mRNA_M-pyrifera_M_contig124671.5021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124671.5021.1
Unique NamemRNA_M-pyrifera_M_contig124671.5021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A1E4TC85_9ASCO (USP domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TC85_9ASCO)

HSP 1 Score: 58.5 bits (140), Expect = 2.330e-8
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFYER 198
            Y L G++ HSG+  + GHY CY K P+          W ++DD EV   S + V  AQA++LFY +
Sbjct:  346 YELIGLISHSGKSANSGHYVCYCKQPSGT--------WAKYDDDEVQQVSFNAVLKAQAYMLFYAK 403          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: X0AWB8_FUSOX (Ubiquitin carboxyl-terminal hydrolase 22/27/51 n=9 Tax=Fusarium oxysporum species complex TaxID=171631 RepID=X0AWB8_FUSOX)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  +D GHYT Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  335 YDLLSVVVHVGE-IDTGHYTSYCRV--------GDQ-WFKFNDHKVELASLSDVLGAQAYLLFY 388          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A8H4KQH5_9HYPO (Ubiquitin carboxyl-terminal hydrolase 22/27/51 n=1 Tax=Fusarium austroafricanum TaxID=2364996 RepID=A0A8H4KQH5_9HYPO)

HSP 1 Score: 56.6 bits (135), Expect = 1.110e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  +D GHYT Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  449 YDLLSVVVHVGE-IDTGHYTSYCRV--------GDQ-WFKFNDHKVELASLSDVLGAQAYLLFY 502          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A428QK84_9HYPO (Ubiquitinyl hydrolase 1 n=15 Tax=Fusarium TaxID=5506 RepID=A0A428QK84_9HYPO)

HSP 1 Score: 56.6 bits (135), Expect = 1.110e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  +D GHYT Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  454 YDLLSVVVHVGE-IDTGHYTSYCRV--------GDQ-WFKFNDHKVEMASLSDVLGAQAYLLFY 507          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A395RKS6_FUSSP (Ubiquitinyl hydrolase 1 n=3 Tax=Fusarium TaxID=5506 RepID=A0A395RKS6_FUSSP)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  +D GHYT Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  428 YDLLSVVVHVGE-LDTGHYTSYCRV--------GDQ-WFKFNDHKVELASLSDVLGAQAYLLFY 481          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A2L2TIG8_9HYPO (Ubiquitinyl hydrolase 1 n=59 Tax=Fusarium TaxID=5506 RepID=A0A2L2TIG8_9HYPO)

HSP 1 Score: 55.8 bits (133), Expect = 2.080e-7
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEV--WTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  +D GHYT Y +         G+++  W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  556 YDLLSVVVHVGE-LDTGHYTSYCRV--------GDQMKKWFKFNDHKVELASLSDVLGAQAYLLFY 612          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A7I8VNM8_9ANNE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VNM8_9ANNE)

HSP 1 Score: 55.1 bits (131), Expect = 3.930e-7
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFYERKE 204
            Y+L GV+VH G     GHYT YA   AP+ +      W  +DD+ VT   I  V  A+A++LFY++KE
Sbjct:  552 YDLTGVIVHQGTAGG-GHYTAYA-CNAPSQS------WYEYDDQSVTEVDIQTVESAEAYVLFYKKKE 611          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A179IV88_CORDF (USP domain-containing protein n=5 Tax=Cordycipitaceae TaxID=474943 RepID=A0A179IV88_CORDF)

HSP 1 Score: 54.3 bits (129), Expect = 7.180e-7
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  ++ GHYT Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  384 YDLLSVVVHVGE-LETGHYTSYCRV--------GDQ-WFKFNDHKVELASLSDVLGAQAYLLFY 437          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A811QAL3_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QAL3_9POAL)

HSP 1 Score: 54.3 bits (129), Expect = 7.410e-7
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTP---GEEVWTRFDDREVTTASIDDVRGAQAFLLFYER 198
            Y+L  V+VH G+ +D GHY  + +A       P       W    D  V  AS+++V G+QA++LFYER
Sbjct: 1151 YHLVAVIVHEGQTLDGGHYITFLRASRIGYQQPVSGAASTWFYVSDEHVRDASLEEVLGSQAYILFYER 1219          
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Match: A0A369H3S8_9HYPO (USP domain-containing protein n=1 Tax=Ophiocordyceps camponoti-saundersi (nom. inval.) TaxID=2039874 RepID=A0A369H3S8_9HYPO)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-6
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTASIDDVRGAQAFLLFY 192
            Y+L  VVVH G  ++ GHY  Y +         G++ W +F+D +V  AS+ DV GAQA+LLFY
Sbjct:  229 YDLLSVVVHVGE-IETGHYVSYCRV--------GDQ-WFKFNDHKVEMASVSDVLGAQAYLLFY 282          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124671.5021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E4TC85_9ASCO2.330e-839.39USP domain-containing protein n=1 Tax=Tortispora c... [more]
X0AWB8_FUSOX1.090e-746.88Ubiquitin carboxyl-terminal hydrolase 22/27/51 n=9... [more]
A0A8H4KQH5_9HYPO1.110e-746.88Ubiquitin carboxyl-terminal hydrolase 22/27/51 n=1... [more]
A0A428QK84_9HYPO1.110e-746.88Ubiquitinyl hydrolase 1 n=15 Tax=Fusarium TaxID=55... [more]
A0A395RKS6_FUSSP2.060e-746.88Ubiquitinyl hydrolase 1 n=3 Tax=Fusarium TaxID=550... [more]
A0A2L2TIG8_9HYPO2.080e-745.45Ubiquitinyl hydrolase 1 n=59 Tax=Fusarium TaxID=55... [more]
A0A7I8VNM8_9ANNE3.930e-742.65Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dimo... [more]
A0A179IV88_CORDF7.180e-745.31USP domain-containing protein n=5 Tax=Cordycipitac... [more]
A0A811QAL3_9POAL7.410e-737.68Hypothetical protein n=2 Tax=Miscanthus lutariorip... [more]
A0A369H3S8_9HYPO1.200e-643.75USP domain-containing protein n=1 Tax=Ophiocordyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124671contigM-pyrifera_M_contig124671:150..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score66.6
Seed ortholog evalue5.1e-09
Seed eggNOG ortholog5833.PFI0225w
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs3KF25@422676,3YHZI@5794,3YWXN@5819,KOG1865@1,KOG1865@2759
COG Functional cat.O
Best tax levelHaemosporida
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.2575967-CDS-M-pyrifera_M_contig124671:149..3561622815764.2575967-CDS-M-pyrifera_M_contig124671:149..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124671 150..356 -
1692277558.5517044-CDS-M-pyrifera_M_contig124671:149..3561692277558.5517044-CDS-M-pyrifera_M_contig124671:149..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124671 150..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124671.5021.1prot_M-pyrifera_M_contig124671.5021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124671 150..356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124671.5021.1

>prot_M-pyrifera_M_contig124671.5021.1 ID=prot_M-pyrifera_M_contig124671.5021.1|Name=mRNA_M-pyrifera_M_contig124671.5021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
YNLRGVVVHSGRGVDCGHYTCYAKAPAPAATTPGEEVWTRFDDREVTTAS
IDDVRGAQAFLLFYERKE*
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mRNA from alignment at M-pyrifera_M_contig124671:150..356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124671.5021.1 ID=mRNA_M-pyrifera_M_contig124671.5021.1|Name=mRNA_M-pyrifera_M_contig124671.5021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig124671:150..356- (Macrocystis pyrifera P11B4 male)
TACAACCTTCGTGGTGTCGTTGTGCATTCAGGGAGAGGTGTGGATTGTGG ACACTACACGTGCTATGCAAAAGCACCAGCACCTGCAGCCACAACGCCTG GAGAAGAAGTATGGACTCGGTTTGATGACCGTGAAGTCACCACTGCATCA ATAGATGATGTGAGAGGAGCGCAAGCCTTCTTGCTCTTTTATGAAAGGAA GGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124671:150..356-

>mRNA_M-pyrifera_M_contig124671.5021.1 ID=mRNA_M-pyrifera_M_contig124671.5021.1|Name=mRNA_M-pyrifera_M_contig124671.5021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig124671:150..356- (Macrocystis pyrifera P11B4 male)
TACAACCTTCGTGGTGTCGTTGTGCATTCAGGGAGAGGTGTGGATTGTGG
ACACTACACGTGCTATGCAAAAGCACCAGCACCTGCAGCCACAACGCCTG
GAGAAGAAGTATGGACTCGGTTTGATGACCGTGAAGTCACCACTGCATCA
ATAGATGATGTGAGAGGAGCGCAAGCCTTCTTGCTCTTTTATGAAAGGAA
GGAATGATACAACCTTCGTGGTGTCGTTGTGCATTCAGGGAGAGGTGTGG
ATTGTGGACACTACACGTGCTATGCAAAAGCACCAGCACCTGCAGCCACA
ACGCCTGGAGAAGAAGTATGGACTCGGTTTGATGACCGTGAAGTCACCAC
TGCATCAATAGATGATGTGAGAGGAGCGCAAGCCTTCTTGCTCTTTTATG
AAAGGAAGGAATGA
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