mRNA_M-pyrifera_M_contig124818.5042.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124818.5042.1
Unique NamemRNA_M-pyrifera_M_contig124818.5042.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A1V9YJR6_9STRA (Short-chain dehydrogenase/reductase family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJR6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.040e-42
Identity = 83/145 (57.24%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   10 TQANGFGKKTTAEEV--IRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLL 438
            T A  FG  TTAE+V  +  A+  GKVV+ITGAN+G+GLETARVL+   A VV+ CRS DKGE A+  I   H EA++S  QLDLASLAS+R  AA  +   E++DILINNAG+MA P   T DG+E Q G NH+GHF  T LLL
Sbjct:   10 TSAEAFGPTTTAEQVADVFAAEAPGKVVLITGANTGLGLETARVLSAKGASVVIACRSTDKGEAAVASIVQAHPEAKVSFLQLDLASLASIRSFAAAFSANYERLDILINNAGVMACPKSTTTDGLETQFGVNHVGHFYLTKLLL 154          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A813A7V3_9DINO (RDH13 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A7V3_9DINO)

HSP 1 Score: 144 bits (364), Expect = 1.450e-40
Identity = 75/129 (58.14%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   67 DLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVKA 453
            D+SGKV++ITGAN+GIG ETAR +A     VVM CRS ++  +A++ I+A H EAQL   QLDLAS  S+RKAAAE   K +K+ +LINNAGIM  P   TK+G E Q+G NHIGHFL T+LLL+++KA
Sbjct:   42 DMSGKVILITGANTGIGRETARTIAGLGGLVVMACRSEERAREAMKDIEATHPEAQLEFLQLDLASFDSIRKAAAEFKAKHDKLHVLINNAGIMMCPEWRTKEGFEMQVGVNHIGHFLLTSLLLDSLKA 170          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A6C1MVF2_9GAMM (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A6C1MVF2_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 1.670e-40
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   67 DLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVKA 453
            DLS + V++TGANSG+GLE+AR+L+ H A VVM CR ++KG+ A++ I+  H EA+L L  LDLA LASVR+      +  +++DILINNAG+MA P  +TKDG E Q GTNH+GHF  T LLLET++A
Sbjct:   15 DLSNQTVIVTGANSGLGLESARMLSSHGATVVMACRDLNKGKAAMEDIRGDHPEAKLELMALDLADLASVRQFTDTFKQHYDRLDILINNAGVMAPPLQHTKDGFEMQFGTNHLGHFALTGLLLETLEA 143          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A2R6Q8E5_ACTCC (Short-chain dehydrogenase n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q8E5_ACTCC)

HSP 1 Score: 146 bits (369), Expect = 2.340e-40
Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1
Query:    1 MGNTQANGFGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVKA 453
            +G    +GF   +TAE+V +  D +G   ++TGA+SGIG ETARVLALH   V+M  R+MD G K  + I  +  EA++ + +LDL S+ SVRK A+E       +++LINNAG+MA P+  T+D IE Q GTNHIGHFL TNLLLET+K+
Sbjct:    4 LGRKGPSGFSACSTAEQVTQGIDATGLTAIVTGASSGIGTETARVLALHGVHVIMAVRNMDSGRKVKEAILKEKPEAKIDVMELDLGSMESVRKFASEYKSSGLPLNVLINNAGVMAPPFMLTQDNIELQFGTNHIGHFLLTNLLLETMKS 154          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A7K1Z9A4_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z9A4_9ACTN)

HSP 1 Score: 146 bits (368), Expect = 2.540e-40
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 1
Query:   34 KTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVKA 453
            K TAE++    D +G+V ++TGANSG+GLETAR LA   A VV+  R++DKG++A+  I++ H  AQL LQQLDLASL SVR A+ E+  + E+ID+LINNAG+M TP   T DG E Q GTNH+GHF  T  LLE + A
Sbjct:    5 KWTAEDI---GDQTGRVAIVTGANSGLGLETARALAGRGASVVLAVRNLDKGKQAVDDIRSDHGGAQLELQQLDLASLDSVRDASEEIRSRFERIDLLINNAGVMYTPRQKTADGFEMQFGTNHLGHFALTGRLLERLLA 141          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A0D2R333_GOSRA (Uncharacterized protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A0D2R333_GOSRA)

HSP 1 Score: 143 bits (361), Expect = 1.190e-39
Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 1
Query:   16 ANGFGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVK 450
            A+GF   +TAEEV +  D +G   V+TGA+SGIG ETARVLAL    VVM  ++M  G +  + I  ++  A++   +LDL+SLASVRK AA+       ++ILINNAGIMATP+  +KDGIE QL TNH+GHFL T+LLLET+K
Sbjct:    9 ASGFSASSTAEEVTQGIDGTGLTAVVTGASSGIGTETARVLALRGVHVVMAVKNMPTGREVKETIAKRNPNAKIDAMELDLSSLASVRKFAADFISSGLPLNILINNAGIMATPFMLSKDGIELQLATNHVGHFLLTHLLLETMK 153          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: UPI001FAC272D (oxidoreductase n=1 Tax=Geothrix sp. SG184 TaxID=2922720 RepID=UPI001FAC272D)

HSP 1 Score: 144 bits (363), Expect = 1.720e-39
Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 1
Query:   67 DLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVKA 453
            D +G+V V+TGA SG G E AR+LA  +A VV+ CR+  K E+A + IQA H  A++ +Q LDLASLASVR+AAAEL  + +++D+L+NNAG+M  PYG T+DG E QLGTNH G F+ T LLLE + A
Sbjct:   13 DQTGRVAVVTGATSGTGFEAARILAARRATVVLACRNQPKAEEAARRIQALHPGARVEVQALDLASLASVRRAAAELQARFDRLDLLLNNAGVMIPPYGKTEDGFETQLGTNHFGPFVLTGLLLERLMA 141          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: W1NHL6_AMBTC (Uncharacterized protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NHL6_AMBTC)

HSP 1 Score: 144 bits (363), Expect = 1.800e-39
Identity = 75/150 (50.00%), Postives = 107/150 (71.33%), Query Frame = 1
Query:    1 MGNTQANGFGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVK 450
            +G    +GF   +TAE+V    D +G   ++TGA+SGIG+ETARVLAL  A+V++  R++  G++  +GI  ++  A+L + +LDL+S+ASVRK A+E       ++ILINNAGIMATP+  ++DGIE Q  TNH+GHFL TNLLLET+K
Sbjct:    5 LGRKGPSGFSYSSTAEQVTEGIDATGLTAIVTGASSGIGIETARVLALRGAQVIIAVRNVAAGQEVKEGIIKENTSAKLDVMELDLSSMASVRKFASEFISLDLPLNILINNAGIMATPFMLSQDGIELQFATNHLGHFLLTNLLLETMK 154          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A7S3GEV2_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GEV2_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 1.970e-39
Identity = 73/141 (51.77%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   25 FGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETV 447
            FGK++TA EV    DL+GK+VVITGAN+GIG ETARV+A H AE+V+ CRS ++   A++ I  ++  A++S   LDL  L S++  A +   K ++IDILINNAG+MA P   TKDG + Q GTNH+GHF  T LL +T+
Sbjct:   14 FGKRSTAAEVCEGHDLTGKIVVITGANTGIGKETARVMAKHGAEIVIGCRSEERAAGAIKDIMDENPSAKISNIPLDLGDLKSIKSFADQFLSKYDRIDILINNAGVMACPKATTKDGFDMQFGTNHLGHFYLTKLLRDTI 154          
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Match: A0A251VA04_HELAN (Putative NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VA04_HELAN)

HSP 1 Score: 143 bits (361), Expect = 3.660e-39
Identity = 75/150 (50.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 MGNTQANGFGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHKAEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELAEKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVK 450
             G   A+GF   +TAE+V +  D +G   ++TGA+SGIG ET RVLALH   VVM  R+++ G+K  + I ++   A++ + +LDL+SLASVRK AAE       ++ILINNAG+MA P+  +KD IE Q  TNH+GHFL T LLLET+K
Sbjct:    4 FGRKGASGFSASSTAEDVTKGIDATGLTAIVTGASSGIGFETTRVLALHGVHVVMAVRNIESGQKVKENIVSEIPNAKVDVMELDLSSLASVRKFAAEFVSSNLPLNILINNAGVMAPPFTLSKDKIELQFATNHLGHFLLTELLLETMK 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124818.5042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YJR6_9STRA1.040e-4257.24Short-chain dehydrogenase/reductase family protein... [more]
A0A813A7V3_9DINO1.450e-4058.14RDH13 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A6C1MVF2_9GAMM1.670e-4055.81SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2R6Q8E5_ACTCC2.340e-4050.33Short-chain dehydrogenase n=4 Tax=Actinidia TaxID=... [more]
A0A7K1Z9A4_9ACTN2.540e-4055.00SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]
A0A0D2R333_GOSRA1.190e-3953.79Uncharacterized protein n=4 Tax=Gossypium TaxID=36... [more]
UPI001FAC272D1.720e-3955.81oxidoreductase n=1 Tax=Geothrix sp. SG184 TaxID=29... [more]
W1NHL6_AMBTC1.800e-3950.00Uncharacterized protein n=2 Tax=Amborella trichopo... [more]
A0A7S3GEV2_9EUKA1.970e-3951.77Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A251VA04_HELAN3.660e-3950.00Putative NAD(P)-binding Rossmann-fold superfamily ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124818contigM-pyrifera_M_contig124818:65..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score146.4
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog13333.ERM94993
KEGG koko:K19329
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0016491,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0071944
EggNOG free text desc.Belongs to the short-chain dehydrogenases reductases (SDR) family
EggNOG OGs37Q3T@33090,3GBAM@35493,COG1028@1,KOG1208@2759
Ec32 ortholog descriptionGlucose/ribitol dehydrogenase
Ec32 orthologEc-12_007650.1
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.109802-CDS-M-pyrifera_M_contig124818:64..5171622815765.109802-CDS-M-pyrifera_M_contig124818:64..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124818 65..517 +
1692277558.8915935-CDS-M-pyrifera_M_contig124818:64..5171692277558.8915935-CDS-M-pyrifera_M_contig124818:64..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124818 65..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124818.5042.1prot_M-pyrifera_M_contig124818.5042.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124818 65..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124818.5042.1

>prot_M-pyrifera_M_contig124818.5042.1 ID=prot_M-pyrifera_M_contig124818.5042.1|Name=mRNA_M-pyrifera_M_contig124818.5042.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MGNTQANGFGKKTTAEEVIRDADLSGKVVVITGANSGIGLETARVLALHK
AEVVMCCRSMDKGEKALQGIQAKHAEAQLSLQQLDLASLASVRKAAAELA
EKLEKIDILINNAGIMATPYGNTKDGIEQQLGTNHIGHFLFTNLLLETVK
A
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mRNA from alignment at M-pyrifera_M_contig124818:65..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124818.5042.1 ID=mRNA_M-pyrifera_M_contig124818.5042.1|Name=mRNA_M-pyrifera_M_contig124818.5042.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig124818:65..517+ (Macrocystis pyrifera P11B4 male)
ATGGGAAACACGCAAGCGAACGGATTTGGGAAGAAGACCACCGCAGAGGA GGTCATTCGTGACGCAGACCTCAGCGGGAAGGTTGTGGTCATCACGGGCG CGAACAGCGGCATTGGCCTCGAGACTGCACGGGTGCTTGCGCTCCACAAG GCAGAGGTGGTCATGTGCTGCCGCAGCATGGACAAGGGAGAGAAGGCGCT GCAGGGCATCCAGGCAAAGCACGCCGAGGCACAGCTCTCTCTCCAGCAGC TGGACCTGGCCTCGCTTGCCAGCGTGAGGAAGGCAGCGGCCGAGCTGGCC GAGAAGCTGGAGAAGATCGACATTCTCATCAACAATGCCGGCATCATGGC CACTCCCTACGGCAACACGAAGGACGGCATTGAGCAGCAGCTGGGCACCA ACCACATTGGCCACTTCCTCTTCACCAACCTCCTCCTCGAGACCGTCAAG GCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124818:65..517+

>mRNA_M-pyrifera_M_contig124818.5042.1 ID=mRNA_M-pyrifera_M_contig124818.5042.1|Name=mRNA_M-pyrifera_M_contig124818.5042.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig124818:65..517+ (Macrocystis pyrifera P11B4 male)
ATGGGAAACACGCAAGCGAACGGATTTGGGAAGAAGACCACCGCAGAGGA
GGTCATTCGTGACGCAGACCTCAGCGGGAAGGTTGTGGTCATCACGGGCG
CGAACAGCGGCATTGGCCTCGAGACTGCACGGGTGCTTGCGCTCCACAAG
GCAGAGGTGGTCATGTGCTGCCGCAGCATGGACAAGGGAGAGAAGGCGCT
GCAGGGCATCCAGGCAAAGCACGCCGAGGCACAGCTCTCTCTCCAGCAGC
TGGACCTGGCCTCGCTTGCCAGCGTGAGGAAGGCAGCGGCCGAGCTGGCC
GAGAAGCTGGAGAAGATCGACATTCTCATCAACAATGCCGGCATCATGGC
CACTCCCTACGGCAACACGAAGGACGGCATTGAGCAGCAGCTGGGCACCA
ACCACATTGGCCACTTCCTCTTCACCAACCTCCTCCTCGAGACCGTCAAG
GCCATGGGAAACACGCAAGCGAACGGATTTGGGAAGAAGACCACCGCAGA
GGAGGTCATTCGTGACGCAGACCTCAGCGGGAAGGTTGTGGTCATCACGG
GCGCGAACAGCGGCATTGGCCTCGAGACTGCACGGGTGCTTGCGCTCCAC
AAGGCAGAGGTGGTCATGTGCTGCCGCAGCATGGACAAGGGAGAGAAGGC
GCTGCAGGGCATCCAGGCAAAGCACGCCGAGGCACAGCTCTCTCTCCAGC
AGCTGGACCTGGCCTCGCTTGCCAGCGTGAGGAAGGCAGCGGCCGAGCTG
GCCGAGAAGCTGGAGAAGATCGACATTCTCATCAACAATGCCGGCATCAT
GGCCACTCCCTACGGCAACACGAAGGACGGCATTGAGCAGCAGCTGGGCA
CCAACCACATTGGCCACTTCCTCTTCACCAACCTCCTCCTCGAGACCGTC
AAGGCC
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