mRNA_M-pyrifera_M_contig124825.5043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124825.5043.1
Unique NamemRNA_M-pyrifera_M_contig124825.5043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A7S1C3D0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3D0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.810e-12
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  112 GQRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            GQRW +L  FSLLSF Q   W+T SP A   ++ YG+    +DLLLNWGPIIFV
Sbjct:    4 GQRWYILAAFSLLSFQQCLFWITFSPVAQATEKYYGVDVDAVDLLLNWGPIIFV 57
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A816G8C7_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816G8C7_9BILA)

HSP 1 Score: 67.4 bits (163), Expect = 1.780e-11
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   85 TYAGKTGVSGQRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            T+A K  V   R+ VL  FSLL+F Q  +WLT SP A   +  Y + +  +DLLLNWGPIIF+
Sbjct:   17 TFAYK--VYSSRFYVLFVFSLLAFNQCTIWLTFSPIARNTENYYNITEATVDLLLNWGPIIFI 77
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A817GBK0_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817GBK0_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 5.620e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   37 TPLLETDGADSVGELETYAGKTGVSGQRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            +P ++ D  +  G    Y        QR+ VL  F+ L+F Q+  WLT SP A +A++ Y + +  +DLLLNWGPIIF+
Sbjct:    3 SPQIQNDLGNDGGSFRVYP-------QRFWVLFMFAFLTFNQTMFWLTFSPIAGSAQKFYNISEATVDLLLNWGPIIFL 74
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A814PQ63_9BILA (Hypothetical protein n=16 Tax=Adineta steineri TaxID=433720 RepID=A0A814PQ63_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 5.650e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  118 RWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            R+ VL  FS LSF Q  +WLT SP A + +  YG+ +  +DLLLNWGPIIF+
Sbjct:   27 RFYVLFAFSFLSFNQCLIWLTFSPIARSTQIYYGISESTVDLLLNWGPIIFI 78
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A815Q6G9_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A815Q6G9_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 5.820e-11
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  115 QRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            QR+ VL  F LLSF Q+ +WLT SP A + +  Y + +  +DLLLNWGPIIF+
Sbjct:   22 QRFYVLTVFCLLSFNQNLIWLTFSPIARSTESYYKISEATVDLLLNWGPIIFI 74
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A820SY92_9BILA (Hypothetical protein n=9 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A820SY92_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 7.720e-11
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  115 QRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            QR+ VL  FS L+F Q  +WLT SP A +A+  Y + +  +DLLLNWGPIIF+
Sbjct:   26 QRFYVLFIFSFLAFNQCLMWLTFSPIARSAEAYYNISEATVDLLLNWGPIIFI 78
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A814PR18_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A814PR18_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  115 QRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            QR+ VL  F LLSF Q+ +WLT SP A + +  Y + +  +DLLLNWGPIIF+
Sbjct:   22 QRFYVLTVFCLLSFNQNLIWLTFSPIARSTETYYKISEATVDLLLNWGPIIFI 74
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BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A817A1I2_9BILA (Hypothetical protein n=7 Tax=Rotaria TaxID=231623 RepID=A0A817A1I2_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 1.440e-10
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  115 QRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            QR+ VL  FS L+F Q  +WLT SP A + +  Y + +  +DLLLNWGPIIFV
Sbjct:   26 QRFYVLFMFSFLAFNQCLIWLTFSPIARSTEVYYNISEATVDLLLNWGPIIFV 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A815VSJ0_ADIRI (Hypothetical protein n=4 Tax=Adineta ricciae TaxID=249248 RepID=A0A815VSJ0_ADIRI)

HSP 1 Score: 65.5 bits (158), Expect = 1.970e-10
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  115 QRWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            QR+ +L  FS LSF Q  +WLT SP A + +  Y + +  +DLLLNWGPIIF+
Sbjct:   25 QRFYILFVFSFLSFNQCIMWLTFSPIARSTETYYNVTEATVDLLLNWGPIIFI 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Match: A0A813RS36_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813RS36_ADIRI)

HSP 1 Score: 65.5 bits (158), Expect = 1.970e-10
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  118 RWVVLLCFSLLSFTQSAVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV 273
            R+ VL  FSLL+F Q  +WLT SP A   +  Y + +  IDLLLNWGPIIF+
Sbjct:   24 RFYVLFVFSLLAFNQCLIWLTFSPIARATEAYYNITESTIDLLLNWGPIIFI 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124825.5043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C3D0_9STRA1.810e-1257.41Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A816G8C7_9BILA1.780e-1149.21Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A817GBK0_9BILA5.620e-1139.24Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A814PQ63_9BILA5.650e-1153.85Hypothetical protein n=16 Tax=Adineta steineri Tax... [more]
A0A815Q6G9_9BILA5.820e-1152.83Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]
A0A820SY92_9BILA7.720e-1152.83Hypothetical protein n=9 Tax=unclassified Rotaria ... [more]
A0A814PR18_9BILA1.050e-1052.83Hypothetical protein n=5 Tax=Adineta steineri TaxI... [more]
A0A817A1I2_9BILA1.440e-1052.83Hypothetical protein n=7 Tax=Rotaria TaxID=231623 ... [more]
A0A815VSJ0_ADIRI1.970e-1050.94Hypothetical protein n=4 Tax=Adineta ricciae TaxID... [more]
A0A813RS36_ADIRI1.970e-1053.85Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124825contigM-pyrifera_M_contig124825:23..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score64.3
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog30611.ENSOGAP00000011159
Preferred nameDIRC2
KEGG koko:K15381
KEGG TC2.A.1.28
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Disrupted in renal carcinoma
EggNOG OGs35I8Q@314146,38E18@33154,3BBKP@33208,3D0XS@33213,3JA9C@40674,48A8Q@7711,48V2W@7742,4MAN8@9443,KOG2563@1,KOG2563@2759
COG Functional cat.S
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size273
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124825.5043.1prot_M-pyrifera_M_contig124825.5043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124825 23..319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.147181-CDS-M-pyrifera_M_contig124825:22..721622815765.147181-CDS-M-pyrifera_M_contig124825:22..72Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124825 23..72 -
1692277558.9032745-CDS-M-pyrifera_M_contig124825:22..721692277558.9032745-CDS-M-pyrifera_M_contig124825:22..72Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124825 23..72 -
1622815765.160663-CDS-M-pyrifera_M_contig124825:111..3191622815765.160663-CDS-M-pyrifera_M_contig124825:111..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124825 112..319 -
1692277558.9130538-CDS-M-pyrifera_M_contig124825:111..3191692277558.9130538-CDS-M-pyrifera_M_contig124825:111..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124825 112..319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.1766205-UTR-M-pyrifera_M_contig124825:319..3341622815765.1766205-UTR-M-pyrifera_M_contig124825:319..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124825 320..334 -
1692277558.9230275-UTR-M-pyrifera_M_contig124825:319..3341692277558.9230275-UTR-M-pyrifera_M_contig124825:319..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124825 320..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124825.5043.1

>prot_M-pyrifera_M_contig124825.5043.1 ID=prot_M-pyrifera_M_contig124825.5043.1|Name=mRNA_M-pyrifera_M_contig124825.5043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MTVAAGDTPLLETDGADSVGELETYAGKTGVSGQRWVVLLCFSLLSFTQS
AVWLTLSPFAATAKEMYGLCQFQIDLLLNWGPIIFV
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mRNA from alignment at M-pyrifera_M_contig124825:23..334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124825.5043.1 ID=mRNA_M-pyrifera_M_contig124825.5043.1|Name=mRNA_M-pyrifera_M_contig124825.5043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig124825:23..334- (Macrocystis pyrifera P11B4 male)
CGGGAGAATCGCGACATGACTGTTGCAGCCGGCGATACGCCGCTGTTGGA
GACAGATGGGGCGGATAGCGTGGGGGAGTTGGAGACGTATGCTGGGAAGA
CGGGCGTGAGCGGACAGAGATGGGTGGTCCTGCTGTGCTTCTCGCTGCTG
AGCTTCACGCAATCCGCGGTTTGGTTGACATTGTCTCCATTCGCCGCCAC
GGCGAAGGAGATGTACGGGCTGTGTCACTCACATGCAGAGTGCCACAATG
ACGATGGCCCAGGCCAGTTTCAGATCGATTTGCTGCTCAACTGGGGCCCC
ATCATCTTCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124825:23..334-

>mRNA_M-pyrifera_M_contig124825.5043.1 ID=mRNA_M-pyrifera_M_contig124825.5043.1|Name=mRNA_M-pyrifera_M_contig124825.5043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig124825:23..334- (Macrocystis pyrifera P11B4 male)
ATGACTGTTGCAGCCGGCGATACGCCGCTGTTGGAGACAGATGGGGCGGA
TAGCGTGGGGGAGTTGGAGACGTATGCTGGGAAGACGGGCGTGAGCGGAC
AGAGATGGGTGGTCCTGCTGTGCTTCTCGCTGCTGAGCTTCACGCAATCC
GCGGTTTGGTTGACATTGTCTCCATTCGCCGCCACGGCGAAGGAGATGTA
CGGGCTGTATGACTGTTGCAGCCGGCGATACGCCGCTGTTGGAGACAGAT
GGGGCGGATAGCGTGGGGGAGTTGGAGACGTATGCTGGGAAGACGGGCGT
GAGCGGACAGAGATGGGTGGTCCTGCTGTGCTTCTCGCTGCTGAGCTTCA
CGCAATCCGCGGTTTGGTTGACATTGTCTCCATTCGCCGCCACGGCGAAG
GAGATGTACGGGCTGTGCCAGTTTCAGATCGATTTGCTGCTCAACTGGGG
CCCCATCATCTTCGTTGCCAGTTTCAGATCGATTTGCTGCTCAACTGGGG
CCCCATCATCTTCGTT
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