mRNA_M-pyrifera_M_contig124760.5031.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124760.5031.1
Unique NamemRNA_M-pyrifera_M_contig124760.5031.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.930e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            DPVWYPVNRLRNVAVKAV+TSHFLMTDIDIWPDVNAY AL
Sbjct:   15 DPVWYPVNRLRNVAVKAVKTSHFLMTDIDIWPDVNAYSAL 54
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-9
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            YP+N LRNVA+KAVRTSHFL++DID+WP V++Y  +
Sbjct:  220 YPINALRNVALKAVRTSHFLLSDIDLWPSVDSYNEI 255
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            D   YPVNRLRN+A+K V+TSHFL+ DID+WPD   Y+ L
Sbjct:  211 DATKYPVNRLRNLALKHVQTSHFLLHDIDLWPDSTLYKRL 250
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A196SK84_BLAHN (Glycosyltransferase-like protein LARGE2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SK84_BLAHN)

HSP 1 Score: 55.8 bits (133), Expect = 5.350e-8
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            DP+ YPVN+LRN+A+  V T+HF ++D+D+WP  + Y+A+
Sbjct:   49 DPLLYPVNKLRNMAIAQVETTHFYLSDMDVWPSPSTYRAI 88
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A196SIJ4_BLAHN (Glycosyltransferase-like protein LARGE2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SIJ4_BLAHN)

HSP 1 Score: 55.8 bits (133), Expect = 5.930e-8
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            DP+ YPVN+LRN+A+  V T+HF ++D+D+WP  + Y+A+
Sbjct:  140 DPLLYPVNKLRNMAIAQVETTHFYLSDMDVWPSPSTYRAI 179
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A7S4A3V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVRTSHFLMTDIDIWPDVN 105
            YPVN+LRN+A+  VRTSHFL  DID+WPD N
Sbjct:  210 YPVNKLRNMAISRVRTSHFLHADIDLWPDAN 240
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A196SFK5_BLAHN (Glycosyltransferase-like protein LARGE2-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFK5_BLAHN)

HSP 1 Score: 53.9 bits (128), Expect = 2.760e-7
Identity = 19/36 (52.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            YP+NRLRN+A+++V TSHF++ D+D+WP +  Y++L
Sbjct:   89 YPLNRLRNIAIESVSTSHFVLFDMDVWPSLTTYKSL 124
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: A0A196S7R2_BLAHN (Glycosyltransferase-like protein LARGE1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S7R2_BLAHN)

HSP 1 Score: 53.9 bits (128), Expect = 2.830e-7
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            +PVN LRN+A+K V T+HFL+TD+D+WP  +AYQ L
Sbjct:  150 FPVNLLRNIAIKNVHTTHFLVTDMDLWPIPSAYQRL 185
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: D8M7K9_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7K9_BLAHO)

HSP 1 Score: 53.5 bits (127), Expect = 3.590e-7
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            DP ++P+N LRN A+  V+T+HF +TD+D+WP   +Y A+
Sbjct:  216 DPFYFPINTLRNRAIDNVKTTHFWLTDMDVWPSFGSYDAI 255
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BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Match: D8LWS0_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LWS0_BLAHO)

HSP 1 Score: 53.1 bits (126), Expect = 5.180e-7
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL 120
            +P  YP+N+LRN+A++ V+T HF +TD+D+WP    Y+A+
Sbjct:   77 NPGIYPINKLRNLAIRNVKTDHFWLTDLDMWPSQGLYEAI 116
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124760.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP29_ECTSI4.930e-1995.00Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
A0A7S0J5T3_9EUKA1.900e-966.67Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3K145_9STRA1.240e-862.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A196SK84_BLAHN5.350e-850.00Glycosyltransferase-like protein LARGE2 n=1 Tax=Bl... [more]
A0A196SIJ4_BLAHN5.930e-850.00Glycosyltransferase-like protein LARGE2 n=1 Tax=Bl... [more]
A0A7S4A3V8_9STRA1.520e-770.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A196SFK5_BLAHN2.760e-752.78Glycosyltransferase-like protein LARGE2-like prote... [more]
A0A196S7R2_BLAHN2.830e-761.11Glycosyltransferase-like protein LARGE1 n=1 Tax=Bl... [more]
D8M7K9_BLAHO3.590e-747.50Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
D8LWS0_BLAHO5.180e-747.50Uncharacterized protein n=1 Tax=Blastocystis homin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124760contigM-pyrifera_M_contig124760:223..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D8LP29
KEGG koko:K09668
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT49
Ec32 orthologEc-06_006800.1
COG Functional cat.A
CAZyGT49,GT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.645357-CDS-M-pyrifera_M_contig124760:222..3421622815764.645357-CDS-M-pyrifera_M_contig124760:222..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124760 223..342 +
1692277558.6818614-CDS-M-pyrifera_M_contig124760:222..3421692277558.6818614-CDS-M-pyrifera_M_contig124760:222..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124760 223..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124760.5031.1prot_M-pyrifera_M_contig124760.5031.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124760 223..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124760.5031.1

>prot_M-pyrifera_M_contig124760.5031.1 ID=prot_M-pyrifera_M_contig124760.5031.1|Name=mRNA_M-pyrifera_M_contig124760.5031.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
DPVWYPVNRLRNVAVKAVRTSHFLMTDIDIWPDVNAYQAL
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mRNA from alignment at M-pyrifera_M_contig124760:223..342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124760.5031.1 ID=mRNA_M-pyrifera_M_contig124760.5031.1|Name=mRNA_M-pyrifera_M_contig124760.5031.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig124760:223..342+ (Macrocystis pyrifera P11B4 male)
GACCCTGTATGGTACCCGGTAAATAGGCTCAGAAACGTGGCGGTGAAGGC
GGTTAGAACCTCCCACTTCCTCATGACGGACATAGATATCTGGCCCGACG
TCAACGCCTACCAGGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124760:223..342+

>mRNA_M-pyrifera_M_contig124760.5031.1 ID=mRNA_M-pyrifera_M_contig124760.5031.1|Name=mRNA_M-pyrifera_M_contig124760.5031.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig124760:223..342+ (Macrocystis pyrifera P11B4 male)
GACCCTGTATGGTACCCGGTAAATAGGCTCAGAAACGTGGCGGTGAAGGC
GGTTAGAACCTCCCACTTCCTCATGACGGACATAGATATCTGGCCCGACG
TCAACGCCTACCAGGCGCTGGACCCTGTATGGTACCCGGTAAATAGGCTC
AGAAACGTGGCGGTGAAGGCGGTTAGAACCTCCCACTTCCTCATGACGGA
CATAGATATCTGGCCCGACGTCAACGCCTACCAGGCGCTG
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