mRNA_M-pyrifera_M_contig124677.5022.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A3D5DBN7_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DBN7_9GAMM) HSP 1 Score: 285 bits (730), Expect = 1.580e-89 Identity = 140/172 (81.40%), Postives = 154/172 (89.53%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
KL Y+++LL+ELDQGTT+W PNFDGT+DEP LLP+RLPNLLLNGTTGIAVGMATDIPPHNL EVA ACVHL+E PKATVADLCA I+GPD+PT AEIITP EIR+AYETGHGS+KMRA YEIEK +AI ALPYQTSG+KIIEQIA QMQAKKL LDDIRDESDHETPT
Sbjct: 126 KLTAYSEILLSELDQGTTEWAPNFDGTIDEPLLLPSRLPNLLLNGTTGIAVGMATDIPPHNLGEVATACVHLLEKPKATVADLCAFIHGPDYPTSAEIITPQAEIRKAYETGHGSIKMRAGYEIEKGVVAINALPYQTSGSKIIEQIAHQMQAKKLPMLDDIRDESDHETPT 297
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A523NV03_9PROT (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NV03_9PROT) HSP 1 Score: 285 bits (728), Expect = 2.930e-89 Identity = 139/172 (80.81%), Postives = 154/172 (89.53%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
KL Y++LLL EL QGT DW PNFDGTL+EP LLPARLPN+LLNGTTGIAVGMATDIPPHNLREVAAAC+HL++NPKATVA LC H+ GPDFP+ AEI+TP EIRQAYETGHGSVK+RAR+EIEK +I IT LPYQTSG+KIIEQIAQQM+AKKL LDDIRDESDHETPT
Sbjct: 126 KLTAYSELLLGELAQGTADWAPNFDGTLEEPVLLPARLPNVLLNGTTGIAVGMATDIPPHNLREVAAACIHLLQNPKATVAQLCEHVLGPDFPSGAEIVTPPHEIRQAYETGHGSVKLRARFEIEKGSIVITTLPYQTSGSKIIEQIAQQMRAKKLPMLDDIRDESDHETPT 297
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A7C5XQJ0_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XQJ0_9GAMM) HSP 1 Score: 270 bits (690), Expect = 1.770e-83 Identity = 131/172 (76.16%), Postives = 151/172 (87.79%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+LAPYA++LLAELDQGT DW PNFDGTL EP +LPARLPN+LLNG TGIAVGMATDIPPHNLREVAAACVHL+E+PKATVA+LC HI GPDFPTEAEIITP +EI + YETG GS++MRARYE E A+ +TALPYQ SG +++EQIA QMQAKKL + D+RDESDHE+PT
Sbjct: 142 RLAPYAEVLLAELDQGTVDWVPNFDGTLREPAVLPARLPNVLLNGATGIAVGMATDIPPHNLREVAAACVHLLEHPKATVAELCGHILGPDFPTEAEIITPREEIVRIYETGTGSIRMRARYEREDGAVVVTALPYQVSGARVLEQIAAQMQAKKLPLVADLRDESDHESPT 313
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A7C1YFY4_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C1YFY4_9GAMM) HSP 1 Score: 267 bits (683), Expect = 1.450e-82 Identity = 130/172 (75.58%), Postives = 151/172 (87.79%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+LAPYA+LLL+EL QGT DW PNFDGTL+EP LLPARLPNLLLNGTTGIAVGMATDIPPHN+REVAAA V L+E PKATVA+LC H+ GPDFPTEAEIITP +E+ +AYETG+GSV+MRAR+E+E+ I ITALPYQ G K++EQIAQQM AKKL ++D+RDESDHE PT
Sbjct: 130 RLAPYAELLLSELGQGTVDWVPNFDGTLEEPPLLPARLPNLLLNGTTGIAVGMATDIPPHNMREVAAAAVRLLEQPKATVAELCEHLLGPDFPTEAEIITPREELIKAYETGNGSVRMRARWEMEQGDIVITALPYQVPGGKVLEQIAQQMNAKKLPMVEDLRDESDHENPT 301
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A7C1GY99_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A7C1GY99_9GAMM) HSP 1 Score: 267 bits (682), Expect = 2.120e-82 Identity = 126/172 (73.26%), Postives = 153/172 (88.95%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+LAPYA++LL EL QGT DW PNFDGTLDEP +LPARLPN+LLNG+TGIAVGM+TDIPPHNLREVAAAC+HL+++PKATVA+LC HI GPDFPT+AE+ITP +I++ YETG+GS++MRARYE E+ I +TALPYQ SG K++EQIAQQMQAKKL ++D+RDESDHE PT
Sbjct: 131 RLAPYAEVLLRELGQGTVDWVPNFDGTLDEPAVLPARLPNVLLNGSTGIAVGMSTDIPPHNLREVAAACIHLLDSPKATVAELCEHIQGPDFPTDAELITPRADIQRMYETGNGSLRMRARYEREEGDIVVTALPYQVSGAKVLEQIAQQMQAKKLPMVEDLRDESDHEHPT 302
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: B8GTV5_THISH (DNA topoisomerase 4 subunit A n=4 Tax=Thioalkalivibrio TaxID=106633 RepID=B8GTV5_THISH) HSP 1 Score: 263 bits (671), Expect = 8.600e-81 Identity = 126/172 (73.26%), Postives = 150/172 (87.21%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+L+PYA LLL+EL QGT DW PNFDGTL+EP++LPARLPN+LLNG TGIAVGMATDIPPHNLREVA+ACVHL++NP+A+VADLC HI GPDFPTEAEIITP E+R+ YE+G+G ++MRARYE E I ITALPYQ SG+K++EQIA QM AKKL ++D+RDESDHE PT
Sbjct: 130 RLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMATDIPPHNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGGLRMRARYEREGTDIIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEHPT 301
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A3M1UML5_9GAMM (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1UML5_9GAMM) HSP 1 Score: 262 bits (669), Expect = 1.480e-80 Identity = 126/172 (73.26%), Postives = 148/172 (86.05%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+L+ Y +LLLAEL QGT DW PNFDGTL+EP +LPARLPN+LLNGTTGIAVGMATDIPPHNLREVAAACV L+E+PKA VA LC HI GPDFPT AEI+TP E+R+ YETG GS++ RARYEIE+ I ITALPYQ SG++++EQIAQQMQA+KL ++D+RDESDHE PT
Sbjct: 121 RLSRYTELLLAELGQGTVDWVPNFDGTLEEPAVLPARLPNVLLNGTTGIAVGMATDIPPHNLREVAAACVRLLEDPKADVAALCEHIQGPDFPTAAEIVTPRAELRRIYETGQGSIRARARYEIEQGDIVITALPYQVSGSRVLEQIAQQMQARKLPMIEDLRDESDHENPT 292
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A2D7WD14_9GAMM (DNA topoisomerase 4 subunit A n=2 Tax=Spongiibacter TaxID=630749 RepID=A0A2D7WD14_9GAMM) HSP 1 Score: 261 bits (668), Expect = 2.550e-80 Identity = 123/172 (71.51%), Postives = 150/172 (87.21%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
KL YA+++L+EL QGT DW PNFDG LDEP +LPAR+PN+LLNGTTGIAVGMATDIPPHNLREV +AC+HL++ PKATVA+LC H+ GPDFPT+AE+ITP+DEIR+ YETG GS++MRA ++ E D I ITALP+QTSG+K++EQIAQQMQAKKL + D+RDESDHE PT
Sbjct: 131 KLTRYAEVMLSELGQGTVDWVPNFDGALDEPAMLPARVPNILLNGTTGIAVGMATDIPPHNLREVVSACIHLLDAPKATVAELCEHVKGPDFPTDAELITPADEIRKIYETGRGSLRMRAVWQEEHDDIVITALPHQTSGSKVLEQIAQQMQAKKLPMVVDLRDESDHENPT 302
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A6N1DN43_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DN43_9GAMM) HSP 1 Score: 261 bits (666), Expect = 4.490e-80 Identity = 125/172 (72.67%), Postives = 149/172 (86.63%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
+LA + DLLL+EL QGT DW PNFDGTL+EP +LPAR+P++LLNGTTGIAVGMATDIPPHNLREV AACVHL+ENPKATVA+LCAHI GPD+PTEAE+ITP ++ + YETG GS++MRARYE E I ITALP+QTSG +++EQIAQQM AKKL ++D+RDESDHE PT
Sbjct: 130 RLASFTDLLLSELGQGTVDWIPNFDGTLEEPAMLPARVPHVLLNGTTGIAVGMATDIPPHNLREVVAACVHLLENPKATVAELCAHIQGPDYPTEAEVITPRADLIRMYETGTGSIRMRARYEREDGDIIITALPHQTSGARVLEQIAQQMNAKKLPLVEDLRDESDHENPT 301
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Match: A0A316FU70_9GAMM (DNA topoisomerase 4 subunit A n=1 Tax=Pleionea mediterranea TaxID=523701 RepID=A0A316FU70_9GAMM) HSP 1 Score: 261 bits (666), Expect = 4.570e-80 Identity = 125/172 (72.67%), Postives = 149/172 (86.63%), Query Frame = 1
Query: 1 KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAVGMATDIPPHNLREVAAACVHLIENPKATVADLCAHINGPDFPTEAEIITPSDEIRQAYETGHGSVKMRARYEIEKDAIAITALPYQTSGNKIIEQIAQQMQAKKLATLDDIRDESDHETPT 516
KL+ Y+++LL+EL GT DW PNFDGT++EP++LPARLPNLLLNGTTGIAVGMATDIPPHNLREVA ACVHL++NPKA+VADL +I GPD+PT+AE+ITP D++ + YETG GSVKMRARY E I ITALP+Q SGNKI+EQ+AQQMQAKKL + D+RDESDHETPT
Sbjct: 127 KLSKYSEVLLSELGHGTVDWIPNFDGTMNEPKILPARLPNLLLNGTTGIAVGMATDIPPHNLREVADACVHLLDNPKASVADLHQYIKGPDYPTDAEVITPKDDLLKIYETGRGSVKMRARYHTEDGEIVITALPHQVSGNKIMEQVAQQMQAKKLPMVSDLRDESDHETPT 298 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124677.5022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124677.5022.1 >prot_M-pyrifera_M_contig124677.5022.1 ID=prot_M-pyrifera_M_contig124677.5022.1|Name=mRNA_M-pyrifera_M_contig124677.5022.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp KLAPYADLLLAELDQGTTDWKPNFDGTLDEPELLPARLPNLLLNGTTGIAback to top mRNA from alignment at M-pyrifera_M_contig124677:1..516- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124677.5022.1 ID=mRNA_M-pyrifera_M_contig124677.5022.1|Name=mRNA_M-pyrifera_M_contig124677.5022.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig124677:1..516- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124677:1..516- >mRNA_M-pyrifera_M_contig124677.5022.1 ID=mRNA_M-pyrifera_M_contig124677.5022.1|Name=mRNA_M-pyrifera_M_contig124677.5022.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig124677:1..516- (Macrocystis pyrifera P11B4 male)back to top |