mRNA_M-pyrifera_M_contig124828.5045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124828.5045.1
Unique NamemRNA_M-pyrifera_M_contig124828.5045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124828.5045.1 vs. uniprot
Match: J9IPG2_9SPIT (Myosin heavy chain n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IPG2_9SPIT)

HSP 1 Score: 63.2 bits (152), Expect = 7.600e-10
Identity = 30/59 (50.85%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   52 EVRYRETIHHLRSQVDASRRQSRSLRAQLVRQQGQRAELEGFFLQCVEQVRKEVGRRRA 228
            E++Y ETI HL++Q+D+ ++ +RSLRA+ V    QR ELE FFLQC+E+VRK++ +R++
Sbjct:  381 EIKYAETIRHLKNQIDSEKKNARSLRAEKVNFMMQRNELEEFFLQCIEEVRKDIVKRKS 439
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BLAST of mRNA_M-pyrifera_M_contig124828.5045.1 vs. uniprot
Match: A0A078AJT9_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AJT9_STYLE)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-9
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   52 EVRYRETIHHLRSQVDASRRQSRSLRAQLVRQQGQRAELEGFFLQCVEQVRKEVGRRRA 228
            E++Y ETI HL++Q+D+ ++ +RSLRA  V    QR ELE FFLQC+E+VRK++ +R++
Sbjct:  355 EIKYTETIRHLKNQIDSEKKNARSLRADKVNFMMQRNELEEFFLQCIEEVRKDIVKRKS 413
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BLAST of mRNA_M-pyrifera_M_contig124828.5045.1 vs. uniprot
Match: A0A0G4F1I2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F1I2_VITBC)

HSP 1 Score: 52.0 bits (123), Expect = 6.470e-6
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   52 EVRYRETIHHLRSQVDASRRQSRSLRAQLVRQQGQRAELEGFFLQCVEQVRKEVGRRRAR 231
            E RY E I+ L++QV+  ++  R+LR       G+R+ELE FFL+C+++VR+E+ RRR R
Sbjct:  281 EGRYVEQINKLKAQVEKQKKTIRTLRTSASHAYGERSELEEFFLKCIDEVRREISRRRHR 340
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BLAST of mRNA_M-pyrifera_M_contig124828.5045.1 vs. uniprot
Match: A0A0G4I486_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I486_9ALVE)

HSP 1 Score: 52.0 bits (123), Expect = 6.510e-6
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   52 EVRYRETIHHLRSQVDASRRQSRSLRAQLVRQQGQRAELEGFFLQCVEQVRKEVGRRR 225
            E +Y ETI  L++Q++  R+ +RSLR+        R+ELE FFLQCVE+VR++V RRR
Sbjct:  351 ERQYLETIARLKTQLEKERQTNRSLRSAKTSAYADRSELESFFLQCVEEVRRDVIRRR 408
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124828.5045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
J9IPG2_9SPIT7.600e-1050.85Myosin heavy chain n=2 Tax=Oxytricha trifallax Tax... [more]
A0A078AJT9_STYLE1.420e-950.85Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A0G4F1I2_VITBC6.470e-645.00Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4I486_9ALVE6.510e-650.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124828contigM-pyrifera_M_contig124828:257..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.2626796-CDS-M-pyrifera_M_contig124828:256..4871622815765.2626796-CDS-M-pyrifera_M_contig124828:256..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124828 257..487 -
1692277558.9437153-CDS-M-pyrifera_M_contig124828:256..4871692277558.9437153-CDS-M-pyrifera_M_contig124828:256..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124828 257..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124828.5045.1prot_M-pyrifera_M_contig124828.5045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124828 257..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124828.5045.1

>prot_M-pyrifera_M_contig124828.5045.1 ID=prot_M-pyrifera_M_contig124828.5045.1|Name=mRNA_M-pyrifera_M_contig124828.5045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MEAAAAPPPAALLPPAAEVRYRETIHHLRSQVDASRRQSRSLRAQLVRQQ
GQRAELEGFFLQCVEQVRKEVGRRRAR
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mRNA from alignment at M-pyrifera_M_contig124828:257..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124828.5045.1 ID=mRNA_M-pyrifera_M_contig124828.5045.1|Name=mRNA_M-pyrifera_M_contig124828.5045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig124828:257..487- (Macrocystis pyrifera P11B4 male)
ATGGAGGCAGCGGCCGCTCCGCCGCCCGCCGCGCTGCTGCCGCCCGCCGC
GGAGGTTCGGTACCGAGAGACGATCCACCACCTGCGGTCGCAGGTGGACG
CGTCGCGGCGGCAGTCCCGCTCGCTGCGCGCGCAGCTGGTGCGGCAGCAG
GGCCAGCGGGCGGAGCTGGAGGGCTTCTTCCTGCAGTGCGTGGAGCAGGT
GCGCAAGGAGGTGGGTCGGCGGCGGGCGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124828:257..487-

>mRNA_M-pyrifera_M_contig124828.5045.1 ID=mRNA_M-pyrifera_M_contig124828.5045.1|Name=mRNA_M-pyrifera_M_contig124828.5045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig124828:257..487- (Macrocystis pyrifera P11B4 male)
ATGGAGGCAGCGGCCGCTCCGCCGCCCGCCGCGCTGCTGCCGCCCGCCGC
GGAGGTTCGGTACCGAGAGACGATCCACCACCTGCGGTCGCAGGTGGACG
CGTCGCGGCGGCAGTCCCGCTCGCTGCGCGCGCAGCTGGTGCGGCAGCAG
GGCCAGCGGGCGGAGCTGGAGGGCTTCTTCCTGCAGTGCGTGGAGCAGGT
GCGCAAGGAGGTGGGTCGGCGGCGGGCGCGTATGGAGGCAGCGGCCGCTC
CGCCGCCCGCCGCGCTGCTGCCGCCCGCCGCGGAGGTTCGGTACCGAGAG
ACGATCCACCACCTGCGGTCGCAGGTGGACGCGTCGCGGCGGCAGTCCCG
CTCGCTGCGCGCGCAGCTGGTGCGGCAGCAGGGCCAGCGGGCGGAGCTGG
AGGGCTTCTTCCTGCAGTGCGTGGAGCAGGTGCGCAAGGAGGTGGGTCGG
CGGCGGGCGCGT
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