prot_M-pyrifera_M_contig124807.5040.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig124807.5040.1
Unique Nameprot_M-pyrifera_M_contig124807.5040.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length70
Homology
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A397G5H5_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G5H5_9GLOM)

HSP 1 Score: 96.3 bits (238), Expect = 5.340e-24
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDGR 58
            SASLYVG+LDP V E++LF++F  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG+
Sbjct:   50 SASLYVGELDPSVTEAMLFELFNPVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDGK 106
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A1D1Z4W1_9ARAE (Polyadenylate-binding protein, cytoplasmic and nuclear (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z4W1_9ARAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.570e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   47 SASLYVGELDPSVTEAMLFEMFSSVGPVASIRVCRDAVTRRSLGYAYVNFHNVIDG 102
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A086TJV3_9FUNG (Polyadenylate-binding protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TJV3_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 3.700e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   53 SASLYVGELDPSVNEAMLFEMFNSVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A197KFZ8_9FUNG (Polyadenylate-binding protein n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197KFZ8_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 5.030e-22
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLY+G+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   60 SASLYIGELDPSVNEAMLFEMFNSVGPVASIRVCRDAVTRRSLGYAYVNFHNVADG 115
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A0B7NMG9_9FUNG (Polyadenylate-binding protein n=9 Tax=Mucorineae TaxID=1344963 RepID=A0A0B7NMG9_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 6.810e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  +GPVASIRVCRD VTRRSLGYAYVN+HNI DG
Sbjct:   44 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDG 99
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A2G4TA72_RHIZD (Polyadenylate-binding protein n=7 Tax=Rhizopus TaxID=4842 RepID=A0A2G4TA72_RHIZD)

HSP 1 Score: 97.1 bits (240), Expect = 6.820e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  +GPVASIRVCRD VTRRSLGYAYVN+HNI DG
Sbjct:   47 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIADG 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.850e-22
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITD 56
            SASLYVGDL PDV E+LLF++F  VGPVASIRVCRDTVTRRSLGYAYVN+HN+ D
Sbjct:   14 SASLYVGDLAPDVSEALLFEIFNAVGPVASIRVCRDTVTRRSLGYAYVNFHNVAD 68
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A1X2HWX9_SYNRA (Polyadenylate-binding protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HWX9_SYNRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.860e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   48 SASLYVGELDPSVTEAMLFEMFNMVGPVASIRVCRDAVTRRSLGYAYVNFHNVADG 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.900e-22
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITD 56
            SASLYVGDL PD+ ES LF++F QVGPVASIRVCRDT+TRRSLGYAYVN+HN+ D
Sbjct:   62 SASLYVGDLAPDITESTLFEIFNQVGPVASIRVCRDTITRRSLGYAYVNFHNVAD 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A433D2V3_9FUNG (Polyadenylate-binding protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2V3_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 6.910e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 57
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   50 SASLYVGELDPSVTEAMLFEMFNMVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDG 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397G5H5_9GLOM5.340e-2475.44RRM domain-containing protein n=1 Tax=Diversispora... [more]
A0A1D1Z4W1_9ARAE1.570e-2278.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
A0A086TJV3_9FUNG3.700e-2278.57Polyadenylate-binding protein n=1 Tax=Podila verti... [more]
A0A197KFZ8_9FUNG5.030e-2276.79Polyadenylate-binding protein n=2 Tax=Mortierellac... [more]
A0A0B7NMG9_9FUNG6.810e-2278.57Polyadenylate-binding protein n=9 Tax=Mucorineae T... [more]
A0A2G4TA72_RHIZD6.820e-2278.57Polyadenylate-binding protein n=7 Tax=Rhizopus Tax... [more]
A0A7S2V0G2_9STRA6.850e-2281.82Polyadenylate-binding protein n=2 Tax=Fibrocapsa j... [more]
A0A1X2HWX9_SYNRA6.860e-2278.57Polyadenylate-binding protein n=1 Tax=Syncephalast... [more]
A0A835YVH9_9STRA6.900e-2280.00Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A433D2V3_9FUNG6.910e-2278.57Polyadenylate-binding protein n=2 Tax=Jimgerdemann... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..67
e-value: 4.0E-5
score: 33.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..55
e-value: 3.0E-14
score: 52.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..56
score: 11.622
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..58
e-value: 8.7E-15
score: 56.8
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 3..57
NoneNo IPR availablePANTHERPTHR24012:SF760POLYADENYLATE-BINDING PROTEIN 4coord: 3..57
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124807contigM-pyrifera_M_contig124807:96..305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124807.5040.1mRNA_M-pyrifera_M_contig124807.5040.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig124807 93..305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig124807.5040.1 ID=prot_M-pyrifera_M_contig124807.5040.1|Name=mRNA_M-pyrifera_M_contig124807.5040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MSASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVN
YHNITDGRLRPPHIPLGSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf