mRNA_M-pyrifera_M_contig12479.5034.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12479.5034.1
Unique NamemRNA_M-pyrifera_M_contig12479.5034.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12479.5034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12479contigM-pyrifera_M_contig12479:6197..6795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.7954676-UTR-M-pyrifera_M_contig12479:6196..64381622815764.7954676-UTR-M-pyrifera_M_contig12479:6196..6438Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12479 6197..6438 +
1692277558.7601268-UTR-M-pyrifera_M_contig12479:6196..64381692277558.7601268-UTR-M-pyrifera_M_contig12479:6196..6438Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12479 6197..6438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.8084686-CDS-M-pyrifera_M_contig12479:6438..67951622815764.8084686-CDS-M-pyrifera_M_contig12479:6438..6795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12479 6439..6795 +
1692277558.7707405-CDS-M-pyrifera_M_contig12479:6438..67951692277558.7707405-CDS-M-pyrifera_M_contig12479:6438..6795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12479 6439..6795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12479.5034.1prot_M-pyrifera_M_contig12479.5034.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12479 6439..6795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12479.5034.1

>prot_M-pyrifera_M_contig12479.5034.1 ID=prot_M-pyrifera_M_contig12479.5034.1|Name=mRNA_M-pyrifera_M_contig12479.5034.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MPQSKLQTLKISTLCPSFSLGWFPVRGNASRFMSPTLSPQYHPLPSLCTT
ARGSSVRTDFAWVIQVLPGFRRTTTPKHHRFRGRCARHRKRTTRACRPNL
RACGSCSPCAKYKMPAKKL
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mRNA from alignment at M-pyrifera_M_contig12479:6197..6795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12479.5034.1 ID=mRNA_M-pyrifera_M_contig12479.5034.1|Name=mRNA_M-pyrifera_M_contig12479.5034.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=599bp|location=Sequence derived from alignment at M-pyrifera_M_contig12479:6197..6795+ (Macrocystis pyrifera P11B4 male)
GTTAAAAATGTTTTACGAGTCCACGTTTATGCCGCTAAAACCTTGCGCCA
GCATTTCCTTCGGAGAACGAACCGACTGTCCACACCATCCCGAAACTAAA
GAAAAGAAAAAATAACCAAAACCCTACATGTCCACGTACGTACGTAGACT
ATTACTCGAGAAGCAACCAACACGAGAAACAAAAACACGACTCTTCACAC
ACTACTGCCTGGAACCAGCACCGCCGGTACGTTGCATGTTGCATGCCGCA
ATCAAAGCTACAAACGCTAAAAATATCTACCCTCTGCCCTTCGTTCAGTC
TGGGCTGGTTCCCTGTTCGGGGCAACGCGAGTCGCTTCATGTCCCCAACA
CTCTCCCCTCAGTACCACCCCCTTCCTTCCCTCTGTACAACCGCGCGGGG
GTCTTCCGTCCGAACTGATTTCGCATGGGTGATCCAGGTACTGCCTGGCT
TTCGACGAACAACTACGCCGAAGCACCACCGGTTTCGTGGTCGTTGCGCT
CGTCATCGCAAACGCACGACACGCGCATGCCGCCCTAATCTACGAGCCTG
CGGAAGTTGCTCACCATGTGCTAAATATAAAATGCCTGCCAAAAAATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12479:6197..6795+

>mRNA_M-pyrifera_M_contig12479.5034.1 ID=mRNA_M-pyrifera_M_contig12479.5034.1|Name=mRNA_M-pyrifera_M_contig12479.5034.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig12479:6197..6795+ (Macrocystis pyrifera P11B4 male)
ATGCCGCAATCAAAGCTACAAACGCTAAAAATATCTACCCTCTGCCCTTC
GTTCAGTCTGGGCTGGTTCCCTGTTCGGGGCAACGCGAGTCGCTTCATGT
CCCCAACACTCTCCCCTCAGTACCACCCCCTTCCTTCCCTCTGTACAACC
GCGCGGGGGTCTTCCGTCCGAACTGATTTCGCATGGGTGATCCAGGTACT
GCCTGGCTTTCGACGAACAACTACGCCGAAGCACCACCGGTTTCGTGGTC
GTTGCGCTCGTCATCGCAAACGCACGACACGCGCATGCCGCCCTAATCTA
CGAGCCTGCGGAAGTTGCTCACCATGTGCTAAATATAAAATGCCTGCCAA
AAAATTGATGCCGCAATCAAAGCTACAAACGCTAAAAATATCTACCCTCT
GCCCTTCGTTCAGTCTGGGCTGGTTCCCTGTTCGGGGCAACGCGAGTCGC
TTCATGTCCCCAACACTCTCCCCTCAGTACCACCCCCTTCCTTCCCTCTG
TACAACCGCGCGGGGGTCTTCCGTCCGAACTGATTTCGCATGGGTGATCC
AGGTACTGCCTGGCTTTCGACGAACAACTACGCCGAAGCACCACCGGTTT
CGTGGTCGTTGCGCTCGTCATCGCAAACGCACGACACGCGCATGCCGCCC
TAATCTACGAGCCTGCGGAAGTTGCTCACCATGTGCTAAATATAAAATGC
CTGCCAAAAAATTG
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