883.5055.1 ID=mRNA_M-pyrifera_M_contig124883.5055.1|Name=mRNA_M-pyrifera_M_contig124883.5055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig124883:283..465+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTTGCGGGCTTGGCAGTGGCGCAGGCCGTGTTTGCGGAGTATGG
CGGGCGGAGGGTAACGGTGCTGTGTGGTCCCGGGAACAATGGCGGGGACG
GCTTGGTGGCGGCAAGACACCTCTCCCACTTCGGATGCTCCGTGGACGTC
GTGTACCCCAAGATGGAGCTTGCGGGCTTGGCAGTGGCGCAGGCCGTGTT
TGCGGAGTATGGCGGGCGGAGGGTAACGGTGCTGTGTGGTCCCGGGAACA
ATGGCGGGGACGGCTTGGTGGCGGCAAGACACCTCTCCCACTTCGGATGC
TCCGTGGACGTCGTGTACCCCAAG
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