mRNA_M-pyrifera_M_contig124795.5035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124795.5035.1
Unique NamemRNA_M-pyrifera_M_contig124795.5035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A3D1GBH8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GBH8_9BACT)

HSP 1 Score: 200 bits (508), Expect = 2.440e-56
Identity = 114/167 (68.26%), Postives = 138/167 (82.63%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISITSG 501
            YNSGDSPTAITS+I + DGDDTN++ ATI ITSNF + ED L FVDQ GITGSY+S TGILTLTGSSS ANYQTALRS+TYENT   P+E  RTISFT+NDG D+SNT TRNI+V KVN AP+LS++E  +IIY+AGNGQK I++++ V D DDT ++SA + I+SG
Sbjct:  127 YNSGDSPTAITSSIIVKDGDDTNLQSATIQITSNFAAGEDQLAFVDQLGITGSYASSTGILTLTGSSSLANYQTALRSVTYENTSGSPSELTRTISFTVNDGTDDSNTRTRNISVTKVNNAPTLSNIESTSIIYYAGNGQKQISNTLEVDDIDDTTLDSAFVQISSG 293          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A3M8G835_9BACT (DUF2341 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G835_9BACT)

HSP 1 Score: 194 bits (492), Expect = 3.800e-54
Identity = 107/167 (64.07%), Postives = 138/167 (82.63%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISITSG 501
            YNSGDSPT ITSAITL DG+DTN++ A+I IT NF  ++D L FVDQNGI+GSYSS TGILTLTG+SS ANYQTAL+SITYENT+P PT + RT+SFT+NDG D+SNT TR+I VVKVNI P L+++E   ++YFA +G++TITS++ V+D+D+ N++SA +  T G
Sbjct:  378 YNSGDSPTIITSAITLTDGNDTNLQSASIQITGNFVDTQDELGFVDQNGISGSYSSVTGILTLTGTSSVANYQTALQSITYENTNPDPTTATRTVSFTVNDGIDDSNTETRDITVVKVNIDPVLANIESSNLVYFASSGERTITSTIEVSDSDNANLDSAVVEFTFG 544          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A3D2IL23_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D2IL23_9BACT)

HSP 1 Score: 177 bits (449), Expect = 2.420e-53
Identity = 97/165 (58.79%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            +NSGDSP  ITS I + DGDD N+E A ISI++NF  +ED L F DQ GITGSY+SGTG+LTLTG+++ ANY+TA+RSITY N D  PTE+ RTIS T++DG D+SNTLTRNINVVKVN  P LS++E  ++ +F+G+  K +++++ ++D DDTN+ESA++ IT
Sbjct:   49 FNSGDSPKNITSTIDVSDGDDVNLESAEISISNNFALTEDELLFTDQLGITGSYASGTGVLTLTGTTTSANYETAIRSITYRNADTSPTENTRTISITVSDGTDDSNTLTRNINVVKVNNDPVLSNIESSSLFFFSGSSAKQVSNTIEISDIDDTNMESASLQIT 213          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A350PD42_9BACT (Cadherin domain-containing protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PD42_9BACT)

HSP 1 Score: 177 bits (449), Expect = 2.240e-48
Identity = 97/165 (58.79%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            +NSGDSP  ITS I + DGDD N+E A ISI++NF  +ED L F DQ GITGSY+SGTG+LTLTG+++ ANY+TA+RSITY N D  PTE+ RTIS T++DG D+SNTLTRNINVVKVN  P LS++E  ++ +F+G+  K +++++ ++D DDTN+ESA++ IT
Sbjct:  275 FNSGDSPKNITSTIDVSDGDDVNLESAEISISNNFALTEDELLFTDQLGITGSYASGTGVLTLTGTTTSANYETAIRSITYRNADTSPTENTRTISITVSDGTDDSNTLTRNINVVKVNNDPVLSNIESSSLFFFSGSSAKQVSNTIEISDIDDTNMESASLQIT 439          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A1B6Y9Y6_9BACT (Uncharacterized protein n=12 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y9Y6_9BACT)

HSP 1 Score: 177 bits (449), Expect = 2.320e-48
Identity = 97/165 (58.79%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            +NSGDSP  ITS I + DGDD N+E A ISI++NF  +ED L F DQ GITGSY+SGTG+LTLTG+++ ANY+TA+RSITY N D  PTE+ RTIS T++DG D+SNTLTRNINVVKVN  P LS++E  ++ +F+G+  K +++++ ++D DDTN+ESA++ IT
Sbjct:  380 FNSGDSPKNITSTIDVSDGDDVNLESAEISISNNFALTEDELLFTDQLGITGSYASGTGVLTLTGTTTSANYETAIRSITYRNADTSPTENTRTISITVSDGTDDSNTLTRNINVVKVNNDPVLSNIESSSLFFFSGSSAKQVSNTIEISDIDDTNMESASLQIT 544          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A2D5ZFH9_9BACT (CADG domain-containing protein (Fragment) n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5ZFH9_9BACT)

HSP 1 Score: 154 bits (389), Expect = 2.630e-40
Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            Y   D+PTA+T+ IT+ D DD NIE AT+ +T NF S EDVL F D NGI+G++  GTG LTLTGSS+ ANYQ ALR+++YENT   P+E  RT++FT+NDGD +SN++TR++ V   N  P LS +E  A+ Y  G+    ++++V V D DDT+ ESA + IT
Sbjct:  488 YGENDAPTAVTATITVTDVDDQNIESATVEVTGNFQSGEDVLAFTDANGISGTWDGGTGTLTLTGSSTLANYQAALRAVSYENTSDAPSELTRTLTFTVNDGDADSNSVTRDVTVTAANDVPVLSGIETAALSYTNGDPATAMSATVAVADVDDTDAESAVVQIT 652          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A3M8G6T4_9BACT (DUF2341 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G6T4_9BACT)

HSP 1 Score: 150 bits (378), Expect = 8.210e-39
Identity = 92/164 (56.10%), Postives = 119/164 (72.56%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISI 492
            YN GD   AITSAI L D DDT++E ATISIT+N+   ED L+F D   ITGS++SGTGILTL+G+ +KANYQ AL+++TYENT   P E  RTISF +NDGD++SNT TR+I VV  N AP LSS+E   + Y +   Q  IT+++VV+D DDT ++SA + I
Sbjct:  887 YNEGDGAVAITSAIALSDFDDTDMESATISITANYTLGEDFLDFTDTGNITGSFASGTGILTLSGTDTKANYQAALQAVTYENTSSDPVELTRTISFVVNDGDNDSNTETRDITVVAANSAPILSSIESDNLSYPSEAVQ--ITNTIVVSDPDDTFLDSAIVVI 1048          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A1B6YA02_9BACT (Big-1 domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6YA02_9BACT)

HSP 1 Score: 149 bits (375), Expect = 2.080e-38
Identity = 92/165 (55.76%), Postives = 118/165 (71.52%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            Y  G+    ITSAIT+ D DDTNIE ATISIT+N+   ED L+F D   I+GS++SG+GILTLTGS +KANYQTALR++TYENT   P +  RTISF INDGD+NSNT +R++ V  VN  P LSS+E   I Y     Q  IT++++V+D DDT ++SA + IT
Sbjct:  885 YTEGNGAVEITSAITVSDIDDTNIESATISITANYFLGEDFLDFTDTGNISGSFASGSGILTLTGSDTKANYQTALRAVTYENTSSDPVDLDRTISFVINDGDNNSNTQSRDVTVATVNSKPVLSSIESSNIPYPDAAVQ--ITNTIIVSDPDDTRLDSALVIIT 1047          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: UPI001A9ACB14 (GEVED domain-containing protein n=2 Tax=Desulfonema limicola TaxID=45656 RepID=UPI001A9ACB14)

HSP 1 Score: 146 bits (369), Expect = 1.360e-37
Identity = 89/167 (53.29%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISITSG 501
            Y   D   AITSAIT+ D D TNI GA I I++ F + EDVL F D   ITGS+ SGTGILTLTGS + ANYQ ALR++TYENT   P  + RT++FT+NDG  +SN  TR+IN+   N AP L++LE  A+ Y   +G   ITS++ V+D D TNI  A I I+SG
Sbjct: 1754 YTENDGAAAITSAITVSDADSTNITGAAIEISTGFVTGEDVLAFTDAAPITGSFDSGTGILTLTGSDTLANYQAALRAVTYENTSENPDTTTRTLTFTVNDGASDSNQPTRDINITAENDAPVLAALEAAAVEYTENDGAVAITSAITVSDADSTNITGAAIEISSG 1920          
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Match: A0A518LE15_9BACT (Cadherin domain protein n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518LE15_9BACT)

HSP 1 Score: 145 bits (367), Expect = 2.510e-37
Identity = 81/165 (49.09%), Postives = 117/165 (70.91%), Query Frame = 1
Query:    1 YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGITGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTINDGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVTDTDDTNIESATISIT 495
            Y   D   AITS + L D DDTN+E A + IT+N+ + EDVL FVDQNGI+G +++G+G +TL+G+++ A Y+ ALRSITY N+   P+ + RT+SFT+NDGD +SNT TR+I+V  +N AP  +S+E   + Y    G   ITS++ ++D+DDTN+ESA + IT
Sbjct: 3390 YTENDGAVAITSTLALSDSDDTNLESAVVQITANYTNGEDVLTFVDQNGISGVWNAGSGTMTLSGTATVAQYEAALRSITYTNSSDNPSTTTRTVSFTVNDGDVDSNTQTRDISVASINDAPVEASIEGSTLAYTENVGAVAITSTLTLSDSDDTNLESAVVQIT 3554          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124795.5035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1GBH8_9BACT2.440e-5668.26Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A3M8G835_9BACT3.800e-5464.07DUF2341 domain-containing protein n=1 Tax=Balneola... [more]
A0A3D2IL23_9BACT2.420e-5358.79Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A350PD42_9BACT2.240e-4858.79Cadherin domain-containing protein (Fragment) n=1 ... [more]
A0A1B6Y9Y6_9BACT2.320e-4858.79Uncharacterized protein n=12 Tax=Bacteroidetes/Chl... [more]
A0A2D5ZFH9_9BACT2.630e-4051.52CADG domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3M8G6T4_9BACT8.210e-3956.10DUF2341 domain-containing protein n=1 Tax=Balneola... [more]
A0A1B6YA02_9BACT2.080e-3855.76Big-1 domain-containing protein n=1 Tax=Balneola s... [more]
UPI001A9ACB141.360e-3753.29GEVED domain-containing protein n=2 Tax=Desulfonem... [more]
A0A518LE15_9BACT2.510e-3749.09Cadherin domain protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124795contigM-pyrifera_M_contig124795:15..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.5
Seed ortholog evalue5.5e-33
Seed eggNOG ortholog84588.SYNW0985
Preferred namelapA
KEGG koko:K12549,ko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3209 Rhs family protein
EggNOG OGs1GJ0A@1117,1H18T@1129,COG2931@1,COG2931@2,COG3209@1,COG3209@2,COG3898@1,COG3898@2,COG5625@1,COG5625@2
COG Functional cat.Q
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.849465-CDS-M-pyrifera_M_contig124795:14..5151622815764.849465-CDS-M-pyrifera_M_contig124795:14..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124795 15..515 -
1692277558.7801924-CDS-M-pyrifera_M_contig124795:14..5151692277558.7801924-CDS-M-pyrifera_M_contig124795:14..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124795 15..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124795.5035.1prot_M-pyrifera_M_contig124795.5035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124795 15..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124795.5035.1

>prot_M-pyrifera_M_contig124795.5035.1 ID=prot_M-pyrifera_M_contig124795.5035.1|Name=mRNA_M-pyrifera_M_contig124795.5035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
YNSGDSPTAITSAITLFDGDDTNIEGATISITSNFNSSEDVLNFVDQNGI
TGSYSSGTGILTLTGSSSKANYQTALRSITYENTDPVPTESIRTISFTIN
DGDDNSNTLTRNINVVKVNIAPSLSSLEPGAIIYFAGNGQKTITSSVVVT
DTDDTNIESATISITSG
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mRNA from alignment at M-pyrifera_M_contig124795:15..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124795.5035.1 ID=mRNA_M-pyrifera_M_contig124795.5035.1|Name=mRNA_M-pyrifera_M_contig124795.5035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig124795:15..515- (Macrocystis pyrifera P11B4 male)
TATAATTCTGGTGATTCTCCTACAGCGATTACTTCGGCTATTACTTTATT TGATGGAGATGATACCAATATAGAAGGTGCAACTATATCAATAACCTCTA ATTTTAATTCTTCTGAAGATGTTCTGAATTTCGTAGATCAAAATGGAATT ACAGGCTCTTACTCATCTGGTACAGGAATACTCACACTAACAGGGTCATC GAGCAAAGCAAACTACCAAACGGCTTTGCGGAGCATCACTTATGAGAATA CCGACCCTGTTCCAACTGAATCCATCCGAACAATCAGTTTTACTATTAAC GATGGTGATGATAACAGTAATACTTTAACTAGAAATATTAACGTTGTAAA AGTAAATATAGCTCCATCTTTGAGCAGTCTAGAACCTGGGGCAATCATTT ATTTTGCAGGAAATGGTCAAAAAACGATCACTTCTTCTGTAGTAGTTACT GATACTGATGATACCAACATTGAAAGCGCTACAATTTCAATAACTTCAGG G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124795:15..515-

>mRNA_M-pyrifera_M_contig124795.5035.1 ID=mRNA_M-pyrifera_M_contig124795.5035.1|Name=mRNA_M-pyrifera_M_contig124795.5035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig124795:15..515- (Macrocystis pyrifera P11B4 male)
TATAATTCTGGTGATTCTCCTACAGCGATTACTTCGGCTATTACTTTATT
TGATGGAGATGATACCAATATAGAAGGTGCAACTATATCAATAACCTCTA
ATTTTAATTCTTCTGAAGATGTTCTGAATTTCGTAGATCAAAATGGAATT
ACAGGCTCTTACTCATCTGGTACAGGAATACTCACACTAACAGGGTCATC
GAGCAAAGCAAACTACCAAACGGCTTTGCGGAGCATCACTTATGAGAATA
CCGACCCTGTTCCAACTGAATCCATCCGAACAATCAGTTTTACTATTAAC
GATGGTGATGATAACAGTAATACTTTAACTAGAAATATTAACGTTGTAAA
AGTAAATATAGCTCCATCTTTGAGCAGTCTAGAACCTGGGGCAATCATTT
ATTTTGCAGGAAATGGTCAAAAAACGATCACTTCTTCTGTAGTAGTTACT
GATACTGATGATACCAACATTGAAAGCGCTACAATTTCAATAACTTCAGG
GTATAATTCTGGTGATTCTCCTACAGCGATTACTTCGGCTATTACTTTAT
TTGATGGAGATGATACCAATATAGAAGGTGCAACTATATCAATAACCTCT
AATTTTAATTCTTCTGAAGATGTTCTGAATTTCGTAGATCAAAATGGAAT
TACAGGCTCTTACTCATCTGGTACAGGAATACTCACACTAACAGGGTCAT
CGAGCAAAGCAAACTACCAAACGGCTTTGCGGAGCATCACTTATGAGAAT
ACCGACCCTGTTCCAACTGAATCCATCCGAACAATCAGTTTTACTATTAA
CGATGGTGATGATAACAGTAATACTTTAACTAGAAATATTAACGTTGTAA
AAGTAAATATAGCTCCATCTTTGAGCAGTCTAGAACCTGGGGCAATCATT
TATTTTGCAGGAAATGGTCAAAAAACGATCACTTCTTCTGTAGTAGTTAC
TGATACTGATGATACCAACATTGAAAGCGCTACAATTTCAATAACTTCAG
GG
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